data_7S5P # _model_server_result.job_id Ve7PsmiPxFKK07F2s0-7Yg _model_server_result.datetime_utc '2025-06-20 11:18:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7S5P # _exptl.entry_id 7S5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S5P _cell.length_a 145.898 _cell.length_b 145.898 _cell.length_c 111.994 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 336 1_555 A SG CYS 43 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 61 A CYS 379 1_555 A SG CYS 114 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 73 A CYS 391 1_555 A SG CYS 207 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 162 A CYS 480 1_555 A SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 145 H CYS 140 1_555 B SG CYS 201 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 C SG CYS 21 L CYS 23 1_555 C SG CYS 86 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 C SG CYS 135 L CYS 134 1_555 C SG CYS 194 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 25 A ASN 343 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7S5P _atom_sites.fract_transf_matrix[1][1] 0.006854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 528 NAG NAG . E 5 SO4 A 1 602 1 SO4 SO4 . F 5 SO4 A 1 603 2 SO4 SO4 . G 5 SO4 A 1 604 7 SO4 SO4 . H 5 SO4 A 1 605 13 SO4 SO4 . I 5 SO4 H 1 301 3 SO4 SO4 . J 5 SO4 H 1 302 4 SO4 SO4 . K 5 SO4 H 1 303 12 SO4 SO4 . L 6 EDO H 1 304 2 EDO EDO . M 5 SO4 L 1 301 5 SO4 SO4 . N 5 SO4 L 1 302 6 SO4 SO4 . O 5 SO4 L 1 303 8 SO4 SO4 . P 5 SO4 L 1 304 9 SO4 SO4 . Q 5 SO4 L 1 305 10 SO4 SO4 . R 5 SO4 L 1 306 14 SO4 SO4 . S 6 EDO L 1 307 1 EDO EDO . T 7 HOH A 1 701 17 HOH HOH . T 7 HOH A 2 702 22 HOH HOH . T 7 HOH A 3 703 24 HOH HOH . T 7 HOH A 4 704 23 HOH HOH . T 7 HOH A 5 705 18 HOH HOH . T 7 HOH A 6 706 6 HOH HOH . T 7 HOH A 7 707 16 HOH HOH . T 7 HOH A 8 708 9 HOH HOH . T 7 HOH A 9 709 12 HOH HOH . T 7 HOH A 10 710 5 HOH HOH . T 7 HOH A 11 711 2 HOH HOH . T 7 HOH A 12 712 26 HOH HOH . U 7 HOH H 1 401 7 HOH HOH . U 7 HOH H 2 402 15 HOH HOH . U 7 HOH H 3 403 27 HOH HOH . U 7 HOH H 4 404 28 HOH HOH . U 7 HOH H 5 405 4 HOH HOH . U 7 HOH H 6 406 1 HOH HOH . U 7 HOH H 7 407 25 HOH HOH . U 7 HOH H 8 408 11 HOH HOH . V 7 HOH L 1 401 20 HOH HOH . V 7 HOH L 2 402 14 HOH HOH . V 7 HOH L 3 403 10 HOH HOH . V 7 HOH L 4 404 19 HOH HOH . V 7 HOH L 5 405 13 HOH HOH . V 7 HOH L 6 406 29 HOH HOH . V 7 HOH L 7 407 3 HOH HOH . V 7 HOH L 8 408 21 HOH HOH . V 7 HOH L 9 409 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -25.548 68.096 -0.722 1 61.52 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . D 4 -25.773 69.603 -0.537 1 63.71 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . D 4 -26.2 69.909 0.898 1 67.23 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . D 4 -27.398 69.058 1.296 1 76.98 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . D 4 -27.086 67.583 1.069 1 75.03 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . D 4 -28.263 66.679 1.357 1 83.5 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . D 4 -24.606 71.608 -1.346 1 54.72 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . D 4 -23.273 72.233 -1.634 1 47.6 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . D 4 -24.576 70.355 -0.879 1 57.35 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . D 4 -26.531 71.289 1.009 1 64.15 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . D 4 -27.712 69.27 2.668 1 78.26 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . D 4 -26.724 67.373 -0.304 1 64.23 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . D 4 -28.785 66.904 2.661 1 90.76 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . D 4 -25.66 72.209 -1.529 1 45.48 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #