data_7S5Q # _model_server_result.job_id Yei3QnEqZcQvZPHMGbH-GA _model_server_result.datetime_utc '2025-06-21 10:21:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 7S5Q # _exptl.entry_id 7S5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S5Q _cell.length_a 89.637 _cell.length_b 120.97 _cell.length_c 137.987 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 336 1_555 A SG CYS 43 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 61 A CYS 379 1_555 A SG CYS 114 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 73 A CYS 391 1_555 A SG CYS 207 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 162 A CYS 480 1_555 A SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 B SG CYS 101 B CYS 97 1_555 B SG CYS 106 B CYS 100 1_555 ? ? ? B ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 150 B CYS 140 1_555 B SG CYS 206 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 C SG CYS 23 C CYS 23 1_555 C SG CYS 89 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 C SG CYS 135 C CYS 134 1_555 C SG CYS 195 C CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 C SG CYS 135 C CYS 134 1_555 C SG CYS 195 C CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf12 D SG CYS 156 H CYS 140 1_555 D SG CYS 212 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 E SG CYS 23 L CYS 23 1_555 E SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf14 E SG CYS 134 L CYS 134 1_555 E SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 25 A ASN 343 1_555 F C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7S5Q _atom_sites.fract_transf_matrix[1][1] 0.011156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 601 530 NAG NAG . G 7 EDO A 1 602 531 EDO EDO . H 7 EDO A 1 603 532 EDO EDO . I 8 SO4 A 1 604 1 SO4 SO4 . J 8 SO4 A 1 605 3 SO4 SO4 . K 8 SO4 A 1 606 7 SO4 SO4 . L 8 SO4 A 1 607 8 SO4 SO4 . M 8 SO4 A 1 608 9 SO4 SO4 . N 8 SO4 A 1 609 10 SO4 SO4 . O 8 SO4 B 1 301 4 SO4 SO4 . P 7 EDO H 1 301 301 EDO EDO . Q 8 SO4 H 1 302 2 SO4 SO4 . R 8 SO4 H 1 303 6 SO4 SO4 . S 8 SO4 H 1 304 11 SO4 SO4 . T 7 EDO L 1 301 302 EDO EDO . U 7 EDO L 1 302 301 EDO EDO . V 8 SO4 L 1 303 5 SO4 SO4 . W 9 HOH A 1 701 37 HOH HOH . W 9 HOH A 2 702 16 HOH HOH . W 9 HOH A 3 703 30 HOH HOH . W 9 HOH A 4 704 8 HOH HOH . W 9 HOH A 5 705 18 HOH HOH . W 9 HOH A 6 706 13 HOH HOH . W 9 HOH A 7 707 4 HOH HOH . W 9 HOH A 8 708 2 HOH HOH . W 9 HOH A 9 709 1 HOH HOH . W 9 HOH A 10 710 21 HOH HOH . W 9 HOH A 11 711 5 HOH HOH . W 9 HOH A 12 712 26 HOH HOH . W 9 HOH A 13 713 28 HOH HOH . W 9 HOH A 14 714 10 HOH HOH . W 9 HOH A 15 715 3 HOH HOH . W 9 HOH A 16 716 22 HOH HOH . X 9 HOH B 1 401 38 HOH HOH . Y 9 HOH C 1 301 23 HOH HOH . Z 9 HOH H 1 401 25 HOH HOH . Z 9 HOH H 2 402 35 HOH HOH . Z 9 HOH H 3 403 6 HOH HOH . Z 9 HOH H 4 404 17 HOH HOH . Z 9 HOH H 5 405 19 HOH HOH . Z 9 HOH H 6 406 11 HOH HOH . Z 9 HOH H 7 407 7 HOH HOH . Z 9 HOH H 8 408 12 HOH HOH . Z 9 HOH H 9 409 32 HOH HOH . Z 9 HOH H 10 410 33 HOH HOH . Z 9 HOH H 11 411 9 HOH HOH . Z 9 HOH H 12 412 24 HOH HOH . Z 9 HOH H 13 413 15 HOH HOH . AA 9 HOH L 1 401 31 HOH HOH . AA 9 HOH L 2 402 14 HOH HOH . AA 9 HOH L 3 403 20 HOH HOH . AA 9 HOH L 4 404 36 HOH HOH . AA 9 HOH L 5 405 27 HOH HOH . AA 9 HOH L 6 406 29 HOH HOH . AA 9 HOH L 7 407 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 6 1.439 27.071 13.828 1 83.53 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . F 6 -0.073 27.218 14.062 1 87.49 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . F 6 -0.383 28.572 14.708 1 97.31 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . F 6 0.457 28.776 15.963 1 100.82 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . F 6 1.938 28.592 15.638 1 96.55 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . F 6 2.836 28.704 16.851 1 93.21 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . F 6 -1.927 26.336 12.702 1 80.92 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . F 6 -2.548 26.294 11.338 1 77.89 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . F 6 -0.81 27.066 12.816 1 83.44 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . F 6 -1.766 28.642 15.038 1 94.13 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . F 6 0.237 30.077 16.5 1 88.95 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . F 6 2.149 27.29 15.071 1 96.98 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . F 6 3.028 27.454 17.5 1 84.75 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . F 6 -2.415 25.738 13.656 1 82.24 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #