data_7S5V # _model_server_result.job_id 7tDFJ2tbgqFNDgujNDOA4Q _model_server_result.datetime_utc '2025-07-31 15:09:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1604}' # _entry.id 7S5V # _exptl.entry_id 7S5V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S5V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 720 E SER 721 1_555 C MG MG . E MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc2 A OE1 GLN 774 E GLN 775 1_555 C MG MG . E MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc3 A OG SER 1385 E SER 1386 1_555 D MG MG . E MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc4 B O1B ADP . E ADP 1601 1_555 D MG MG . E MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc5 C MG MG . E MG 1602 1_555 E O2G ATP . E ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc6 C MG MG . E MG 1602 1_555 E O3G ATP . E ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc7 C MG MG . E MG 1602 1_555 E O2B ATP . E ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc8 C MG MG . E MG 1602 1_555 E O3B ATP . E ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7S5V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP E 1 1601 2002 ADP ADP . C 3 MG E 1 1602 2003 MG MG . D 3 MG E 1 1603 2004 MG MG . E 4 ATP E 1 1604 2005 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 201.85 313.037 279.493 1 45.21 ? PG ATP 1604 E 1 HETATM 2 O O1G ATP . . . E 4 200.862 314.147 279.291 1 45.21 ? O1G ATP 1604 E 1 HETATM 3 O O2G ATP . . . E 4 201.264 311.656 279.503 1 45.21 ? O2G ATP 1604 E 1 HETATM 4 O O3G ATP . . . E 4 202.873 313.3 280.552 1 45.21 ? O3G ATP 1604 E 1 HETATM 5 P PB ATP . . . E 4 203.989 314.068 278.122 1 45.21 ? PB ATP 1604 E 1 HETATM 6 O O1B ATP . . . E 4 203.57 315.376 278.721 1 45.21 ? O1B ATP 1604 E 1 HETATM 7 O O2B ATP . . . E 4 205.169 313.334 278.69 1 45.21 ? O2B ATP 1604 E 1 HETATM 8 O O3B ATP . . . E 4 202.735 313.077 278.169 1 45.21 ? O3B ATP 1604 E 1 HETATM 9 P PA ATP . . . E 4 205.345 315.232 276.012 1 45.21 ? PA ATP 1604 E 1 HETATM 10 O O1A ATP . . . E 4 206.068 314.525 274.902 1 45.21 ? O1A ATP 1604 E 1 HETATM 11 O O2A ATP . . . E 4 206.061 315.697 277.233 1 45.21 ? O2A ATP 1604 E 1 HETATM 12 O O3A ATP . . . E 4 204.183 314.282 276.545 1 45.21 ? O3A ATP 1604 E 1 HETATM 13 O O5' ATP . . . E 4 204.575 316.514 275.438 1 45.21 ? O5' ATP 1604 E 1 HETATM 14 C C5' ATP . . . E 4 205.169 317.798 275.599 1 45.21 ? C5' ATP 1604 E 1 HETATM 15 C C4' ATP . . . E 4 204.654 318.747 274.528 1 45.21 ? C4' ATP 1604 E 1 HETATM 16 O O4' ATP . . . E 4 205.31 318.464 273.299 1 45.21 ? O4' ATP 1604 E 1 HETATM 17 C C3' ATP . . . E 4 203.167 318.596 274.3 1 45.21 ? C3' ATP 1604 E 1 HETATM 18 O O3' ATP . . . E 4 202.522 319.835 274.587 1 45.21 ? O3' ATP 1604 E 1 HETATM 19 C C2' ATP . . . E 4 202.994 318.3 272.833 1 45.21 ? C2' ATP 1604 E 1 HETATM 20 O O2' ATP . . . E 4 202.263 319.368 272.235 1 45.21 ? O2' ATP 1604 E 1 HETATM 21 C C1' ATP . . . E 4 204.383 318.257 272.242 1 45.21 ? C1' ATP 1604 E 1 HETATM 22 N N9 ATP . . . E 4 204.636 316.907 271.704 1 45.21 ? N9 ATP 1604 E 1 HETATM 23 C C8 ATP . . . E 4 204.607 315.784 272.43 1 45.21 ? C8 ATP 1604 E 1 HETATM 24 N N7 ATP . . . E 4 204.884 314.695 271.68 1 45.21 ? N7 ATP 1604 E 1 HETATM 25 C C5 ATP . . . E 4 205.095 315.132 270.434 1 45.21 ? C5 ATP 1604 E 1 HETATM 26 C C6 ATP . . . E 4 205.428 314.501 269.146 1 45.21 ? C6 ATP 1604 E 1 HETATM 27 N N6 ATP . . . E 4 205.591 313.161 269.062 1 45.21 ? N6 ATP 1604 E 1 HETATM 28 N N1 ATP . . . E 4 205.564 315.305 268.071 1 45.21 ? N1 ATP 1604 E 1 HETATM 29 C C2 ATP . . . E 4 205.4 316.636 268.161 1 45.21 ? C2 ATP 1604 E 1 HETATM 30 N N3 ATP . . . E 4 205.096 317.273 269.302 1 45.21 ? N3 ATP 1604 E 1 HETATM 31 C C4 ATP . . . E 4 204.931 316.587 270.451 1 45.21 ? C4 ATP 1604 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #