data_7S5Y
#
_model_server_result.job_id            600gqSVQTLQ7ogQ8M2LlOA 
_model_server_result.datetime_utc      '2024-11-04 23:13:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7s5y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1601}' 
#
_entry.id    7S5Y 
#
_exptl.entry_id    7S5Y 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7S5Y 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7S5Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 7 E CYS 7 1_555 E SG CYS 27 E CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 E OE1 GLN 775 E GLN 775 1_555 G MG MG . E MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc2 E OG SER 1386 E SER 1386 1_555 H MG MG . E MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc3 F O1B ADP . E ADP 1601 1_555 H MG MG . E MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc4 F O2B ADP . E ADP 1601 1_555 H MG MG . E MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? 
metalc ? metalc5 F O3A ADP . E ADP 1601 1_555 H MG MG . E MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc6 G MG MG . E MG 1602 1_555 I O2G ATP . E ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc7 G MG MG . E MG 1602 1_555 I O3B ATP . E ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc8 G MG MG . E MG 1602 1_555 I O3G ATP . E ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc9 G MG MG . E MG 1602 1_555 I O2B ATP . E ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7S5Y 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 ADP E 1 1601 2002 ADP ADP . 
G 4 MG E 1 1602 2003 MG MG . 
H 4 MG E 1 1603 2004 MG MG . 
I 5 ATP E 1 1604 2005 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . F 3 182.831 288.051 281.775 1 177.95 ? PB ADP 1601 E 1 
HETATM 2 O O1B ADP . . . F 3 181.819 289.14 281.582 1 177.95 ? O1B ADP 1601 E 1 
HETATM 3 O O2B ADP . . . F 3 184.178 288.565 282.204 1 177.95 ? O2B ADP 1601 E 1 
HETATM 4 O O3B ADP . . . F 3 182.32 286.874 282.563 1 177.95 ? O3B ADP 1601 E 1 
HETATM 5 P PA ADP . . . F 3 182.007 286.749 279.39 1 177.95 ? PA ADP 1601 E 1 
HETATM 6 O O1A ADP . . . F 3 182.263 287.174 277.97 1 177.95 ? O1A ADP 1601 E 1 
HETATM 7 O O2A ADP . . . F 3 180.627 287 279.931 1 177.95 ? O2A ADP 1601 E 1 
HETATM 8 O O3A ADP . . . F 3 183.111 287.492 280.294 1 177.95 ? O3A ADP 1601 E 1 
HETATM 9 O O5' ADP . . . F 3 182.354 285.187 279.478 1 177.95 ? O5' ADP 1601 E 1 
HETATM 10 C C5' ADP . . . F 3 181.751 284.311 280.419 1 177.95 ? C5' ADP 1601 E 1 
HETATM 11 C C4' ADP . . . F 3 182.124 282.916 279.957 1 177.95 ? C4' ADP 1601 E 1 
HETATM 12 O O4' ADP . . . F 3 181.657 282.747 278.621 1 177.95 ? O4' ADP 1601 E 1 
HETATM 13 C C3' ADP . . . F 3 183.633 282.758 279.93 1 177.95 ? C3' ADP 1601 E 1 
HETATM 14 O O3' ADP . . . F 3 184.046 281.785 280.889 1 177.95 ? O3' ADP 1601 E 1 
HETATM 15 C C2' ADP . . . F 3 183.985 282.274 278.541 1 177.95 ? C2' ADP 1601 E 1 
HETATM 16 O O2' ADP . . . F 3 184.602 280.988 278.613 1 177.95 ? O2' ADP 1601 E 1 
HETATM 17 C C1' ADP . . . F 3 182.671 282.174 277.797 1 177.95 ? C1' ADP 1601 E 1 
HETATM 18 N N9 ADP . . . F 3 182.783 282.951 276.545 1 177.95 ? N9 ADP 1601 E 1 
HETATM 19 C C8 ADP . . . F 3 182.978 284.276 276.465 1 177.95 ? C8 ADP 1601 E 1 
HETATM 20 N N7 ADP . . . F 3 183.039 284.684 275.176 1 177.95 ? N7 ADP 1601 E 1 
HETATM 21 C C5 ADP . . . F 3 182.89 283.595 274.411 1 177.95 ? C5 ADP 1601 E 1 
HETATM 22 C C6 ADP . . . F 3 182.843 283.299 272.964 1 177.95 ? C6 ADP 1601 E 1 
HETATM 23 N N6 ADP . . . F 3 182.987 284.282 272.046 1 177.95 ? N6 ADP 1601 E 1 
HETATM 24 N N1 ADP . . . F 3 182.659 282.016 272.581 1 177.95 ? N1 ADP 1601 E 1 
HETATM 25 C C2 ADP . . . F 3 182.514 281.016 273.47 1 177.95 ? C2 ADP 1601 E 1 
HETATM 26 N N3 ADP . . . F 3 182.541 281.218 274.798 1 177.95 ? N3 ADP 1601 E 1 
HETATM 27 C C4 ADP . . . F 3 182.726 282.453 275.315 1 177.95 ? C4 ADP 1601 E 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#