data_7S62 # _model_server_result.job_id NgAHz4i6A13SoNdHS7wbRw _model_server_result.datetime_utc '2024-10-20 19:14:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":2111}' # _entry.id 7S62 # _exptl.entry_id 7S62 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S62 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 42 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 122 A CYS 122 1_555 A SG CYS 205 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 262 A CYS 262 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 467 A CYS 467 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 591 A CYS 591 1_555 A SG CYS 758 A CYS 758 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 809 A CYS 809 1_555 A SG CYS 836 A CYS 836 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 1327 A CYS 1327 1_555 A SG CYS 1441 A CYS 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 64 A ASN 64 1_555 B C1 NAG . A NAG 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 81 A ASN 81 1_555 C C1 NAG . A NAG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 A ND2 ASN 242 A ASN 242 1_555 D C1 NAG . A NAG 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 285 A ASN 285 1_555 E C1 NAG . A NAG 2104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 A ND2 ASN 415 A ASN 415 1_555 F C1 NAG . A NAG 2105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 A ND2 ASN 472 A ASN 472 1_555 G C1 NAG . A NAG 2106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 A ND2 ASN 526 A ASN 526 1_555 H C1 NAG . A NAG 2107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 A ND2 ASN 578 A ASN 578 1_555 I C1 NAG . A NAG 2108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 A ND2 ASN 721 A ASN 721 1_555 J C1 NAG . A NAG 2109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 A ND2 ASN 773 A ASN 773 1_555 K C1 NAG . A NAG 2110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 A ND2 ASN 918 A ASN 918 1_555 L C1 NAG . A NAG 2111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 A ND2 ASN 977 A ASN 977 1_555 M C1 NAG . A NAG 2112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 A ND2 ASN 1096 A ASN 1096 1_555 N C1 NAG . A NAG 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale14 A ND2 ASN 1266 A ASN 1266 1_555 O C1 NAG . A NAG 2114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale15 A ND2 ASN 1286 A ASN 1286 1_555 P C1 NAG . A NAG 2115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale16 A ND2 ASN 1292 A ASN 1292 1_555 Q C1 NAG . A NAG 2116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale17 A ND2 ASN 1348 A ASN 1348 1_555 R C1 NAG . A NAG 2117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7S62 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 2101 2101 NAG NAG . C 2 NAG A 1 2102 2102 NAG NAG . D 2 NAG A 1 2103 2103 NAG NAG . E 2 NAG A 1 2104 2104 NAG NAG . F 2 NAG A 1 2105 2105 NAG NAG . G 2 NAG A 1 2106 2106 NAG NAG . H 2 NAG A 1 2107 2107 NAG NAG . I 2 NAG A 1 2108 2108 NAG NAG . J 2 NAG A 1 2109 2109 NAG NAG . K 2 NAG A 1 2110 2110 NAG NAG . L 2 NAG A 1 2111 2111 NAG NAG . M 2 NAG A 1 2112 2112 NAG NAG . N 2 NAG A 1 2113 2113 NAG NAG . O 2 NAG A 1 2114 2114 NAG NAG . P 2 NAG A 1 2115 2115 NAG NAG . Q 2 NAG A 1 2116 2116 NAG NAG . R 2 NAG A 1 2117 2117 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 2 271.837 274.218 197.371 1 76.8 ? C1 NAG 2111 A 1 HETATM 2 C C2 NAG . . . L 2 272.821 273.076 197.112 1 76.8 ? C2 NAG 2111 A 1 HETATM 3 C C3 NAG . . . L 2 273.399 272.562 198.429 1 76.8 ? C3 NAG 2111 A 1 HETATM 4 C C4 NAG . . . L 2 273.982 273.711 199.241 1 76.8 ? C4 NAG 2111 A 1 HETATM 5 C C5 NAG . . . L 2 272.952 274.827 199.402 1 76.8 ? C5 NAG 2111 A 1 HETATM 6 C C6 NAG . . . L 2 273.508 276.05 200.092 1 76.8 ? C6 NAG 2111 A 1 HETATM 7 C C7 NAG . . . L 2 271.151 271.279 196.778 1 76.8 ? C7 NAG 2111 A 1 HETATM 8 C C8 NAG . . . L 2 270.673 270.21 195.842 1 76.8 ? C8 NAG 2111 A 1 HETATM 9 N N2 NAG . . . L 2 272.204 271.994 196.357 1 76.8 ? N2 NAG 2111 A 1 HETATM 10 O O3 NAG . . . L 2 274.409 271.597 198.158 1 76.8 ? O3 NAG 2111 A 1 HETATM 11 O O4 NAG . . . L 2 274.372 273.247 200.529 1 76.8 ? O4 NAG 2111 A 1 HETATM 12 O O5 NAG . . . L 2 272.487 275.254 198.113 1 76.8 ? O5 NAG 2111 A 1 HETATM 13 O O6 NAG . . . L 2 272.58 276.587 201.025 1 76.8 ? O6 NAG 2111 A 1 HETATM 14 O O7 NAG . . . L 2 270.609 271.481 197.862 1 76.8 ? O7 NAG 2111 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #