data_7S67 # _model_server_result.job_id bU-Flg7JPv73oVjmkYtL2Q _model_server_result.datetime_utc '2025-03-13 17:51:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 7S67 # _exptl.entry_id 7S67 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 K N N ? 2 M N N ? 2 Q N N ? 2 U N N ? 2 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 53 A THR 53 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc2 A OG1 THR 295 A THR 295 1_555 J MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc3 G O2G ATP . A ATP 601 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc4 G O1B ATP . A ATP 601 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc5 G O1A ATP . A ATP 601 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc6 I O1B ADP . A ADP 603 1_555 J MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc7 K O2G ATP . A ATP 605 1_555 L MG MG . A MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc8 K O1B ATP . A ATP 605 1_555 L MG MG . A MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc9 L MG MG . A MG 606 1_555 F OG1 THR 53 F THR 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc10 B OG1 THR 53 B THR 53 1_555 N MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc11 B OG1 THR 295 B THR 295 1_555 P MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc12 M O2G ATP . B ATP 601 1_555 N MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc13 M O1B ATP . B ATP 601 1_555 N MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc14 M O1A ATP . B ATP 601 1_555 N MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc15 O O1B ADP . B ADP 603 1_555 P MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc16 C OG1 THR 53 C THR 53 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc17 C OG1 THR 295 C THR 295 1_555 T MG MG . C MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc18 Q O2G ATP . C ATP 601 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc19 Q O1B ATP . C ATP 601 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc20 Q O1A ATP . C ATP 601 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc21 S O1B ADP . C ADP 603 1_555 T MG MG . C MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc22 D OG1 THR 53 D THR 53 1_555 V MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc23 D OG1 THR 295 D THR 295 1_555 X MG MG . D MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc24 U O2G ATP . D ATP 601 1_555 V MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc25 U O1B ATP . D ATP 601 1_555 V MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc26 W O1B ADP . D ADP 603 1_555 X MG MG . D MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc27 E OG1 THR 53 E THR 53 1_555 Y MG MG . E MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc28 E OG1 THR 295 E THR 295 1_555 AA MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc29 Y MG MG . E MG 901 1_555 BA O1A ATP . F ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc30 Y MG MG . E MG 901 1_555 BA O2G ATP . F ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc31 Y MG MG . E MG 901 1_555 BA O1B ATP . F ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc32 Z O1B ADP . E ADP 902 1_555 AA MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc33 F OG1 THR 295 F THR 295 1_555 DA MG MG . F MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc34 CA O1B ADP . F ADP 602 1_555 DA MG MG . F MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7S67 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP A 1 601 900 ATP ATP . H 3 MG A 1 602 901 MG MG . I 4 ADP A 1 603 1000 ADP ADP . J 3 MG A 1 604 1001 MG MG . K 2 ATP A 1 605 900 ATP ATP . L 3 MG A 1 606 901 MG MG . M 2 ATP B 1 601 900 ATP ATP . N 3 MG B 1 602 901 MG MG . O 4 ADP B 1 603 1000 ADP ADP . P 3 MG B 1 604 1001 MG MG . Q 2 ATP C 1 601 900 ATP ATP . R 3 MG C 1 602 901 MG MG . S 4 ADP C 1 603 1000 ADP ADP . T 3 MG C 1 604 1001 MG MG . U 2 ATP D 1 601 900 ATP ATP . V 3 MG D 1 602 901 MG MG . W 4 ADP D 1 603 1000 ADP ADP . X 3 MG D 1 604 1001 MG MG . Y 3 MG E 1 901 901 MG MG . Z 4 ADP E 1 902 1000 ADP ADP . AA 3 MG E 1 903 1001 MG MG . BA 2 ATP F 1 601 900 ATP ATP . CA 4 ADP F 1 602 1000 ADP ADP . DA 3 MG F 1 603 1001 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 2 97.099 87.352 87.089 1 68.15 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . G 2 97.497 88.751 86.954 1 66.79 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . G 2 96.018 87.009 86.159 1 67.19 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . G 2 98.18 86.455 86.712 1 66.14 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . G 2 95.443 87.515 89.152 1 59.75 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . G 2 94.323 87.428 88.19 1 59.37 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . G 2 95.511 88.871 89.734 1 60.24 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . G 2 96.755 87.039 88.532 1 62.55 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . G 2 94.716 85.118 89.891 1 59.2 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . G 2 95.015 84.745 88.48 1 58.61 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . G 2 93.261 85.275 90.053 1 59.3 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . G 2 95.386 86.449 90.264 1 59.36 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . G 2 95.361 84.171 90.997 1 57.27 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . G 2 94.766 84.194 92.305 1 57.8 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . G 2 95.697 83.653 93.428 1 59.44 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . G 2 95.011 82.627 94.155 1 59.71 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . G 2 96.956 82.901 93.024 1 59.51 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . G 2 98.009 83.763 92.642 1 61.58 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . G 2 97.317 82.155 94.315 1 60.05 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . G 2 98.161 82.98 95.129 1 57.58 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . G 2 95.957 81.985 95.026 1 60.9 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . G 2 95.55 80.602 95.239 1 63.1 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . G 2 95.199 79.636 94.296 1 65.94 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . G 2 94.766 78.489 94.851 1 66.66 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . G 2 94.832 78.79 96.182 1 65.94 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . G 2 94.46 78.026 97.287 1 66.58 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . G 2 93.972 76.776 97.198 1 67.52 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . G 2 94.573 78.472 98.525 1 67.23 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . G 2 95.078 79.699 98.661 1 67.26 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . G 2 95.466 80.514 97.674 1 66.43 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . G 2 95.311 80.029 96.438 1 65.05 ? C4 ATP 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #