data_7S6D
#
_model_server_result.job_id            0f7kb7TTzLFYjFwlFPhHmw 
_model_server_result.datetime_utc      '2024-10-19 10:16:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7s6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1701}' 
#
_entry.id    7S6D 
#
_exptl.entry_id    7S6D 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7S6D 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7S6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 24 E CYS 24 1_555 D SG CYS 100 E CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 147 E CYS 147 1_555 D SG CYS 203 E CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 E SG CYS 39 G CYS 39 1_555 E SG CYS 109 G CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 F SG CYS 24 D CYS 24 1_555 F SG CYS 100 D CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 F SG CYS 147 D CYS 147 1_555 F SG CYS 203 D CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 G SG CYS 39 F CYS 39 1_555 G SG CYS 109 F CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7S6D 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          H 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           ATR 
_pdbx_nonpoly_scheme.pdb_strand_id    C 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1701 
_pdbx_nonpoly_scheme.auth_seq_num     1457 
_pdbx_nonpoly_scheme.pdb_mon_id       ATR 
_pdbx_nonpoly_scheme.auth_mon_id      NDP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ATR . . . H 4 193.211 273.663 211.811 1 172.96 ? PB ATR 1701 C 1 
HETATM 2 O O1B ATR . . . H 4 193.581 272.755 212.915 1 172.96 ? O1B ATR 1701 C 1 
HETATM 3 O O2B ATR . . . H 4 193.968 273.726 210.502 1 172.96 ? O2B ATR 1701 C 1 
HETATM 4 O O3B ATR . . . H 4 191.714 272.916 211.277 1 172.96 ? O3B ATR 1701 C 1 
HETATM 5 P PA ATR . . . H 4 192.853 276.207 211.254 1 172.96 ? PA ATR 1701 C 1 
HETATM 6 O O1A ATR . . . H 4 194.319 276.302 211.011 1 172.96 ? O1A ATR 1701 C 1 
HETATM 7 O O2A ATR . . . H 4 192.094 277.39 211.782 1 172.96 ? O2A ATR 1701 C 1 
HETATM 8 O O3A ATR . . . H 4 192.831 275.072 212.443 1 172.96 ? O3A ATR 1701 C 1 
HETATM 9 O O5' ATR . . . H 4 192.134 275.595 209.898 1 172.96 ? O5' ATR 1701 C 1 
HETATM 10 C C5' ATR . . . H 4 190.762 275.552 210.178 1 172.96 ? C5' ATR 1701 C 1 
HETATM 11 C C4' ATR . . . H 4 190.116 276.777 209.575 1 172.96 ? C4' ATR 1701 C 1 
HETATM 12 O O4' ATR . . . H 4 189.216 276.409 208.557 1 172.96 ? O4' ATR 1701 C 1 
HETATM 13 C C3' ATR . . . H 4 189.311 277.48 210.653 1 172.96 ? C3' ATR 1701 C 1 
HETATM 14 O O3' ATR . . . H 4 190.142 278.297 211.417 1 172.96 ? O3' ATR 1701 C 1 
HETATM 15 C C2' ATR . . . H 4 188.383 278.356 209.792 1 172.96 ? C2' ATR 1701 C 1 
HETATM 16 O O2' ATR . . . H 4 188.901 279.546 209.499 1 172.96 ? O2' ATR 1701 C 1 
HETATM 17 P P2' ATR . . . H 4 187.622 280.8 209.104 1 172.96 ? P2' ATR 1701 C 1 
HETATM 18 O O1P ATR . . . H 4 186.727 280.533 210.273 1 172.96 ? O1P ATR 1701 C 1 
HETATM 19 O O2P ATR . . . H 4 188.415 282.11 209.107 1 172.96 ? O2P ATR 1701 C 1 
HETATM 20 O O3P ATR . . . H 4 187.199 280.254 207.769 1 172.96 ? O3P ATR 1701 C 1 
HETATM 21 C C1' ATR . . . H 4 188.262 277.473 208.467 1 172.96 ? C1' ATR 1701 C 1 
HETATM 22 N N9 ATR . . . H 4 186.926 276.877 208.349 1 172.96 ? N9 ATR 1701 C 1 
HETATM 23 C C8 ATR . . . H 4 186.325 275.912 209.174 1 172.96 ? C8 ATR 1701 C 1 
HETATM 24 N N7 ATR . . . H 4 185.074 275.581 208.787 1 172.96 ? N7 ATR 1701 C 1 
HETATM 25 C C5 ATR . . . H 4 184.856 276.377 207.651 1 172.96 ? C5 ATR 1701 C 1 
HETATM 26 C C6 ATR . . . H 4 183.755 276.505 206.786 1 172.96 ? C6 ATR 1701 C 1 
HETATM 27 N N6 ATR . . . H 4 182.617 275.761 206.987 1 172.96 ? N6 ATR 1701 C 1 
HETATM 28 N N1 ATR . . . H 4 183.772 277.363 205.725 1 172.96 ? N1 ATR 1701 C 1 
HETATM 29 C C2 ATR . . . H 4 184.938 278.074 205.58 1 172.96 ? C2 ATR 1701 C 1 
HETATM 30 N N3 ATR . . . H 4 186.065 278.069 206.311 1 172.96 ? N3 ATR 1701 C 1 
HETATM 31 C C4 ATR . . . H 4 185.999 277.192 207.368 1 172.96 ? C4 ATR 1701 C 1 
HETATM 32 H "H5'1" ATR . . . H 4 190.355 274.734 209.852 1 172.96 ? "H5'1" ATR 1701 C 1 
HETATM 33 H "H5'2" ATR . . . H 4 190.616 275.553 211.134 1 172.96 ? "H5'2" ATR 1701 C 1 
HETATM 34 H H4' ATR . . . H 4 190.793 277.351 209.184 1 172.96 ? H4' ATR 1701 C 1 
HETATM 35 H H3' ATR . . . H 4 188.78 276.873 211.192 1 172.96 ? H3' ATR 1701 C 1 
HETATM 36 H H2' ATR . . . H 4 187.512 278.353 210.213 1 172.96 ? H2' ATR 1701 C 1 
HETATM 37 H H1' ATR . . . H 4 188.413 278.005 207.671 1 172.96 ? H1' ATR 1701 C 1 
HETATM 38 H H8 ATR . . . H 4 186.772 275.555 209.907 1 172.96 ? H8 ATR 1701 C 1 
HETATM 39 H HN61 ATR . . . H 4 182.639 274.911 206.857 1 172.96 ? HN61 ATR 1701 C 1 
HETATM 40 H HN62 ATR . . . H 4 181.894 276.151 207.24 1 172.96 ? HN62 ATR 1701 C 1 
HETATM 41 H H2 ATR . . . H 4 184.931 278.654 204.853 1 172.96 ? H2 ATR 1701 C 1 
#
_model_server_stats.io_time_ms              176 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           41 
#