data_7S6H # _model_server_result.job_id B3GerXzB3Mi7CUP43WGHpQ _model_server_result.datetime_utc '2024-11-05 00:14:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1101}' # _entry.id 7S6H # _exptl.entry_id 7S6H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.06 _cell.angle_gamma 90 _cell.entry_id 7S6H _cell.length_a 111.467 _cell.length_b 110.651 _cell.length_c 116.475 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,F,I,J,K,L,Q 1 1 C,E,G,H,M,N,O,P,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F SG CYS 41 A CYS 21 1_555 L ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 F SG CYS 44 A CYS 24 1_555 L ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc3 F ND1 HIS 73 A HIS 53 1_555 L ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc4 F SG CYS 76 A CYS 56 1_555 L ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc5 F SG CYS 205 A CYS 295 1_555 K ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc6 F SG CYS 208 A CYS 298 1_555 K ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc7 F SG CYS 221 A CYS 311 1_555 K ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc8 F SG CYS 231 A CYS 321 1_555 K ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc9 G SG CYS 41 C CYS 21 1_555 N ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc10 G SG CYS 44 C CYS 24 1_555 N ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc11 G ND1 HIS 73 C HIS 53 1_555 N ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc12 G SG CYS 76 C CYS 56 1_555 N ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc13 G SG CYS 205 C CYS 295 1_555 M ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc14 G SG CYS 208 C CYS 298 1_555 M ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc15 G SG CYS 221 C CYS 311 1_555 M ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc16 G SG CYS 231 C CYS 321 1_555 M ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? hydrog WATSON-CRICK hydrog1 C N3 DC 1 E DC 1 1_555 E N1 DG 5 F DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N4 DC 1 E DC 1 1_555 E O6 DG 5 F DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O2 DC 1 E DC 1 1_555 E N2 DG 5 F DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DG 2 E DG 2 1_555 E N3 DC 4 F DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N2 DG 2 E DG 2 1_555 E O2 DC 4 F DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C O6 DG 2 E DG 2 1_555 E N4 DC 4 F DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N1 DA 3 E DA 3 1_555 E N3 DT 3 F DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N6 DA 3 E DA 3 1_555 E O4 DT 3 F DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N3 DC 4 E DC 4 1_555 E N1 DG 2 F DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N4 DC 4 E DC 4 1_555 E O6 DG 2 F DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C O2 DC 4 E DC 4 1_555 E N2 DG 2 F DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N1 DG 5 E DG 5 1_555 E N3 DC 1 F DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N2 DG 5 E DG 5 1_555 E O2 DC 1 F DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C O6 DG 5 E DG 5 1_555 E N4 DC 1 F DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DC 1 M DC 1 1_555 B N1 DG 5 N DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 DC 1 M DC 1 1_555 B O6 DG 5 N DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 DC 1 M DC 1 1_555 B N2 DG 5 N DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 2 M DG 2 1_555 B N3 DC 4 N DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 2 M DG 2 1_555 B O2 DC 4 N DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 2 M DG 2 1_555 B N4 DC 4 N DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DA 3 M DA 3 1_555 B N3 DT 3 N DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N6 DA 3 M DA 3 1_555 B O4 DT 3 N DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DC 4 M DC 4 1_555 B N1 DG 2 N DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N4 DC 4 M DC 4 1_555 B O6 DG 2 N DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O2 DC 4 M DC 4 1_555 B N2 DG 2 N DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DG 5 M DG 5 1_555 B N3 DC 1 N DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N2 DG 5 M DG 5 1_555 B O2 DC 1 N DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O6 DG 5 M DG 5 1_555 B N4 DC 1 N DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 232 n n C1 C2 EDO sing 233 n n C1 H11 EDO sing 234 n n C1 H12 EDO sing 235 n n O1 HO1 EDO sing 236 n n C2 O2 EDO sing 237 n n C2 H21 EDO sing 238 n n C2 H22 EDO sing 239 n n O2 HO2 EDO sing 240 n n # _atom_sites.entry_id 7S6H _atom_sites.fract_transf_matrix[1][1] 0.008971 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004195 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 EDO B 1 1101 1102 EDO PGE . J 6 UHB B 1 1102 1103 UHB UHB . K 7 ZN A 1 401 400 ZN ZN . L 7 ZN A 1 402 500 ZN ZN . M 7 ZN C 1 401 400 ZN ZN . N 7 ZN C 1 402 500 ZN ZN . O 5 EDO D 1 1101 1102 EDO PGE . P 6 UHB D 1 1102 1103 UHB UHB . Q 8 HOH B 1 1201 5 HOH HOH . Q 8 HOH B 2 1202 9 HOH HOH . Q 8 HOH B 3 1203 4 HOH HOH . Q 8 HOH B 4 1204 1 HOH HOH . R 8 HOH C 1 501 7 HOH HOH . R 8 HOH C 2 502 2 HOH HOH . S 8 HOH D 1 1201 6 HOH HOH . S 8 HOH D 2 1202 10 HOH HOH . S 8 HOH D 3 1203 3 HOH HOH . S 8 HOH D 4 1204 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 5 46.949 43.002 45.743 1 117.9 ? C1 EDO 1101 B 1 HETATM 2 O O1 EDO . . . I 5 45.797 42.844 46.546 1 101.39 ? O1 EDO 1101 B 1 HETATM 3 C C2 EDO . . . I 5 47.472 44.421 45.875 1 129.34 ? C2 EDO 1101 B 1 HETATM 4 O O2 EDO . . . I 5 46.385 45.323 45.863 1 110.78 ? O2 EDO 1101 B 1 HETATM 5 H H11 EDO . . . I 5 47.74 42.297 46.053 1 141.76 ? H11 EDO 1101 B 1 HETATM 6 H H12 EDO . . . I 5 46.716 42.802 44.683 1 141.76 ? H12 EDO 1101 B 1 HETATM 7 H H21 EDO . . . I 5 48.044 44.506 46.815 1 155.49 ? H21 EDO 1101 B 1 HETATM 8 H H22 EDO . . . I 5 48.164 44.627 45.042 1 155.49 ? H22 EDO 1101 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #