data_7S70 # _model_server_result.job_id D223SGauA3hJpzpv7Ak9Lg _model_server_result.datetime_utc '2024-11-20 02:22:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7S70 # _exptl.entry_id 7S70 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 606.797 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(2S,3R)-4-(butylamino)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.89 _cell.angle_gamma 90 _cell.entry_id 7S70 _cell.length_a 55.12 _cell.length_b 80.278 _cell.length_c 85.286 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S70 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -55.12 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id 8H3 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 8H3 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.802 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C31 H54 N6 O6' _chem_comp.formula_weight 606.797 _chem_comp.id 8H3 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(2S,3R)-4-(butylamino)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C2 8H3 sing 1 n n C2 C4 8H3 sing 2 n n C26 C30 8H3 sing 3 n n C31 C30 8H3 sing 4 n n C4 C3 8H3 sing 5 n n C30 C11 8H3 sing 6 n n C30 C32 8H3 sing 7 n n C13 C16 8H3 sing 8 n n C13 N13 8H3 sing 9 n n C16 C34 8H3 sing 10 n n C16 C18 8H3 sing 11 n n O29 C9 8H3 doub 12 n n O38 C15 8H3 doub 13 n n C3 N2 8H3 sing 14 n n C11 C12 8H3 sing 15 n n C11 N10 8H3 sing 16 n n C29 C7 8H3 sing 17 n n N2 C1 8H3 sing 18 n n N13 C12 8H3 sing 19 n n N13 C14 8H3 sing 20 n n C12 O33 8H3 doub 21 n n C9 N10 8H3 sing 22 n n C9 N8 8H3 sing 23 n n C34 C18 8H3 sing 24 n n C34 C14 8H3 sing 25 n n C15 C14 8H3 sing 26 n n C15 N16 8H3 sing 27 n n C18 C25 8H3 sing 28 n n C18 C23 8H3 sing 29 n n C21 C22 8H3 sing 30 n n C21 C20 8H3 sing 31 n n N8 C7 8H3 sing 32 n n C7 C28 8H3 sing 33 n n C7 C27 8H3 sing 34 n n C22 N23 8H3 sing 35 n n C1 C8 8H3 sing 36 n n C1 O5 8H3 doub 37 n n O9 C8 8H3 sing 38 n n C17 N16 8H3 sing 39 n n C17 C8 8H3 sing 40 n n C17 C19 8H3 sing 41 n n C20 C19 8H3 sing 42 n n C20 C24 8H3 sing 43 n n N23 C24 8H3 sing 44 n n C24 O26 8H3 doub 45 n n C11 H1 8H3 sing 46 n n C13 H2 8H3 sing 47 n n C13 H3 8H3 sing 48 n n C14 H4 8H3 sing 49 n n C16 H5 8H3 sing 50 n n C17 H6 8H3 sing 51 n n C19 H7 8H3 sing 52 n n C19 H8 8H3 sing 53 n n C2 H9 8H3 sing 54 n n C2 H10 8H3 sing 55 n n C20 H11 8H3 sing 56 n n C21 H12 8H3 sing 57 n n C21 H13 8H3 sing 58 n n C22 H14 8H3 sing 59 n n C23 H15 8H3 sing 60 n n C23 H16 8H3 sing 61 n n C23 H17 8H3 sing 62 n n C25 H18 8H3 sing 63 n n C25 H19 8H3 sing 64 n n C25 H20 8H3 sing 65 n n C26 H21 8H3 sing 66 n n C26 H22 8H3 sing 67 n n C26 H23 8H3 sing 68 n n C27 H24 8H3 sing 69 n n C27 H25 8H3 sing 70 n n C27 H26 8H3 sing 71 n n C28 H27 8H3 sing 72 n n C28 H28 8H3 sing 73 n n C28 H29 8H3 sing 74 n n C29 H30 8H3 sing 75 n n C29 H31 8H3 sing 76 n n C29 H32 8H3 sing 77 n n C3 H33 8H3 sing 78 n n C3 H34 8H3 sing 79 n n C31 H35 8H3 sing 80 n n C31 H36 8H3 sing 81 n n C31 H37 8H3 sing 82 n n C32 H38 8H3 sing 83 n n C32 H39 8H3 sing 84 n n C32 H40 8H3 sing 85 n n C34 H41 8H3 sing 86 n n C4 H42 8H3 sing 87 n n C4 H43 8H3 sing 88 n n C5 H44 8H3 sing 89 n n C5 H45 8H3 sing 90 n n C5 H46 8H3 sing 91 n n C8 H47 8H3 sing 92 n n N10 H48 8H3 sing 93 n n N16 H49 8H3 sing 94 n n N2 H50 8H3 sing 95 n n N8 H51 8H3 sing 96 n n O9 H52 8H3 sing 97 n n C22 H53 8H3 sing 98 n n N23 H54 8H3 sing 99 n n # _atom_sites.entry_id 7S70 _atom_sites.fract_transf_matrix[1][1] 0.018142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002515 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012457 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8H3 A 1 401 401 8H3 i74 . C 3 HOH A 1 501 2 HOH HOH . C 3 HOH A 2 502 10 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 9 HOH HOH . C 3 HOH A 6 506 13 HOH HOH . C 3 HOH A 7 507 11 HOH HOH . C 3 HOH A 8 508 19 HOH HOH . C 3 HOH A 9 509 18 HOH HOH . C 3 HOH A 10 510 7 HOH HOH . C 3 HOH A 11 511 12 HOH HOH . C 3 HOH A 12 512 1 HOH HOH . C 3 HOH A 13 513 5 HOH HOH . C 3 HOH A 14 514 6 HOH HOH . C 3 HOH A 15 515 17 HOH HOH . C 3 HOH A 16 516 8 HOH HOH . C 3 HOH A 17 517 15 HOH HOH . C 3 HOH A 18 518 16 HOH HOH . C 3 HOH A 19 519 14 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8H3 . . . B 2 -14.511 -10.595 -16.503 1 49.13 ? C1 8H3 401 A 1 HETATM 2 C C11 8H3 . . . B 2 -10.226 -17.773 -18.115 1 55.18 ? C11 8H3 401 A 1 HETATM 3 C C12 8H3 . . . B 2 -10.561 -16.468 -17.421 1 55.24 ? C12 8H3 401 A 1 HETATM 4 C C13 8H3 . . . B 2 -8.761 -15.242 -18.729 1 52.7 ? C13 8H3 401 A 1 HETATM 5 C C14 8H3 . . . B 2 -9.954 -14.218 -16.888 1 53.28 ? C14 8H3 401 A 1 HETATM 6 C C15 8H3 . . . B 2 -11.279 -13.559 -17.164 1 51.95 ? C15 8H3 401 A 1 HETATM 7 C C16 8H3 . . . B 2 -8.109 -13.878 -18.463 1 56.1 ? C16 8H3 401 A 1 HETATM 8 C C17 8H3 . . . B 2 -13.324 -12.736 -16.157 1 53.84 ? C17 8H3 401 A 1 HETATM 9 C C18 8H3 . . . B 2 -7.389 -13.77 -17.106 1 57.3 ? C18 8H3 401 A 1 HETATM 10 C C19 8H3 . . . B 2 -14.181 -13.543 -15.188 1 49.6 ? C19 8H3 401 A 1 HETATM 11 C C2 8H3 . . . B 2 -14.364 -8.42 -20.581 1 55.88 ? C2 8H3 401 A 1 HETATM 12 C C20 8H3 . . . B 2 -14.251 -14.959 -15.745 1 48.38 ? C20 8H3 401 A 1 HETATM 13 C C21 8H3 . . . B 2 -15.265 -14.955 -16.884 1 47.19 ? C21 8H3 401 A 1 HETATM 14 C C22 8H3 . . . B 2 -16.289 -16.03 -16.524 1 51.16 ? C22 8H3 401 A 1 HETATM 15 C C23 8H3 . . . B 2 -6.964 -15.158 -16.605 1 53.71 ? C23 8H3 401 A 1 HETATM 16 C C24 8H3 . . . B 2 -14.771 -15.988 -14.776 1 51.76 ? C24 8H3 401 A 1 HETATM 17 C C25 8H3 . . . B 2 -6.312 -12.677 -17.027 1 52.97 ? C25 8H3 401 A 1 HETATM 18 C C26 8H3 . . . B 2 -10.686 -19.26 -20.013 1 56.01 ? C26 8H3 401 A 1 HETATM 19 C C27 8H3 . . . B 2 -6.763 -22.047 -15.74 1 56.5 ? C27 8H3 401 A 1 HETATM 20 C C28 8H3 . . . B 2 -5.895 -19.701 -15.905 1 57.69 ? C28 8H3 401 A 1 HETATM 21 C C29 8H3 . . . B 2 -6.252 -21.133 -17.95 1 60.39 ? C29 8H3 401 A 1 HETATM 22 C C3 8H3 . . . B 2 -15.018 -8.834 -18.154 1 48.65 ? C3 8H3 401 A 1 HETATM 23 C C30 8H3 . . . B 2 -11.343 -18.447 -18.908 1 51.72 ? C30 8H3 401 A 1 HETATM 24 C C31 8H3 . . . B 2 -12.282 -17.43 -19.545 1 53.62 ? C31 8H3 401 A 1 HETATM 25 C C32 8H3 . . . B 2 -12.1 -19.399 -17.991 1 50.43 ? C32 8H3 401 A 1 HETATM 26 C C34 8H3 . . . B 2 -8.828 -13.27 -17.27 1 53.01 ? C34 8H3 401 A 1 HETATM 27 C C4 8H3 . . . B 2 -14.131 -8.051 -19.118 1 53.19 ? C4 8H3 401 A 1 HETATM 28 C C5 8H3 . . . B 2 -13.208 -7.971 -21.462 1 49.68 ? C5 8H3 401 A 1 HETATM 29 C C7 8H3 . . . B 2 -6.766 -20.761 -16.56 1 58.8 ? C7 8H3 401 A 1 HETATM 30 C C8 8H3 . . . B 2 -13.304 -11.229 -15.894 1 50.43 ? C8 8H3 401 A 1 HETATM 31 C C9 8H3 . . . B 2 -8.524 -19.209 -17.375 1 53.82 ? C9 8H3 401 A 1 HETATM 32 N N10 8H3 . . . B 2 -9.735 -18.738 -17.156 1 48.21 ? N10 8H3 401 A 1 HETATM 33 N N13 8H3 . . . B 2 -9.8 -15.405 -17.711 1 55.22 ? N13 8H3 401 A 1 HETATM 34 N N16 8H3 . . . B 2 -11.992 -13.295 -16.076 1 54.23 ? N16 8H3 401 A 1 HETATM 35 N N2 8H3 . . . B 2 -14.371 -10.062 -17.722 1 54.79 ? N2 8H3 401 A 1 HETATM 36 N N23 8H3 . . . B 2 -15.871 -16.564 -15.242 1 49.54 ? N23 8H3 401 A 1 HETATM 37 N N8 8H3 . . . B 2 -8.109 -20.205 -16.588 1 55.58 ? N8 8H3 401 A 1 HETATM 38 O O26 8H3 . . . B 2 -14.242 -16.262 -13.71 1 50.42 ? O26 8H3 401 A 1 HETATM 39 O O29 8H3 . . . B 2 -7.88 -18.723 -18.3 1 58.64 ? O29 8H3 401 A 1 HETATM 40 O O33 8H3 . . . B 2 -11.447 -16.397 -16.577 1 51.61 ? O33 8H3 401 A 1 HETATM 41 O O38 8H3 . . . B 2 -11.664 -13.293 -18.295 1 48.84 ? O38 8H3 401 A 1 HETATM 42 O O5 8H3 . . . B 2 -15.539 -10.622 -15.867 1 52.13 ? O5 8H3 401 A 1 HETATM 43 O O9 8H3 . . . B 2 -12.135 -10.566 -16.415 1 55.48 ? O9 8H3 401 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 75 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #