data_7S72 # _model_server_result.job_id VzsO_e7jV07YzXMqCGWocg _model_server_result.datetime_utc '2024-11-20 02:32:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7S72 # _exptl.entry_id 7S72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 640.813 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(2S,3R)-4-(benzylamino)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.1 _cell.angle_gamma 90 _cell.entry_id 7S72 _cell.length_a 55.25 _cell.length_b 79.963 _cell.length_c 85.101 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -55.25 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id 8I0 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 8I0 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.809 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H52 N6 O6' _chem_comp.formula_weight 640.813 _chem_comp.id 8I0 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(2S,3R)-4-(benzylamino)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C10 8I0 doub 1 n y C6 C5 8I0 sing 2 n y C10 C33 8I0 sing 3 n y C5 C4 8I0 doub 4 n y C33 C2 8I0 doub 5 n y C4 C2 8I0 sing 6 n y C26 C30 8I0 sing 7 n n C2 C3 8I0 sing 8 n n C31 C30 8I0 sing 9 n n C30 C11 8I0 sing 10 n n C30 C32 8I0 sing 11 n n C3 N2 8I0 sing 12 n n C13 C16 8I0 sing 13 n n C13 N13 8I0 sing 14 n n C16 C34 8I0 sing 15 n n C16 C18 8I0 sing 16 n n O29 C9 8I0 doub 17 n n O38 C15 8I0 doub 18 n n C11 N10 8I0 sing 19 n n C11 C12 8I0 sing 20 n n N2 C1 8I0 sing 21 n n N13 C12 8I0 sing 22 n n N13 C14 8I0 sing 23 n n C34 C18 8I0 sing 24 n n C34 C14 8I0 sing 25 n n C9 N10 8I0 sing 26 n n C9 N8 8I0 sing 27 n n C28 C7 8I0 sing 28 n n C25 C18 8I0 sing 29 n n C15 C14 8I0 sing 30 n n C15 N16 8I0 sing 31 n n C21 C22 8I0 sing 32 n n C21 C20 8I0 sing 33 n n C12 O33 8I0 doub 34 n n C18 C23 8I0 sing 35 n n C22 N23 8I0 sing 36 n n C27 C7 8I0 sing 37 n n O1 C8 8I0 sing 38 n n C1 C8 8I0 sing 39 n n C1 O5 8I0 doub 40 n n C17 N16 8I0 sing 41 n n C17 C8 8I0 sing 42 n n C17 C19 8I0 sing 43 n n C7 N8 8I0 sing 44 n n C7 C29 8I0 sing 45 n n C20 C19 8I0 sing 46 n n C20 C24 8I0 sing 47 n n N23 C24 8I0 sing 48 n n C24 O26 8I0 doub 49 n n C10 H1 8I0 sing 50 n n C11 H2 8I0 sing 51 n n C13 H3 8I0 sing 52 n n C13 H4 8I0 sing 53 n n C14 H5 8I0 sing 54 n n C16 H6 8I0 sing 55 n n C17 H7 8I0 sing 56 n n C19 H8 8I0 sing 57 n n C19 H9 8I0 sing 58 n n C20 H10 8I0 sing 59 n n C21 H11 8I0 sing 60 n n C21 H12 8I0 sing 61 n n C22 H13 8I0 sing 62 n n C22 H14 8I0 sing 63 n n C23 H15 8I0 sing 64 n n C23 H16 8I0 sing 65 n n C23 H17 8I0 sing 66 n n C25 H18 8I0 sing 67 n n C25 H19 8I0 sing 68 n n C25 H20 8I0 sing 69 n n C26 H21 8I0 sing 70 n n C26 H22 8I0 sing 71 n n C26 H23 8I0 sing 72 n n C27 H24 8I0 sing 73 n n C27 H25 8I0 sing 74 n n C27 H26 8I0 sing 75 n n C28 H27 8I0 sing 76 n n C28 H28 8I0 sing 77 n n C28 H29 8I0 sing 78 n n C29 H30 8I0 sing 79 n n C29 H31 8I0 sing 80 n n C29 H32 8I0 sing 81 n n C3 H33 8I0 sing 82 n n C3 H34 8I0 sing 83 n n C31 H35 8I0 sing 84 n n C31 H36 8I0 sing 85 n n C31 H37 8I0 sing 86 n n C32 H38 8I0 sing 87 n n C32 H39 8I0 sing 88 n n C32 H40 8I0 sing 89 n n C33 H41 8I0 sing 90 n n C34 H42 8I0 sing 91 n n C4 H43 8I0 sing 92 n n C5 H44 8I0 sing 93 n n C6 H45 8I0 sing 94 n n C8 H46 8I0 sing 95 n n N10 H47 8I0 sing 96 n n N16 H48 8I0 sing 97 n n N2 H49 8I0 sing 98 n n N23 H50 8I0 sing 99 n n N8 H51 8I0 sing 100 n n O1 H52 8I0 sing 101 n n # _atom_sites.entry_id 7S72 _atom_sites.fract_transf_matrix[1][1] 0.0181 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002577 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8I0 A 1 401 401 8I0 i76 . C 3 HOH A 1 501 13 HOH HOH . C 3 HOH A 2 502 35 HOH HOH . C 3 HOH A 3 503 34 HOH HOH . C 3 HOH A 4 504 9 HOH HOH . C 3 HOH A 5 505 17 HOH HOH . C 3 HOH A 6 506 16 HOH HOH . C 3 HOH A 7 507 1 HOH HOH . C 3 HOH A 8 508 33 HOH HOH . C 3 HOH A 9 509 2 HOH HOH . C 3 HOH A 10 510 5 HOH HOH . C 3 HOH A 11 511 10 HOH HOH . C 3 HOH A 12 512 24 HOH HOH . C 3 HOH A 13 513 18 HOH HOH . C 3 HOH A 14 514 22 HOH HOH . C 3 HOH A 15 515 6 HOH HOH . C 3 HOH A 16 516 23 HOH HOH . C 3 HOH A 17 517 11 HOH HOH . C 3 HOH A 18 518 4 HOH HOH . C 3 HOH A 19 519 7 HOH HOH . C 3 HOH A 20 520 8 HOH HOH . C 3 HOH A 21 521 30 HOH HOH . C 3 HOH A 22 522 14 HOH HOH . C 3 HOH A 23 523 26 HOH HOH . C 3 HOH A 24 524 12 HOH HOH . C 3 HOH A 25 525 19 HOH HOH . C 3 HOH A 26 526 21 HOH HOH . C 3 HOH A 27 527 20 HOH HOH . C 3 HOH A 28 528 15 HOH HOH . C 3 HOH A 29 529 3 HOH HOH . C 3 HOH A 30 530 31 HOH HOH . C 3 HOH A 31 531 32 HOH HOH . C 3 HOH A 32 532 28 HOH HOH . C 3 HOH A 33 533 36 HOH HOH . C 3 HOH A 34 534 27 HOH HOH . C 3 HOH A 35 535 29 HOH HOH . C 3 HOH A 36 536 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8I0 . . . B 2 -14.271 -10.702 -16.538 1 47.31 ? C1 8I0 401 A 1 HETATM 2 C C10 8I0 . . . B 2 -14.095 -7.717 -21.8 1 55.95 ? C10 8I0 401 A 1 HETATM 3 C C11 8I0 . . . B 2 -9.992 -18.023 -18.023 1 50.07 ? C11 8I0 401 A 1 HETATM 4 C C12 8I0 . . . B 2 -10.188 -16.805 -17.16 1 53.78 ? C12 8I0 401 A 1 HETATM 5 C C13 8I0 . . . B 2 -8.473 -15.57 -18.566 1 52.62 ? C13 8I0 401 A 1 HETATM 6 C C14 8I0 . . . B 2 -9.722 -14.48 -16.812 1 49.28 ? C14 8I0 401 A 1 HETATM 7 C C15 8I0 . . . B 2 -11.096 -14.04 -17.193 1 51.15 ? C15 8I0 401 A 1 HETATM 8 C C16 8I0 . . . B 2 -7.922 -14.148 -18.437 1 50.53 ? C16 8I0 401 A 1 HETATM 9 C C17 8I0 . . . B 2 -13.082 -12.875 -16.417 1 50.05 ? C17 8I0 401 A 1 HETATM 10 C C18 8I0 . . . B 2 -7.227 -13.848 -17.104 1 52.17 ? C18 8I0 401 A 1 HETATM 11 C C19 8I0 . . . B 2 -14.055 -13.653 -15.523 1 48.42 ? C19 8I0 401 A 1 HETATM 12 C C2 8I0 . . . B 2 -14.268 -9.118 -19.839 1 55.15 ? C2 8I0 401 A 1 HETATM 13 C C20 8I0 . . . B 2 -14.015 -15.13 -15.88 1 44.98 ? C20 8I0 401 A 1 HETATM 14 C C21 8I0 . . . B 2 -14.765 -15.378 -17.182 1 46.3 ? C21 8I0 401 A 1 HETATM 15 C C22 8I0 . . . B 2 -16.081 -16.046 -16.788 1 48.02 ? C22 8I0 401 A 1 HETATM 16 C C23 8I0 . . . B 2 -6.743 -15.12 -16.4 1 51.75 ? C23 8I0 401 A 1 HETATM 17 C C24 8I0 . . . B 2 -14.793 -15.908 -14.879 1 46.09 ? C24 8I0 401 A 1 HETATM 18 C C25 8I0 . . . B 2 -6.184 -12.736 -17.212 1 50.56 ? C25 8I0 401 A 1 HETATM 19 C C26 8I0 . . . B 2 -10.742 -19.438 -19.891 1 51.48 ? C26 8I0 401 A 1 HETATM 20 C C27 8I0 . . . B 2 -5.446 -20.124 -16.653 1 58.46 ? C27 8I0 401 A 1 HETATM 21 C C28 8I0 . . . B 2 -6.926 -22.091 -17.282 1 58.48 ? C28 8I0 401 A 1 HETATM 22 C C29 8I0 . . . B 2 -6.396 -21.633 -14.946 1 52.27 ? C29 8I0 401 A 1 HETATM 23 C C3 8I0 . . . B 2 -15.041 -9.606 -18.643 1 41.58 ? C3 8I0 401 A 1 HETATM 24 C C30 8I0 . . . B 2 -11.201 -18.462 -18.837 1 45.7 ? C30 8I0 401 A 1 HETATM 25 C C31 8I0 . . . B 2 -11.857 -17.261 -19.502 1 47.19 ? C31 8I0 401 A 1 HETATM 26 C C32 8I0 . . . B 2 -12.181 -19.226 -17.969 1 51.5 ? C32 8I0 401 A 1 HETATM 27 C C33 8I0 . . . B 2 -14.831 -8.172 -20.702 1 55.28 ? C33 8I0 401 A 1 HETATM 28 C C34 8I0 . . . B 2 -8.694 -13.473 -17.316 1 47.66 ? C34 8I0 401 A 1 HETATM 29 C C4 8I0 . . . B 2 -12.975 -9.606 -20.084 1 58.59 ? C4 8I0 401 A 1 HETATM 30 C C5 8I0 . . . B 2 -12.248 -9.156 -21.192 1 57.78 ? C5 8I0 401 A 1 HETATM 31 C C6 8I0 . . . B 2 -12.808 -8.21 -22.055 1 57.27 ? C6 8I0 401 A 1 HETATM 32 C C7 8I0 . . . B 2 -6.66 -20.968 -16.287 1 56.79 ? C7 8I0 401 A 1 HETATM 33 C C8 8I0 . . . B 2 -13.022 -11.384 -16.077 1 46.86 ? C8 8I0 401 A 1 HETATM 34 C C9 8I0 . . . B 2 -8.366 -19.506 -17.306 1 52.55 ? C9 8I0 401 A 1 HETATM 35 N N10 8I0 . . . B 2 -9.606 -19.098 -17.167 1 48.8 ? N10 8I0 401 A 1 HETATM 36 N N13 8I0 . . . B 2 -9.493 -15.715 -17.525 1 51.97 ? N13 8I0 401 A 1 HETATM 37 N N16 8I0 . . . B 2 -11.782 -13.478 -16.211 1 47.77 ? N16 8I0 401 A 1 HETATM 38 N N2 8I0 . . . B 2 -14.105 -9.831 -17.557 1 47.37 ? N2 8I0 401 A 1 HETATM 39 N N23 8I0 . . . B 2 -15.974 -16.274 -15.357 1 46.17 ? N23 8I0 401 A 1 HETATM 40 N N8 8I0 . . . B 2 -7.791 -20.061 -16.233 1 52.06 ? N8 8I0 401 A 1 HETATM 41 O O1 8I0 . . . B 2 -11.886 -10.71 -16.639 1 45.41 ? O1 8I0 401 A 1 HETATM 42 O O26 8I0 . . . B 2 -14.35 -16.172 -13.783 1 47.4 ? O26 8I0 401 A 1 HETATM 43 O O29 8I0 . . . B 2 -7.832 -19.351 -18.395 1 52.17 ? O29 8I0 401 A 1 HETATM 44 O O33 8I0 . . . B 2 -10.913 -16.849 -16.159 1 49.38 ? O33 8I0 401 A 1 HETATM 45 O O38 8I0 . . . B 2 -11.522 -14.212 -18.329 1 50.37 ? O38 8I0 401 A 1 HETATM 46 O O5 8I0 . . . B 2 -15.315 -10.964 -15.944 1 43.95 ? O5 8I0 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 46 #