data_7S7R # _model_server_result.job_id p9YA3NihXz8UmycR7UxUNQ _model_server_result.datetime_utc '2024-10-20 01:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 7S7R # _exptl.entry_id 7S7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7S7R _cell.length_a 50.931 _cell.length_b 50.931 _cell.length_c 322.764 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 31 1_555 A SG CYS 29 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 43 A CYS 67 1_555 A SG CYS 114 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf3 A SG CYS 57 A CYS 81 1_555 A SG CYS 112 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf4 A SG CYS 155 A CYS 179 1_555 A SG CYS 187 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 A SG CYS 201 A CYS 225 1_555 A SG CYS 262 A CYS 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 212 A CYS 236 1_555 A SG CYS 260 A CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.023 ? covale ? covale1 A ND2 ASN 218 A ASN 242 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 B O GLY 15 B GLY 15 1_555 F NA NA . B NA 202 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc2 B OG SER 85 B SER 85 1_555 F NA NA . B NA 202 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? metalc ? metalc3 B O ASN 109 B ASN 109 1_555 F NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc4 F NA NA . B NA 202 1_555 H O HOH . B HOH 330 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc5 F NA NA . B NA 202 1_555 H O HOH . B HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc6 F NA NA . B NA 202 1_555 H O HOH . B HOH 360 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7S7R _atom_sites.fract_transf_matrix[1][1] 0.019634 _atom_sites.fract_transf_matrix[1][2] 0.011336 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 401 305 NAG NAG . D 4 SCN A 1 402 401 SCN SCN . E 4 SCN B 1 201 201 SCN SCN . F 5 NA B 1 202 1 NA NA . G 6 HOH A 1 501 160 HOH HOH . G 6 HOH A 2 502 47 HOH HOH . G 6 HOH A 3 503 128 HOH HOH . G 6 HOH A 4 504 69 HOH HOH . G 6 HOH A 5 505 210 HOH HOH . G 6 HOH A 6 506 115 HOH HOH . G 6 HOH A 7 507 203 HOH HOH . G 6 HOH A 8 508 137 HOH HOH . G 6 HOH A 9 509 32 HOH HOH . G 6 HOH A 10 510 219 HOH HOH . G 6 HOH A 11 511 142 HOH HOH . G 6 HOH A 12 512 30 HOH HOH . G 6 HOH A 13 513 139 HOH HOH . G 6 HOH A 14 514 211 HOH HOH . G 6 HOH A 15 515 27 HOH HOH . G 6 HOH A 16 516 66 HOH HOH . G 6 HOH A 17 517 171 HOH HOH . G 6 HOH A 18 518 36 HOH HOH . G 6 HOH A 19 519 112 HOH HOH . G 6 HOH A 20 520 158 HOH HOH . G 6 HOH A 21 521 16 HOH HOH . G 6 HOH A 22 522 133 HOH HOH . G 6 HOH A 23 523 14 HOH HOH . G 6 HOH A 24 524 90 HOH HOH . G 6 HOH A 25 525 55 HOH HOH . G 6 HOH A 26 526 22 HOH HOH . G 6 HOH A 27 527 168 HOH HOH . G 6 HOH A 28 528 26 HOH HOH . G 6 HOH A 29 529 107 HOH HOH . G 6 HOH A 30 530 80 HOH HOH . G 6 HOH A 31 531 60 HOH HOH . G 6 HOH A 32 532 3 HOH HOH . G 6 HOH A 33 533 184 HOH HOH . G 6 HOH A 34 534 73 HOH HOH . G 6 HOH A 35 535 57 HOH HOH . G 6 HOH A 36 536 56 HOH HOH . G 6 HOH A 37 537 180 HOH HOH . G 6 HOH A 38 538 4 HOH HOH . G 6 HOH A 39 539 179 HOH HOH . G 6 HOH A 40 540 152 HOH HOH . G 6 HOH A 41 541 109 HOH HOH . G 6 HOH A 42 542 236 HOH HOH . G 6 HOH A 43 543 113 HOH HOH . G 6 HOH A 44 544 46 HOH HOH . G 6 HOH A 45 545 161 HOH HOH . G 6 HOH A 46 546 187 HOH HOH . G 6 HOH A 47 547 17 HOH HOH . G 6 HOH A 48 548 40 HOH HOH . G 6 HOH A 49 549 215 HOH HOH . G 6 HOH A 50 550 95 HOH HOH . G 6 HOH A 51 551 45 HOH HOH . G 6 HOH A 52 552 44 HOH HOH . G 6 HOH A 53 553 7 HOH HOH . G 6 HOH A 54 554 78 HOH HOH . G 6 HOH A 55 555 204 HOH HOH . G 6 HOH A 56 556 43 HOH HOH . G 6 HOH A 57 557 145 HOH HOH . G 6 HOH A 58 558 54 HOH HOH . G 6 HOH A 59 559 2 HOH HOH . G 6 HOH A 60 560 83 HOH HOH . G 6 HOH A 61 561 71 HOH HOH . G 6 HOH A 62 562 186 HOH HOH . G 6 HOH A 63 563 172 HOH HOH . G 6 HOH A 64 564 67 HOH HOH . G 6 HOH A 65 565 104 HOH HOH . G 6 HOH A 66 566 199 HOH HOH . G 6 HOH A 67 567 214 HOH HOH . G 6 HOH A 68 568 96 HOH HOH . G 6 HOH A 69 569 89 HOH HOH . G 6 HOH A 70 570 33 HOH HOH . G 6 HOH A 71 571 53 HOH HOH . G 6 HOH A 72 572 201 HOH HOH . G 6 HOH A 73 573 85 HOH HOH . G 6 HOH A 74 574 110 HOH HOH . G 6 HOH A 75 575 75 HOH HOH . G 6 HOH A 76 576 146 HOH HOH . G 6 HOH A 77 577 121 HOH HOH . G 6 HOH A 78 578 97 HOH HOH . G 6 HOH A 79 579 65 HOH HOH . G 6 HOH A 80 580 93 HOH HOH . G 6 HOH A 81 581 84 HOH HOH . G 6 HOH A 82 582 25 HOH HOH . G 6 HOH A 83 583 94 HOH HOH . G 6 HOH A 84 584 151 HOH HOH . G 6 HOH A 85 585 20 HOH HOH . G 6 HOH A 86 586 100 HOH HOH . G 6 HOH A 87 587 166 HOH HOH . G 6 HOH A 88 588 99 HOH HOH . G 6 HOH A 89 589 225 HOH HOH . G 6 HOH A 90 590 35 HOH HOH . G 6 HOH A 91 591 10 HOH HOH . G 6 HOH A 92 592 21 HOH HOH . G 6 HOH A 93 593 51 HOH HOH . G 6 HOH A 94 594 8 HOH HOH . G 6 HOH A 95 595 62 HOH HOH . G 6 HOH A 96 596 118 HOH HOH . G 6 HOH A 97 597 70 HOH HOH . G 6 HOH A 98 598 162 HOH HOH . G 6 HOH A 99 599 68 HOH HOH . G 6 HOH A 100 600 230 HOH HOH . G 6 HOH A 101 601 143 HOH HOH . G 6 HOH A 102 602 87 HOH HOH . G 6 HOH A 103 603 167 HOH HOH . G 6 HOH A 104 604 13 HOH HOH . G 6 HOH A 105 605 183 HOH HOH . G 6 HOH A 106 606 147 HOH HOH . G 6 HOH A 107 607 82 HOH HOH . G 6 HOH A 108 608 105 HOH HOH . G 6 HOH A 109 609 135 HOH HOH . G 6 HOH A 110 610 116 HOH HOH . G 6 HOH A 111 611 212 HOH HOH . G 6 HOH A 112 612 170 HOH HOH . G 6 HOH A 113 613 185 HOH HOH . G 6 HOH A 114 614 103 HOH HOH . G 6 HOH A 115 615 144 HOH HOH . G 6 HOH A 116 616 88 HOH HOH . G 6 HOH A 117 617 126 HOH HOH . G 6 HOH A 118 618 208 HOH HOH . G 6 HOH A 119 619 49 HOH HOH . G 6 HOH A 120 620 72 HOH HOH . G 6 HOH A 121 621 163 HOH HOH . G 6 HOH A 122 622 190 HOH HOH . G 6 HOH A 123 623 77 HOH HOH . G 6 HOH A 124 624 102 HOH HOH . G 6 HOH A 125 625 209 HOH HOH . G 6 HOH A 126 626 224 HOH HOH . G 6 HOH A 127 627 173 HOH HOH . G 6 HOH A 128 628 58 HOH HOH . G 6 HOH A 129 629 194 HOH HOH . G 6 HOH A 130 630 220 HOH HOH . G 6 HOH A 131 631 181 HOH HOH . G 6 HOH A 132 632 39 HOH HOH . G 6 HOH A 133 633 226 HOH HOH . G 6 HOH A 134 634 153 HOH HOH . G 6 HOH A 135 635 149 HOH HOH . G 6 HOH A 136 636 101 HOH HOH . G 6 HOH A 137 637 221 HOH HOH . G 6 HOH A 138 638 114 HOH HOH . G 6 HOH A 139 639 154 HOH HOH . G 6 HOH A 140 640 141 HOH HOH . G 6 HOH A 141 641 227 HOH HOH . G 6 HOH A 142 642 159 HOH HOH . G 6 HOH A 143 643 164 HOH HOH . G 6 HOH A 144 644 76 HOH HOH . G 6 HOH A 145 645 140 HOH HOH . G 6 HOH A 146 646 150 HOH HOH . G 6 HOH A 147 647 123 HOH HOH . G 6 HOH A 148 648 207 HOH HOH . H 6 HOH B 1 301 229 HOH HOH . H 6 HOH B 2 302 177 HOH HOH . H 6 HOH B 3 303 29 HOH HOH . H 6 HOH B 4 304 216 HOH HOH . H 6 HOH B 5 305 91 HOH HOH . H 6 HOH B 6 306 6 HOH HOH . H 6 HOH B 7 307 98 HOH HOH . H 6 HOH B 8 308 37 HOH HOH . H 6 HOH B 9 309 59 HOH HOH . H 6 HOH B 10 310 42 HOH HOH . H 6 HOH B 11 311 174 HOH HOH . H 6 HOH B 12 312 28 HOH HOH . H 6 HOH B 13 313 34 HOH HOH . H 6 HOH B 14 314 1 HOH HOH . H 6 HOH B 15 315 136 HOH HOH . H 6 HOH B 16 316 9 HOH HOH . H 6 HOH B 17 317 15 HOH HOH . H 6 HOH B 18 318 157 HOH HOH . H 6 HOH B 19 319 48 HOH HOH . H 6 HOH B 20 320 169 HOH HOH . H 6 HOH B 21 321 111 HOH HOH . H 6 HOH B 22 322 5 HOH HOH . H 6 HOH B 23 323 74 HOH HOH . H 6 HOH B 24 324 23 HOH HOH . H 6 HOH B 25 325 218 HOH HOH . H 6 HOH B 26 326 50 HOH HOH . H 6 HOH B 27 327 11 HOH HOH . H 6 HOH B 28 328 134 HOH HOH . H 6 HOH B 29 329 79 HOH HOH . H 6 HOH B 30 330 18 HOH HOH . H 6 HOH B 31 331 131 HOH HOH . H 6 HOH B 32 332 106 HOH HOH . H 6 HOH B 33 333 138 HOH HOH . H 6 HOH B 34 334 12 HOH HOH . H 6 HOH B 35 335 63 HOH HOH . H 6 HOH B 36 336 120 HOH HOH . H 6 HOH B 37 337 122 HOH HOH . H 6 HOH B 38 338 19 HOH HOH . H 6 HOH B 39 339 165 HOH HOH . H 6 HOH B 40 340 38 HOH HOH . H 6 HOH B 41 341 52 HOH HOH . H 6 HOH B 42 342 175 HOH HOH . H 6 HOH B 43 343 64 HOH HOH . H 6 HOH B 44 344 132 HOH HOH . H 6 HOH B 45 345 189 HOH HOH . H 6 HOH B 46 346 124 HOH HOH . H 6 HOH B 47 347 24 HOH HOH . H 6 HOH B 48 348 213 HOH HOH . H 6 HOH B 49 349 86 HOH HOH . H 6 HOH B 50 350 156 HOH HOH . H 6 HOH B 51 351 41 HOH HOH . H 6 HOH B 52 352 233 HOH HOH . H 6 HOH B 53 353 81 HOH HOH . H 6 HOH B 54 354 125 HOH HOH . H 6 HOH B 55 355 192 HOH HOH . H 6 HOH B 56 356 31 HOH HOH . H 6 HOH B 57 357 235 HOH HOH . H 6 HOH B 58 358 130 HOH HOH . H 6 HOH B 59 359 188 HOH HOH . H 6 HOH B 60 360 217 HOH HOH . H 6 HOH B 61 361 108 HOH HOH . H 6 HOH B 62 362 61 HOH HOH . H 6 HOH B 63 363 92 HOH HOH . H 6 HOH B 64 364 191 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -38.531 _atom_site.Cartn_y 2.733 _atom_site.Cartn_z 1.657 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #