data_7S87 # _model_server_result.job_id -PCBasGw6OhrtiUA3FcG9A _model_server_result.datetime_utc '2025-01-10 21:12:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 7S87 # _exptl.entry_id 7S87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S87 _cell.length_a 124.726 _cell.length_b 161.093 _cell.length_c 92.569 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall 'C 2 2' _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 M N N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 342 n y N1 C6 ORO sing 343 n y N1 HN1 ORO sing 344 n n C2 O2 ORO doub 345 n n C2 N3 ORO sing 346 n y N3 C4 ORO sing 347 n y N3 HN3 ORO sing 348 n n C4 O4 ORO doub 349 n n C4 C5 ORO sing 350 n y C5 C6 ORO doub 351 n y C5 H5 ORO sing 352 n n C6 C7 ORO sing 353 n n C7 O71 ORO doub 354 n n C7 O72 ORO sing 355 n n O72 HO7 ORO sing 356 n n # _atom_sites.entry_id 7S87 _atom_sites.fract_transf_matrix[1][1] 0.008018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8IE A 1 601 571 8IE LIG . D 3 FMN A 1 602 573 FMN FMN . E 4 ORO A 1 603 593 ORO ORO . F 5 ACT A 1 604 601 ACT ACT . G 6 P4K A 1 605 611 P4K P4K . H 7 SO4 A 1 606 701 SO4 SO4 . I 2 8IE A 1 607 556 8IE LIG . J 2 8IE B 1 601 556 8IE LIG . K 2 8IE B 1 602 571 8IE LIG . L 3 FMN B 1 603 573 FMN FMN . M 4 ORO B 1 604 593 ORO ORO . N 7 SO4 B 1 605 701 SO4 SO4 . O 8 HOH A 1 701 14 HOH HOH . O 8 HOH A 2 702 81 HOH HOH . O 8 HOH A 3 703 75 HOH HOH . O 8 HOH A 4 704 80 HOH HOH . O 8 HOH A 5 705 11 HOH HOH . O 8 HOH A 6 706 52 HOH HOH . O 8 HOH A 7 707 23 HOH HOH . O 8 HOH A 8 708 19 HOH HOH . O 8 HOH A 9 709 30 HOH HOH . O 8 HOH A 10 710 24 HOH HOH . O 8 HOH A 11 711 8 HOH HOH . O 8 HOH A 12 712 3 HOH HOH . O 8 HOH A 13 713 55 HOH HOH . O 8 HOH A 14 714 27 HOH HOH . O 8 HOH A 15 715 32 HOH HOH . O 8 HOH A 16 716 18 HOH HOH . O 8 HOH A 17 717 76 HOH HOH . O 8 HOH A 18 718 6 HOH HOH . O 8 HOH A 19 719 109 HOH HOH . O 8 HOH A 20 720 9 HOH HOH . O 8 HOH A 21 721 83 HOH HOH . O 8 HOH A 22 722 10 HOH HOH . O 8 HOH A 23 723 78 HOH HOH . O 8 HOH A 24 724 7 HOH HOH . O 8 HOH A 25 725 22 HOH HOH . O 8 HOH A 26 726 40 HOH HOH . O 8 HOH A 27 727 48 HOH HOH . O 8 HOH A 28 728 42 HOH HOH . O 8 HOH A 29 729 95 HOH HOH . O 8 HOH A 30 730 4 HOH HOH . O 8 HOH A 31 731 41 HOH HOH . O 8 HOH A 32 732 1 HOH HOH . O 8 HOH A 33 733 38 HOH HOH . O 8 HOH A 34 734 104 HOH HOH . O 8 HOH A 35 735 26 HOH HOH . O 8 HOH A 36 736 71 HOH HOH . O 8 HOH A 37 737 2 HOH HOH . O 8 HOH A 38 738 46 HOH HOH . O 8 HOH A 39 739 28 HOH HOH . O 8 HOH A 40 740 53 HOH HOH . O 8 HOH A 41 741 54 HOH HOH . O 8 HOH A 42 742 12 HOH HOH . O 8 HOH A 43 743 73 HOH HOH . O 8 HOH A 44 744 5 HOH HOH . O 8 HOH A 45 745 72 HOH HOH . O 8 HOH A 46 746 15 HOH HOH . O 8 HOH A 47 747 97 HOH HOH . O 8 HOH A 48 748 99 HOH HOH . O 8 HOH A 49 749 21 HOH HOH . O 8 HOH A 50 750 61 HOH HOH . O 8 HOH A 51 751 84 HOH HOH . O 8 HOH A 52 752 36 HOH HOH . O 8 HOH A 53 753 77 HOH HOH . O 8 HOH A 54 754 25 HOH HOH . O 8 HOH A 55 755 50 HOH HOH . O 8 HOH A 56 756 85 HOH HOH . O 8 HOH A 57 757 74 HOH HOH . O 8 HOH A 58 758 89 HOH HOH . O 8 HOH A 59 759 69 HOH HOH . O 8 HOH A 60 760 51 HOH HOH . P 8 HOH B 1 701 86 HOH HOH . P 8 HOH B 2 702 91 HOH HOH . P 8 HOH B 3 703 34 HOH HOH . P 8 HOH B 4 704 35 HOH HOH . P 8 HOH B 5 705 20 HOH HOH . P 8 HOH B 6 706 87 HOH HOH . P 8 HOH B 7 707 16 HOH HOH . P 8 HOH B 8 708 31 HOH HOH . P 8 HOH B 9 709 13 HOH HOH . P 8 HOH B 10 710 47 HOH HOH . P 8 HOH B 11 711 110 HOH HOH . P 8 HOH B 12 712 88 HOH HOH . P 8 HOH B 13 713 17 HOH HOH . P 8 HOH B 14 714 43 HOH HOH . P 8 HOH B 15 715 39 HOH HOH . P 8 HOH B 16 716 100 HOH HOH . P 8 HOH B 17 717 37 HOH HOH . P 8 HOH B 18 718 44 HOH HOH . P 8 HOH B 19 719 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . E 4 6.447 52.69 34.255 1 44.01 ? N1 ORO 603 A 1 HETATM 2 C C2 ORO . . . E 4 6.828 51.395 34.214 1 43.68 ? C2 ORO 603 A 1 HETATM 3 O O2 ORO . . . E 4 7.86 51.081 34.71 1 41.6 ? O2 ORO 603 A 1 HETATM 4 N N3 ORO . . . E 4 6.034 50.474 33.609 1 42.82 ? N3 ORO 603 A 1 HETATM 5 C C4 ORO . . . E 4 4.888 50.844 33.052 1 42.12 ? C4 ORO 603 A 1 HETATM 6 O O4 ORO . . . E 4 4.183 50.05 32.518 1 35.42 ? O4 ORO 603 A 1 HETATM 7 C C5 ORO . . . E 4 4.517 52.147 33.091 1 48.4 ? C5 ORO 603 A 1 HETATM 8 C C6 ORO . . . E 4 5.307 53.062 33.703 1 45.18 ? C6 ORO 603 A 1 HETATM 9 C C7 ORO . . . E 4 4.895 54.529 33.754 1 49.68 ? C7 ORO 603 A 1 HETATM 10 O O71 ORO . . . E 4 4.462 55.107 32.718 1 50.82 ? O71 ORO 603 A 1 HETATM 11 O O72 ORO . . . E 4 5.006 55.16 34.838 1 53.63 ? O72 ORO 603 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #