data_7S8P
#
_model_server_result.job_id            UyuWIHA8dFEz1zGGUDWYEQ 
_model_server_result.datetime_utc      '2024-11-21 14:03:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7s8p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    7S8P 
#
_exptl.entry_id    7S8P 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              355.471 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(1r,3R,5S,7R)-3,5-dimethyltricyclo[3.3.1.1~3,7~]decane-1-carbonyl]-D-phenylalanine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7S8P 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7S8P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 E CYS 22 1_555 D SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 D SG CYS 159 E CYS 147 1_555 D SG CYS 229 E CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 E SG CYS 311 R CYS 161 1_555 E SG CYS 323 R CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C22 H29 N O3' 
_chem_comp.formula_weight    355.471 
_chem_comp.id                8IX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(1r,3R,5S,7R)-3,5-dimethyltricyclo[3.3.1.1~3,7~]decane-1-carbonyl]-D-phenylalanine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C08 8IX sing 1 n n 
C13 C14 8IX sing 2 n n 
C16 C14 8IX sing 3 n n 
C08 C09 8IX sing 4 n n 
C08 C07 8IX sing 5 n n 
C14 C15 8IX sing 6 n n 
C14 C17 8IX sing 7 n n 
C09 C10 8IX sing 8 n n 
C07 C06 8IX sing 9 n n 
C15 C10 8IX sing 10 n n 
C17 C06 8IX sing 11 n n 
C10 C12 8IX sing 12 n n 
C10 C11 8IX sing 13 n n 
C06 C12 8IX sing 14 n n 
C06 C05 8IX sing 15 n n 
O18 C05 8IX doub 16 n n 
C05 N04 8IX sing 17 n n 
N04 C03 8IX sing 18 n n 
O26 C02 8IX doub 19 n n 
O01 C02 8IX sing 20 n n 
C02 C03 8IX sing 21 n n 
C03 C19 8IX sing 22 n n 
C19 C20 8IX sing 23 n n 
C21 C20 8IX doub 24 n y 
C21 C22 8IX sing 25 n y 
C20 C25 8IX sing 26 n y 
C22 C23 8IX doub 27 n y 
C25 C24 8IX doub 28 n y 
C23 C24 8IX sing 29 n y 
C13 H1 8IX sing 30 n n 
C13 H2 8IX sing 31 n n 
C15 H3 8IX sing 32 n n 
C15 H4 8IX sing 33 n n 
C17 H5 8IX sing 34 n n 
C17 H6 8IX sing 35 n n 
C21 H7 8IX sing 36 n n 
C22 H8 8IX sing 37 n n 
C24 H9 8IX sing 38 n n 
C03 H10 8IX sing 39 n n 
C07 H11 8IX sing 40 n n 
C07 H12 8IX sing 41 n n 
C08 H13 8IX sing 42 n n 
C09 H14 8IX sing 43 n n 
C09 H15 8IX sing 44 n n 
C11 H16 8IX sing 45 n n 
C11 H17 8IX sing 46 n n 
C11 H18 8IX sing 47 n n 
C12 H19 8IX sing 48 n n 
C12 H20 8IX sing 49 n n 
C16 H21 8IX sing 50 n n 
C16 H22 8IX sing 51 n n 
C16 H23 8IX sing 52 n n 
C19 H24 8IX sing 53 n n 
C19 H25 8IX sing 54 n n 
C23 H26 8IX sing 55 n n 
C25 H27 8IX sing 56 n n 
N04 H28 8IX sing 57 n n 
O01 H29 8IX sing 58 n n 
#
_atom_sites.entry_id                     7S8P 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           8IX 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       8IX 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 8IX . . . F 6 122.158 95.984 84.403 1 172.98 ? C10 8IX 401 R 1 
HETATM 2 C C13 8IX . . . F 6 123.416 96.34 81.754 1 172.98 ? C13 8IX 401 R 1 
HETATM 3 C C15 8IX . . . F 6 121.751 97.228 83.532 1 172.98 ? C15 8IX 401 R 1 
HETATM 4 C C17 8IX . . . F 6 124.267 97.847 83.624 1 172.98 ? C17 8IX 401 R 1 
HETATM 5 C C20 8IX . . . F 6 127.48 97.7 90.084 1 172.98 ? C20 8IX 401 R 1 
HETATM 6 C C21 8IX . . . F 6 128.721 97.087 90.048 1 172.98 ? C21 8IX 401 R 1 
HETATM 7 C C22 8IX . . . F 6 129.653 97.387 91.019 1 172.98 ? C22 8IX 401 R 1 
HETATM 8 C C24 8IX . . . F 6 128.085 98.897 92.057 1 172.98 ? C24 8IX 401 R 1 
HETATM 9 C C02 8IX . . . F 6 127.757 98.401 87.117 1 172.98 ? C02 8IX 401 R 1 
HETATM 10 C C03 8IX . . . F 6 126.879 97.251 87.582 1 172.98 ? C03 8IX 401 R 1 
HETATM 11 C C05 8IX . . . F 6 125.778 96.761 85.353 1 172.98 ? C05 8IX 401 R 1 
HETATM 12 C C06 8IX . . . F 6 124.551 96.617 84.469 1 172.98 ? C06 8IX 401 R 1 
HETATM 13 C C07 8IX . . . F 6 124.842 95.488 83.505 1 172.98 ? C07 8IX 401 R 1 
HETATM 14 C C08 8IX . . . F 6 123.699 95.131 82.598 1 172.98 ? C08 8IX 401 R 1 
HETATM 15 C C09 8IX . . . F 6 122.485 94.871 83.408 1 172.98 ? C09 8IX 401 R 1 
HETATM 16 C C11 8IX . . . F 6 120.98 95.476 85.315 1 172.98 ? C11 8IX 401 R 1 
HETATM 17 C C12 8IX . . . F 6 123.32 96.417 85.276 1 172.98 ? C12 8IX 401 R 1 
HETATM 18 C C14 8IX . . . F 6 123.055 97.584 82.66 1 172.98 ? C14 8IX 401 R 1 
HETATM 19 C C16 8IX . . . F 6 122.782 98.753 81.825 1 172.98 ? C16 8IX 401 R 1 
HETATM 20 C C19 8IX . . . F 6 126.422 97.41 89.035 1 172.98 ? C19 8IX 401 R 1 
HETATM 21 C C23 8IX . . . F 6 129.326 98.289 92.018 1 172.98 ? C23 8IX 401 R 1 
HETATM 22 C C25 8IX . . . F 6 127.161 98.6 91.086 1 172.98 ? C25 8IX 401 R 1 
HETATM 23 N N04 8IX . . . F 6 125.688 97.149 86.746 1 172.98 ? N04 8IX 401 R 1 
HETATM 24 O O01 8IX . . . F 6 127.288 99.547 87.002 1 172.98 ? O01 8IX 401 R 1 
HETATM 25 O O18 8IX . . . F 6 126.831 96.532 84.881 1 172.98 ? O18 8IX 401 R 1 
HETATM 26 O O26 8IX . . . F 6 128.954 98.182 86.828 1 172.98 ? O26 8IX 401 R 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           26 
#