data_7S8W # _model_server_result.job_id wlMbtFf021Fm_YzrQ8KeDQ _model_server_result.datetime_utc '2024-10-20 18:52:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 7S8W # _exptl.entry_id 7S8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7S8W _cell.length_a 213.742 _cell.length_b 213.742 _cell.length_c 253.077 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_767 -x+8/3,-x+y+4/3,-z+7/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 427.484 246.808002 590.513 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 189 A ASP 189 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A OE2 GLU 214 A GLU 214 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc3 A OD2 ASP 239 A ASP 239 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc4 E O09 8JI . A 8JI 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc5 E O10 8JI . A 8JI 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc6 F MG MG . A MG 402 1_555 N O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc7 B OD2 ASP 189 B ASP 189 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc8 B OE2 GLU 214 B GLU 214 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc9 B OD2 ASP 239 B ASP 239 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc10 G O09 8JI . B 8JI 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc11 G O10 8JI . B 8JI 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc12 H MG MG . B MG 402 1_555 O O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc13 C OD2 ASP 189 C ASP 189 1_555 K MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc14 C OE2 GLU 214 C GLU 214 1_555 K MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc15 C OD2 ASP 239 C ASP 239 1_555 K MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc16 J O09 8JI . C 8JI 402 1_555 K MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc17 J O10 8JI . C 8JI 402 1_555 K MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc18 K MG MG . C MG 403 1_555 P O HOH . C HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc19 D OD2 ASP 189 D ASP 189 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc20 D OE2 GLU 214 D GLU 214 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc21 D OD2 ASP 239 D ASP 239 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc22 L O09 8JI . D 8JI 401 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc23 L O10 8JI . D 8JI 401 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc24 M MG MG . D MG 402 1_555 Q O HOH . D HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 7S8W _atom_sites.fract_transf_matrix[1][1] 0.004679 _atom_sites.fract_transf_matrix[1][2] 0.002701 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 8JI A 1 401 369 8JI LIG . F 3 MG A 1 402 1 MG MG . G 2 8JI B 1 401 369 8JI LIG . H 3 MG B 1 402 2 MG MG . I 4 1PE C 1 401 1003 1PE 1PE . J 2 8JI C 1 402 369 8JI LIG . K 3 MG C 1 403 4 MG MG . L 2 8JI D 1 401 369 8JI LIG . M 3 MG D 1 402 3 MG MG . N 5 HOH A 1 501 398 HOH HOH . N 5 HOH A 2 502 394 HOH HOH . N 5 HOH A 3 503 264 HOH HOH . N 5 HOH A 4 504 392 HOH HOH . N 5 HOH A 5 505 17 HOH HOH . N 5 HOH A 6 506 30 HOH HOH . N 5 HOH A 7 507 107 HOH HOH . N 5 HOH A 8 508 38 HOH HOH . N 5 HOH A 9 509 90 HOH HOH . N 5 HOH A 10 510 173 HOH HOH . N 5 HOH A 11 511 260 HOH HOH . N 5 HOH A 12 512 389 HOH HOH . N 5 HOH A 13 513 178 HOH HOH . N 5 HOH A 14 514 390 HOH HOH . N 5 HOH A 15 515 124 HOH HOH . N 5 HOH A 16 516 13 HOH HOH . N 5 HOH A 17 517 256 HOH HOH . N 5 HOH A 18 518 84 HOH HOH . N 5 HOH A 19 519 72 HOH HOH . N 5 HOH A 20 520 240 HOH HOH . N 5 HOH A 21 521 26 HOH HOH . N 5 HOH A 22 522 363 HOH HOH . N 5 HOH A 23 523 234 HOH HOH . N 5 HOH A 24 524 218 HOH HOH . N 5 HOH A 25 525 257 HOH HOH . N 5 HOH A 26 526 149 HOH HOH . N 5 HOH A 27 527 110 HOH HOH . N 5 HOH A 28 528 214 HOH HOH . N 5 HOH A 29 529 145 HOH HOH . N 5 HOH A 30 530 233 HOH HOH . N 5 HOH A 31 531 138 HOH HOH . N 5 HOH A 32 532 376 HOH HOH . N 5 HOH A 33 533 241 HOH HOH . N 5 HOH A 34 534 116 HOH HOH . N 5 HOH A 35 535 170 HOH HOH . N 5 HOH A 36 536 287 HOH HOH . N 5 HOH A 37 537 135 HOH HOH . N 5 HOH A 38 538 275 HOH HOH . N 5 HOH A 39 539 117 HOH HOH . N 5 HOH A 40 540 375 HOH HOH . N 5 HOH A 41 541 189 HOH HOH . N 5 HOH A 42 542 108 HOH HOH . O 5 HOH B 1 501 269 HOH HOH . O 5 HOH B 2 502 53 HOH HOH . O 5 HOH B 3 503 268 HOH HOH . O 5 HOH B 4 504 395 HOH HOH . O 5 HOH B 5 505 187 HOH HOH . O 5 HOH B 6 506 384 HOH HOH . O 5 HOH B 7 507 11 HOH HOH . O 5 HOH B 8 508 45 HOH HOH . O 5 HOH B 9 509 44 HOH HOH . O 5 HOH B 10 510 112 HOH HOH . O 5 HOH B 11 511 137 HOH HOH . O 5 HOH B 12 512 278 HOH HOH . O 5 HOH B 13 513 156 HOH HOH . O 5 HOH B 14 514 7 HOH HOH . O 5 HOH B 15 515 85 HOH HOH . O 5 HOH B 16 516 168 HOH HOH . O 5 HOH B 17 517 364 HOH HOH . O 5 HOH B 18 518 249 HOH HOH . O 5 HOH B 19 519 133 HOH HOH . O 5 HOH B 20 520 78 HOH HOH . O 5 HOH B 21 521 296 HOH HOH . O 5 HOH B 22 522 333 HOH HOH . O 5 HOH B 23 523 43 HOH HOH . O 5 HOH B 24 524 37 HOH HOH . O 5 HOH B 25 525 100 HOH HOH . O 5 HOH B 26 526 188 HOH HOH . O 5 HOH B 27 527 220 HOH HOH . O 5 HOH B 28 528 391 HOH HOH . O 5 HOH B 29 529 129 HOH HOH . O 5 HOH B 30 530 393 HOH HOH . O 5 HOH B 31 531 150 HOH HOH . O 5 HOH B 32 532 380 HOH HOH . O 5 HOH B 33 533 25 HOH HOH . O 5 HOH B 34 534 337 HOH HOH . O 5 HOH B 35 535 330 HOH HOH . P 5 HOH C 1 501 70 HOH HOH . P 5 HOH C 2 502 200 HOH HOH . P 5 HOH C 3 503 397 HOH HOH . P 5 HOH C 4 504 29 HOH HOH . P 5 HOH C 5 505 261 HOH HOH . P 5 HOH C 6 506 64 HOH HOH . P 5 HOH C 7 507 80 HOH HOH . P 5 HOH C 8 508 14 HOH HOH . P 5 HOH C 9 509 32 HOH HOH . P 5 HOH C 10 510 167 HOH HOH . P 5 HOH C 11 511 47 HOH HOH . P 5 HOH C 12 512 19 HOH HOH . P 5 HOH C 13 513 243 HOH HOH . P 5 HOH C 14 514 79 HOH HOH . P 5 HOH C 15 515 154 HOH HOH . P 5 HOH C 16 516 73 HOH HOH . P 5 HOH C 17 517 153 HOH HOH . P 5 HOH C 18 518 186 HOH HOH . P 5 HOH C 19 519 102 HOH HOH . P 5 HOH C 20 520 48 HOH HOH . P 5 HOH C 21 521 65 HOH HOH . P 5 HOH C 22 522 160 HOH HOH . P 5 HOH C 23 523 126 HOH HOH . P 5 HOH C 24 524 88 HOH HOH . P 5 HOH C 25 525 284 HOH HOH . P 5 HOH C 26 526 132 HOH HOH . P 5 HOH C 27 527 139 HOH HOH . P 5 HOH C 28 528 265 HOH HOH . P 5 HOH C 29 529 325 HOH HOH . P 5 HOH C 30 530 148 HOH HOH . P 5 HOH C 31 531 359 HOH HOH . Q 5 HOH D 1 501 396 HOH HOH . Q 5 HOH D 2 502 36 HOH HOH . Q 5 HOH D 3 503 304 HOH HOH . Q 5 HOH D 4 504 28 HOH HOH . Q 5 HOH D 5 505 297 HOH HOH . Q 5 HOH D 6 506 346 HOH HOH . Q 5 HOH D 7 507 20 HOH HOH . Q 5 HOH D 8 508 288 HOH HOH . Q 5 HOH D 9 509 142 HOH HOH . Q 5 HOH D 10 510 1 HOH HOH . Q 5 HOH D 11 511 172 HOH HOH . Q 5 HOH D 12 512 361 HOH HOH . Q 5 HOH D 13 513 219 HOH HOH . Q 5 HOH D 14 514 230 HOH HOH . Q 5 HOH D 15 515 165 HOH HOH . Q 5 HOH D 16 516 157 HOH HOH . Q 5 HOH D 17 517 204 HOH HOH . Q 5 HOH D 18 518 105 HOH HOH . Q 5 HOH D 19 519 381 HOH HOH . Q 5 HOH D 20 520 185 HOH HOH . Q 5 HOH D 21 521 179 HOH HOH . Q 5 HOH D 22 522 388 HOH HOH . Q 5 HOH D 23 523 312 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . I 4 141.736 229.921 292.59 1 91.62 ? OH2 1PE 401 C 1 HETATM 2 C C12 1PE . . . I 4 142.953 229.498 293.143 1 89.8 ? C12 1PE 401 C 1 HETATM 3 C C22 1PE . . . I 4 143.256 228.066 292.696 1 86.38 ? C22 1PE 401 C 1 HETATM 4 O OH3 1PE . . . I 4 142.516 227.166 293.483 1 113.79 ? OH3 1PE 401 C 1 HETATM 5 C C13 1PE . . . I 4 142.25 224.756 293.373 1 95.75 ? C13 1PE 401 C 1 HETATM 6 C C23 1PE . . . I 4 143.156 225.94 293.738 1 101.83 ? C23 1PE 401 C 1 HETATM 7 O OH4 1PE . . . I 4 141.418 224.472 294.461 1 100.6 ? OH4 1PE 401 C 1 HETATM 8 C C14 1PE . . . I 4 140.264 222.989 295.924 1 86.18 ? C14 1PE 401 C 1 HETATM 9 C C24 1PE . . . I 4 141.041 223.128 294.608 1 91.08 ? C24 1PE 401 C 1 HETATM 10 O OH5 1PE . . . I 4 139.219 223.925 295.903 1 94.34 ? OH5 1PE 401 C 1 HETATM 11 C C15 1PE . . . I 4 136.906 224.478 296.033 1 84.14 ? C15 1PE 401 C 1 HETATM 12 C C25 1PE . . . I 4 138.009 223.518 296.484 1 89.68 ? C25 1PE 401 C 1 HETATM 13 O OH6 1PE . . . I 4 135.709 224.208 296.707 1 84.58 ? OH6 1PE 401 C 1 HETATM 14 C C16 1PE . . . I 4 134.677 226.202 295.752 1 88.07 ? C16 1PE 401 C 1 HETATM 15 C C26 1PE . . . I 4 134.948 225.354 297.003 1 89.26 ? C26 1PE 401 C 1 HETATM 16 O OH7 1PE . . . I 4 134.058 227.416 296.105 1 70.45 ? OH7 1PE 401 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #