data_7S8W # _model_server_result.job_id w562FmhQXNUPnwaFFMnzwA _model_server_result.datetime_utc '2024-10-20 18:57:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":402}' # _entry.id 7S8W # _exptl.entry_id 7S8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 251.235 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-succinyl-L-phenylglycine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7S8W _cell.length_a 213.742 _cell.length_b 213.742 _cell.length_c 253.077 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_767 -x+8/3,-x+y+4/3,-z+7/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 427.484 246.808002 590.513 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 J N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 189 A ASP 189 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A OE2 GLU 214 A GLU 214 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc3 A OD2 ASP 239 A ASP 239 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc4 E O09 8JI . A 8JI 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc5 E O10 8JI . A 8JI 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc6 F MG MG . A MG 402 1_555 N O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc7 B OD2 ASP 189 B ASP 189 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc8 B OE2 GLU 214 B GLU 214 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc9 B OD2 ASP 239 B ASP 239 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc10 G O09 8JI . B 8JI 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc11 G O10 8JI . B 8JI 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc12 H MG MG . B MG 402 1_555 O O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc13 C OD2 ASP 189 C ASP 189 1_555 K MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc14 C OE2 GLU 214 C GLU 214 1_555 K MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc15 C OD2 ASP 239 C ASP 239 1_555 K MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc16 J O09 8JI . C 8JI 402 1_555 K MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc17 J O10 8JI . C 8JI 402 1_555 K MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc18 K MG MG . C MG 403 1_555 P O HOH . C HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc19 D OD2 ASP 189 D ASP 189 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc20 D OE2 GLU 214 D GLU 214 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc21 D OD2 ASP 239 D ASP 239 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc22 L O09 8JI . D 8JI 401 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc23 L O10 8JI . D 8JI 401 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc24 M MG MG . D MG 402 1_555 Q O HOH . D HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? # _chem_comp.formula 'C12 H13 N O5' _chem_comp.formula_weight 251.235 _chem_comp.id 8JI _chem_comp.mon_nstd_flag . _chem_comp.name N-succinyl-L-phenylglycine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C06 8JI doub 38 n y C01 C02 8JI sing 39 n y C06 C05 8JI sing 40 n y C02 C03 8JI doub 41 n y C05 C04 8JI doub 42 n y C03 C04 8JI sing 43 n y C04 C07 8JI sing 44 n n O09 C08 8JI doub 45 n n C07 C08 8JI sing 46 n n C07 N11 8JI sing 47 n n C08 O10 8JI sing 48 n n O13 C12 8JI doub 49 n n N11 C12 8JI sing 50 n n C15 C16 8JI sing 51 n n C15 C14 8JI sing 52 n n C12 C14 8JI sing 53 n n O17 C16 8JI doub 54 n n C16 O18 8JI sing 55 n n C15 H1 8JI sing 56 n n C15 H2 8JI sing 57 n n C01 H3 8JI sing 58 n n C02 H4 8JI sing 59 n n C03 H5 8JI sing 60 n n C05 H6 8JI sing 61 n n C06 H7 8JI sing 62 n n C07 H8 8JI sing 63 n n C14 H9 8JI sing 64 n n C14 H10 8JI sing 65 n n N11 H11 8JI sing 66 n n O10 H12 8JI sing 67 n n O18 H13 8JI sing 68 n n # _atom_sites.entry_id 7S8W _atom_sites.fract_transf_matrix[1][1] 0.004679 _atom_sites.fract_transf_matrix[1][2] 0.002701 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 8JI A 1 401 369 8JI LIG . F 3 MG A 1 402 1 MG MG . G 2 8JI B 1 401 369 8JI LIG . H 3 MG B 1 402 2 MG MG . I 4 1PE C 1 401 1003 1PE 1PE . J 2 8JI C 1 402 369 8JI LIG . K 3 MG C 1 403 4 MG MG . L 2 8JI D 1 401 369 8JI LIG . M 3 MG D 1 402 3 MG MG . N 5 HOH A 1 501 398 HOH HOH . N 5 HOH A 2 502 394 HOH HOH . N 5 HOH A 3 503 264 HOH HOH . N 5 HOH A 4 504 392 HOH HOH . N 5 HOH A 5 505 17 HOH HOH . N 5 HOH A 6 506 30 HOH HOH . N 5 HOH A 7 507 107 HOH HOH . N 5 HOH A 8 508 38 HOH HOH . N 5 HOH A 9 509 90 HOH HOH . N 5 HOH A 10 510 173 HOH HOH . N 5 HOH A 11 511 260 HOH HOH . N 5 HOH A 12 512 389 HOH HOH . N 5 HOH A 13 513 178 HOH HOH . N 5 HOH A 14 514 390 HOH HOH . N 5 HOH A 15 515 124 HOH HOH . N 5 HOH A 16 516 13 HOH HOH . N 5 HOH A 17 517 256 HOH HOH . N 5 HOH A 18 518 84 HOH HOH . N 5 HOH A 19 519 72 HOH HOH . N 5 HOH A 20 520 240 HOH HOH . N 5 HOH A 21 521 26 HOH HOH . N 5 HOH A 22 522 363 HOH HOH . N 5 HOH A 23 523 234 HOH HOH . N 5 HOH A 24 524 218 HOH HOH . N 5 HOH A 25 525 257 HOH HOH . N 5 HOH A 26 526 149 HOH HOH . N 5 HOH A 27 527 110 HOH HOH . N 5 HOH A 28 528 214 HOH HOH . N 5 HOH A 29 529 145 HOH HOH . N 5 HOH A 30 530 233 HOH HOH . N 5 HOH A 31 531 138 HOH HOH . N 5 HOH A 32 532 376 HOH HOH . N 5 HOH A 33 533 241 HOH HOH . N 5 HOH A 34 534 116 HOH HOH . N 5 HOH A 35 535 170 HOH HOH . N 5 HOH A 36 536 287 HOH HOH . N 5 HOH A 37 537 135 HOH HOH . N 5 HOH A 38 538 275 HOH HOH . N 5 HOH A 39 539 117 HOH HOH . N 5 HOH A 40 540 375 HOH HOH . N 5 HOH A 41 541 189 HOH HOH . N 5 HOH A 42 542 108 HOH HOH . O 5 HOH B 1 501 269 HOH HOH . O 5 HOH B 2 502 53 HOH HOH . O 5 HOH B 3 503 268 HOH HOH . O 5 HOH B 4 504 395 HOH HOH . O 5 HOH B 5 505 187 HOH HOH . O 5 HOH B 6 506 384 HOH HOH . O 5 HOH B 7 507 11 HOH HOH . O 5 HOH B 8 508 45 HOH HOH . O 5 HOH B 9 509 44 HOH HOH . O 5 HOH B 10 510 112 HOH HOH . O 5 HOH B 11 511 137 HOH HOH . O 5 HOH B 12 512 278 HOH HOH . O 5 HOH B 13 513 156 HOH HOH . O 5 HOH B 14 514 7 HOH HOH . O 5 HOH B 15 515 85 HOH HOH . O 5 HOH B 16 516 168 HOH HOH . O 5 HOH B 17 517 364 HOH HOH . O 5 HOH B 18 518 249 HOH HOH . O 5 HOH B 19 519 133 HOH HOH . O 5 HOH B 20 520 78 HOH HOH . O 5 HOH B 21 521 296 HOH HOH . O 5 HOH B 22 522 333 HOH HOH . O 5 HOH B 23 523 43 HOH HOH . O 5 HOH B 24 524 37 HOH HOH . O 5 HOH B 25 525 100 HOH HOH . O 5 HOH B 26 526 188 HOH HOH . O 5 HOH B 27 527 220 HOH HOH . O 5 HOH B 28 528 391 HOH HOH . O 5 HOH B 29 529 129 HOH HOH . O 5 HOH B 30 530 393 HOH HOH . O 5 HOH B 31 531 150 HOH HOH . O 5 HOH B 32 532 380 HOH HOH . O 5 HOH B 33 533 25 HOH HOH . O 5 HOH B 34 534 337 HOH HOH . O 5 HOH B 35 535 330 HOH HOH . P 5 HOH C 1 501 70 HOH HOH . P 5 HOH C 2 502 200 HOH HOH . P 5 HOH C 3 503 397 HOH HOH . P 5 HOH C 4 504 29 HOH HOH . P 5 HOH C 5 505 261 HOH HOH . P 5 HOH C 6 506 64 HOH HOH . P 5 HOH C 7 507 80 HOH HOH . P 5 HOH C 8 508 14 HOH HOH . P 5 HOH C 9 509 32 HOH HOH . P 5 HOH C 10 510 167 HOH HOH . P 5 HOH C 11 511 47 HOH HOH . P 5 HOH C 12 512 19 HOH HOH . P 5 HOH C 13 513 243 HOH HOH . P 5 HOH C 14 514 79 HOH HOH . P 5 HOH C 15 515 154 HOH HOH . P 5 HOH C 16 516 73 HOH HOH . P 5 HOH C 17 517 153 HOH HOH . P 5 HOH C 18 518 186 HOH HOH . P 5 HOH C 19 519 102 HOH HOH . P 5 HOH C 20 520 48 HOH HOH . P 5 HOH C 21 521 65 HOH HOH . P 5 HOH C 22 522 160 HOH HOH . P 5 HOH C 23 523 126 HOH HOH . P 5 HOH C 24 524 88 HOH HOH . P 5 HOH C 25 525 284 HOH HOH . P 5 HOH C 26 526 132 HOH HOH . P 5 HOH C 27 527 139 HOH HOH . P 5 HOH C 28 528 265 HOH HOH . P 5 HOH C 29 529 325 HOH HOH . P 5 HOH C 30 530 148 HOH HOH . P 5 HOH C 31 531 359 HOH HOH . Q 5 HOH D 1 501 396 HOH HOH . Q 5 HOH D 2 502 36 HOH HOH . Q 5 HOH D 3 503 304 HOH HOH . Q 5 HOH D 4 504 28 HOH HOH . Q 5 HOH D 5 505 297 HOH HOH . Q 5 HOH D 6 506 346 HOH HOH . Q 5 HOH D 7 507 20 HOH HOH . Q 5 HOH D 8 508 288 HOH HOH . Q 5 HOH D 9 509 142 HOH HOH . Q 5 HOH D 10 510 1 HOH HOH . Q 5 HOH D 11 511 172 HOH HOH . Q 5 HOH D 12 512 361 HOH HOH . Q 5 HOH D 13 513 219 HOH HOH . Q 5 HOH D 14 514 230 HOH HOH . Q 5 HOH D 15 515 165 HOH HOH . Q 5 HOH D 16 516 157 HOH HOH . Q 5 HOH D 17 517 204 HOH HOH . Q 5 HOH D 18 518 105 HOH HOH . Q 5 HOH D 19 519 381 HOH HOH . Q 5 HOH D 20 520 185 HOH HOH . Q 5 HOH D 21 521 179 HOH HOH . Q 5 HOH D 22 522 388 HOH HOH . Q 5 HOH D 23 523 312 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 8JI . . . J 2 133.901 230.118 326.502 1 60.17 ? C15 8JI 402 C 1 HETATM 2 C C01 8JI . . . J 2 130.601 225.36 323.922 1 84.01 ? C01 8JI 402 C 1 HETATM 3 C C02 8JI . . . J 2 131.663 224.544 323.577 1 77.55 ? C02 8JI 402 C 1 HETATM 4 C C03 8JI . . . J 2 132.905 225.101 323.337 1 77.66 ? C03 8JI 402 C 1 HETATM 5 C C04 8JI . . . J 2 133.087 226.469 323.431 1 78.13 ? C04 8JI 402 C 1 HETATM 6 C C05 8JI . . . J 2 132.025 227.279 323.786 1 82.55 ? C05 8JI 402 C 1 HETATM 7 C C06 8JI . . . J 2 130.781 226.726 324.028 1 90.98 ? C06 8JI 402 C 1 HETATM 8 C C07 8JI . . . J 2 134.481 227.061 323.185 1 76.52 ? C07 8JI 402 C 1 HETATM 9 C C08 8JI . . . J 2 134.732 227.431 321.72 1 70.95 ? C08 8JI 402 C 1 HETATM 10 C C12 8JI . . . J 2 134.253 229.509 324.08 1 73.04 ? C12 8JI 402 C 1 HETATM 11 C C14 8JI . . . J 2 134.628 230.469 325.206 1 72.77 ? C14 8JI 402 C 1 HETATM 12 C C16 8JI . . . J 2 134.513 230.761 327.746 1 72.49 ? C16 8JI 402 C 1 HETATM 13 N N11 8JI . . . J 2 134.737 228.14 324.147 1 78.61 ? N11 8JI 402 C 1 HETATM 14 O O09 8JI . . . J 2 133.884 227.097 320.849 1 77.29 ? O09 8JI 402 C 1 HETATM 15 O O10 8JI . . . J 2 135.794 228.039 321.395 1 61.86 -1 O10 8JI 402 C 1 HETATM 16 O O13 8JI . . . J 2 133.583 229.877 323.183 1 66.94 ? O13 8JI 402 C 1 HETATM 17 O O17 8JI . . . J 2 134.672 232.014 327.803 1 76.66 ? O17 8JI 402 C 1 HETATM 18 O O18 8JI . . . J 2 134.846 230.038 328.729 1 76.26 -1 O18 8JI 402 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 676 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 18 #