data_7S9I # _model_server_result.job_id ruDKS7GeLPedX56a41IUCg _model_server_result.datetime_utc '2024-11-14 06:55:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7S9I # _exptl.entry_id 7S9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.901 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-{2-amino-4-chloro-7-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-methylpent-4-yn-2 -ol' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S9I _cell.length_a 68.315 _cell.length_b 91.151 _cell.length_c 99.586 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H24 Cl N5 O2' _chem_comp.formula_weight 413.901 _chem_comp.id 7PP _chem_comp.mon_nstd_flag . _chem_comp.name '5-{2-amino-4-chloro-7-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-methylpent-4-yn-2 -ol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms EC44 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CL 7PP sing 1 n n N5 C1 7PP sing 2 n y C2 C1 7PP doub 3 n y C21 N5 7PP doub 4 n y N4 C21 7PP sing 5 n n N3 C21 7PP sing 6 n y N4 HN4 7PP sing 7 n n N4 HN4A 7PP sing 8 n n N3 C20 7PP doub 9 n y N1 C20 7PP sing 10 n y C20 C2 7PP sing 11 n y C2 C3 7PP sing 12 n y C11 N1 7PP sing 13 n n N1 C10 7PP sing 14 n y C11 C12 7PP sing 15 n n C11 H11 7PP sing 16 n n C11 H11A 7PP sing 17 n n N2 C12 7PP sing 18 n y C12 C18 7PP doub 19 n y C18 C19 7PP sing 20 n n C18 C16 7PP sing 21 n y C19 H19 7PP sing 22 n n C19 H19A 7PP sing 23 n n C19 H19B 7PP sing 24 n n C14 C16 7PP doub 25 n y C16 O2 7PP sing 26 n n O2 C17 7PP sing 27 n n C17 H17 7PP sing 28 n n C17 H17A 7PP sing 29 n n C17 H17B 7PP sing 30 n n C13 C14 7PP sing 31 n y C14 C15 7PP sing 32 n n C15 H15 7PP sing 33 n n C15 H15A 7PP sing 34 n n C15 H15B 7PP sing 35 n n N2 C13 7PP doub 36 n y C13 H13 7PP sing 37 n n C10 C3 7PP doub 38 n y C10 H10 7PP sing 39 n n C3 C4 7PP sing 40 n n C4 C5 7PP trip 41 n n C5 C6 7PP sing 42 n n C6 C7 7PP sing 43 n n C6 H6 7PP sing 44 n n C6 H6A 7PP sing 45 n n C8 C7 7PP sing 46 n n C7 O1 7PP sing 47 n n C7 C9 7PP sing 48 n n C9 H9 7PP sing 49 n n C9 H9A 7PP sing 50 n n C9 H9B 7PP sing 51 n n C8 H8 7PP sing 52 n n C8 H8A 7PP sing 53 n n C8 H8B 7PP sing 54 n n O1 HO1 7PP sing 55 n n # _atom_sites.entry_id 7S9I _atom_sites.fract_transf_matrix[1][1] 0.014638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010042 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7PP A 1 301 301 7PP 7PP . C 3 HOH A 1 401 75 HOH HOH . C 3 HOH A 2 402 58 HOH HOH . C 3 HOH A 3 403 33 HOH HOH . C 3 HOH A 4 404 25 HOH HOH . C 3 HOH A 5 405 10 HOH HOH . C 3 HOH A 6 406 94 HOH HOH . C 3 HOH A 7 407 29 HOH HOH . C 3 HOH A 8 408 91 HOH HOH . C 3 HOH A 9 409 17 HOH HOH . C 3 HOH A 10 410 79 HOH HOH . C 3 HOH A 11 411 44 HOH HOH . C 3 HOH A 12 412 40 HOH HOH . C 3 HOH A 13 413 1 HOH HOH . C 3 HOH A 14 414 81 HOH HOH . C 3 HOH A 15 415 16 HOH HOH . C 3 HOH A 16 416 51 HOH HOH . C 3 HOH A 17 417 57 HOH HOH . C 3 HOH A 18 418 20 HOH HOH . C 3 HOH A 19 419 14 HOH HOH . C 3 HOH A 20 420 32 HOH HOH . C 3 HOH A 21 421 50 HOH HOH . C 3 HOH A 22 422 9 HOH HOH . C 3 HOH A 23 423 95 HOH HOH . C 3 HOH A 24 424 23 HOH HOH . C 3 HOH A 25 425 61 HOH HOH . C 3 HOH A 26 426 67 HOH HOH . C 3 HOH A 27 427 18 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 48 HOH HOH . C 3 HOH A 30 430 70 HOH HOH . C 3 HOH A 31 431 15 HOH HOH . C 3 HOH A 32 432 3 HOH HOH . C 3 HOH A 33 433 62 HOH HOH . C 3 HOH A 34 434 35 HOH HOH . C 3 HOH A 35 435 78 HOH HOH . C 3 HOH A 36 436 59 HOH HOH . C 3 HOH A 37 437 49 HOH HOH . C 3 HOH A 38 438 54 HOH HOH . C 3 HOH A 39 439 4 HOH HOH . C 3 HOH A 40 440 46 HOH HOH . C 3 HOH A 41 441 19 HOH HOH . C 3 HOH A 42 442 56 HOH HOH . C 3 HOH A 43 443 42 HOH HOH . C 3 HOH A 44 444 37 HOH HOH . C 3 HOH A 45 445 13 HOH HOH . C 3 HOH A 46 446 73 HOH HOH . C 3 HOH A 47 447 22 HOH HOH . C 3 HOH A 48 448 21 HOH HOH . C 3 HOH A 49 449 84 HOH HOH . C 3 HOH A 50 450 47 HOH HOH . C 3 HOH A 51 451 7 HOH HOH . C 3 HOH A 52 452 86 HOH HOH . C 3 HOH A 53 453 2 HOH HOH . C 3 HOH A 54 454 11 HOH HOH . C 3 HOH A 55 455 53 HOH HOH . C 3 HOH A 56 456 71 HOH HOH . C 3 HOH A 57 457 65 HOH HOH . C 3 HOH A 58 458 27 HOH HOH . C 3 HOH A 59 459 26 HOH HOH . C 3 HOH A 60 460 31 HOH HOH . C 3 HOH A 61 461 66 HOH HOH . C 3 HOH A 62 462 90 HOH HOH . C 3 HOH A 63 463 88 HOH HOH . C 3 HOH A 64 464 80 HOH HOH . C 3 HOH A 65 465 8 HOH HOH . C 3 HOH A 66 466 87 HOH HOH . C 3 HOH A 67 467 89 HOH HOH . C 3 HOH A 68 468 82 HOH HOH . C 3 HOH A 69 469 36 HOH HOH . C 3 HOH A 70 470 72 HOH HOH . C 3 HOH A 71 471 6 HOH HOH . C 3 HOH A 72 472 43 HOH HOH . C 3 HOH A 73 473 55 HOH HOH . C 3 HOH A 74 474 39 HOH HOH . C 3 HOH A 75 475 5 HOH HOH . C 3 HOH A 76 476 52 HOH HOH . C 3 HOH A 77 477 83 HOH HOH . C 3 HOH A 78 478 12 HOH HOH . C 3 HOH A 79 479 30 HOH HOH . C 3 HOH A 80 480 74 HOH HOH . C 3 HOH A 81 481 92 HOH HOH . C 3 HOH A 82 482 85 HOH HOH . C 3 HOH A 83 483 77 HOH HOH . C 3 HOH A 84 484 41 HOH HOH . C 3 HOH A 85 485 24 HOH HOH . C 3 HOH A 86 486 34 HOH HOH . C 3 HOH A 87 487 69 HOH HOH . C 3 HOH A 88 488 63 HOH HOH . C 3 HOH A 89 489 38 HOH HOH . C 3 HOH A 90 490 93 HOH HOH . C 3 HOH A 91 491 76 HOH HOH . C 3 HOH A 92 492 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL 7PP . . . B 2 35.105 9.332 -27.839 1 32.73 ? CL 7PP 301 A 1 HETATM 2 C C1 7PP . . . B 2 34.545 10.034 -26.322 1 29.5 ? C1 7PP 301 A 1 HETATM 3 N N5 7PP . . . B 2 35.625 10.665 -25.776 1 29.43 ? N5 7PP 301 A 1 HETATM 4 C C21 7PP . . . B 2 35.401 11.348 -24.589 1 30.6 ? C21 7PP 301 A 1 HETATM 5 N N4 7PP . . . B 2 36.494 11.987 -23.946 1 28.88 ? N4 7PP 301 A 1 HETATM 6 N N3 7PP . . . B 2 34.195 11.389 -23.996 1 30.11 ? N3 7PP 301 A 1 HETATM 7 C C20 7PP . . . B 2 33.189 10.757 -24.582 1 31.61 ? C20 7PP 301 A 1 HETATM 8 C C2 7PP . . . B 2 33.378 10.09 -25.719 1 31.9 ? C2 7PP 301 A 1 HETATM 9 N N1 7PP . . . B 2 31.892 10.632 -24.243 1 30.78 ? N1 7PP 301 A 1 HETATM 10 C C11 7PP . . . B 2 31.204 11.172 -23.094 1 31.36 ? C11 7PP 301 A 1 HETATM 11 C C12 7PP . . . B 2 30.155 12.158 -23.577 1 31.38 ? C12 7PP 301 A 1 HETATM 12 C C18 7PP . . . B 2 30.376 13.438 -24.094 1 31.76 ? C18 7PP 301 A 1 HETATM 13 C C19 7PP . . . B 2 31.8 13.995 -24.229 1 31.5 ? C19 7PP 301 A 1 HETATM 14 C C16 7PP . . . B 2 29.301 14.23 -24.496 1 33.18 ? C16 7PP 301 A 1 HETATM 15 O O2 7PP . . . B 2 29.453 15.527 -25.003 1 36.15 ? O2 7PP 301 A 1 HETATM 16 C C17 7PP . . . B 2 29.335 15.652 -26.405 1 35.57 ? C17 7PP 301 A 1 HETATM 17 C C14 7PP . . . B 2 28.054 13.733 -24.367 1 33.04 ? C14 7PP 301 A 1 HETATM 18 C C15 7PP . . . B 2 26.839 14.536 -24.78 1 37.1 ? C15 7PP 301 A 1 HETATM 19 C C13 7PP . . . B 2 27.847 12.459 -23.85 1 34.37 ? C13 7PP 301 A 1 HETATM 20 N N2 7PP . . . B 2 28.908 11.709 -23.475 1 30.45 ? N2 7PP 301 A 1 HETATM 21 C C10 7PP . . . B 2 31.26 9.862 -25.173 1 33.21 ? C10 7PP 301 A 1 HETATM 22 C C3 7PP . . . B 2 32.202 9.529 -26.121 1 35.62 ? C3 7PP 301 A 1 HETATM 23 C C4 7PP . . . B 2 31.865 8.686 -27.349 1 37.19 ? C4 7PP 301 A 1 HETATM 24 C C5 7PP . . . B 2 31.588 8.015 -28.299 1 40.28 ? C5 7PP 301 A 1 HETATM 25 C C6 7PP . . . B 2 31.228 7.114 -29.498 1 44.31 ? C6 7PP 301 A 1 HETATM 26 C C7 7PP . . . B 2 32.031 5.798 -29.396 1 55.13 ? C7 7PP 301 A 1 HETATM 27 C C9 7PP . . . B 2 33.504 6.092 -29.621 1 55.32 ? C9 7PP 301 A 1 HETATM 28 C C8 7PP . . . B 2 31.562 4.768 -30.417 1 53.71 ? C8 7PP 301 A 1 HETATM 29 O O1 7PP . . . B 2 31.867 5.26 -28.119 1 53.2 ? O1 7PP 301 A 1 HETATM 30 H HN4 7PP . . . B 2 36.344 12.618 -23.375 1 34.68 ? HN4 7PP 301 A 1 HETATM 31 H HN4A 7PP . . . B 2 37.303 11.733 -24.092 1 34.68 ? HN4A 7PP 301 A 1 HETATM 32 H H11 7PP . . . B 2 31.838 11.626 -22.517 1 37.65 ? H11 7PP 301 A 1 HETATM 33 H H11A 7PP . . . B 2 30.776 10.454 -22.603 1 37.65 ? H11A 7PP 301 A 1 HETATM 34 H H19 7PP . . . B 2 32.437 13.332 -23.92 1 37.83 ? H19 7PP 301 A 1 HETATM 35 H H19A 7PP . . . B 2 31.884 14.799 -23.693 1 37.83 ? H19A 7PP 301 A 1 HETATM 36 H H19B 7PP . . . B 2 31.977 14.207 -25.159 1 37.83 ? H19B 7PP 301 A 1 HETATM 37 H H17 7PP . . . B 2 29.196 14.776 -26.797 1 42.7 ? H17 7PP 301 A 1 HETATM 38 H H17A 7PP . . . B 2 30.148 16.042 -26.764 1 42.7 ? H17A 7PP 301 A 1 HETATM 39 H H17B 7PP . . . B 2 28.582 16.225 -26.617 1 42.7 ? H17B 7PP 301 A 1 HETATM 40 H H15 7PP . . . B 2 26.059 14.209 -24.305 1 44.54 ? H15 7PP 301 A 1 HETATM 41 H H15A 7PP . . . B 2 26.699 14.443 -25.735 1 44.54 ? H15A 7PP 301 A 1 HETATM 42 H H15B 7PP . . . B 2 26.981 15.471 -24.564 1 44.54 ? H15B 7PP 301 A 1 HETATM 43 H H13 7PP . . . B 2 26.984 12.125 -23.762 1 41.26 ? H13 7PP 301 A 1 HETATM 44 H H10 7PP . . . B 2 30.365 9.611 -25.169 1 39.87 ? H10 7PP 301 A 1 HETATM 45 H H6 7PP . . . B 2 31.451 7.569 -30.325 1 53.19 ? H6 7PP 301 A 1 HETATM 46 H H6A 7PP . . . B 2 30.278 6.917 -29.483 1 53.19 ? H6A 7PP 301 A 1 HETATM 47 H H9 7PP . . . B 2 34.037 5.557 -29.012 1 66.41 ? H9 7PP 301 A 1 HETATM 48 H H9A 7PP . . . B 2 33.674 7.033 -29.459 1 66.41 ? H9A 7PP 301 A 1 HETATM 49 H H9B 7PP . . . B 2 33.741 5.873 -30.536 1 66.41 ? H9B 7PP 301 A 1 HETATM 50 H H8 7PP . . . B 2 32.206 4.045 -30.467 1 64.48 ? H8 7PP 301 A 1 HETATM 51 H H8A 7PP . . . B 2 31.48 5.189 -31.287 1 64.48 ? H8A 7PP 301 A 1 HETATM 52 H H8B 7PP . . . B 2 30.7 4.414 -30.147 1 64.48 ? H8B 7PP 301 A 1 HETATM 53 H HO1 7PP . . . B 2 32.495 5.536 -27.608 1 63.86 ? HO1 7PP 301 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #