data_7SAS # _model_server_result.job_id qF3DlFuF0-VB1zuVIHq_Sw _model_server_result.datetime_utc '2024-12-21 02:33:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":301}' # _entry.id 7SAS # _exptl.entry_id 7SAS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 40 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SAS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N ? 2 SA N N ? 2 TA N N ? 2 UA N N ? 2 VA N N ? 2 WA N N ? 2 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 214 A CYS 214 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 214 B CYS 214 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 C SG CYS 214 C CYS 214 1_555 C SG CYS 253 C CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 214 D CYS 214 1_555 D SG CYS 253 D CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 E SG CYS 214 E CYS 214 1_555 E SG CYS 253 E CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 F SG CYS 214 F CYS 214 1_555 F SG CYS 253 F CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 G SG CYS 214 G CYS 214 1_555 G SG CYS 253 G CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 H SG CYS 214 H CYS 214 1_555 H SG CYS 253 H CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 I SG CYS 214 I CYS 214 1_555 I SG CYS 253 I CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 J SG CYS 214 J CYS 214 1_555 J SG CYS 253 J CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 145 A ASN 145 1_555 N C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 151 A ASN 151 1_555 K C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 164 A ASN 164 1_555 L C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 A ND2 ASN 183 A ASN 183 1_555 M C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 B ND2 ASN 145 B ASN 145 1_555 R C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 B ND2 ASN 151 B ASN 151 1_555 O C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B ND2 ASN 164 B ASN 164 1_555 P C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 B ND2 ASN 183 B ASN 183 1_555 Q C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 C ND2 ASN 145 C ASN 145 1_555 V C1 NAG . C NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 C ND2 ASN 151 C ASN 151 1_555 S C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 C ND2 ASN 164 C ASN 164 1_555 T C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 C ND2 ASN 183 C ASN 183 1_555 U C1 NAG . C NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale13 D ND2 ASN 145 D ASN 145 1_555 Z C1 NAG . D NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale14 D ND2 ASN 151 D ASN 151 1_555 W C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 D ND2 ASN 164 D ASN 164 1_555 X C1 NAG . D NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale16 D ND2 ASN 183 D ASN 183 1_555 Y C1 NAG . D NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale17 E ND2 ASN 145 E ASN 145 1_555 DA C1 NAG . E NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale18 E ND2 ASN 151 E ASN 151 1_555 AA C1 NAG . E NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale19 E ND2 ASN 164 E ASN 164 1_555 BA C1 NAG . E NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale20 E ND2 ASN 183 E ASN 183 1_555 CA C1 NAG . E NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale21 F ND2 ASN 145 F ASN 145 1_555 HA C1 NAG . F NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale22 F ND2 ASN 151 F ASN 151 1_555 EA C1 NAG . F NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale23 F ND2 ASN 164 F ASN 164 1_555 FA C1 NAG . F NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale24 F ND2 ASN 183 F ASN 183 1_555 GA C1 NAG . F NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale25 G ND2 ASN 145 G ASN 145 1_555 LA C1 NAG . G NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale26 G ND2 ASN 151 G ASN 151 1_555 IA C1 NAG . G NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale27 G ND2 ASN 164 G ASN 164 1_555 JA C1 NAG . G NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale28 G ND2 ASN 183 G ASN 183 1_555 KA C1 NAG . G NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale29 H ND2 ASN 145 H ASN 145 1_555 PA C1 NAG . H NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale30 H ND2 ASN 151 H ASN 151 1_555 MA C1 NAG . H NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale31 H ND2 ASN 164 H ASN 164 1_555 NA C1 NAG . H NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale32 H ND2 ASN 183 H ASN 183 1_555 OA C1 NAG . H NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale33 I ND2 ASN 145 I ASN 145 1_555 TA C1 NAG . I NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale34 I ND2 ASN 151 I ASN 151 1_555 QA C1 NAG . I NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale35 I ND2 ASN 164 I ASN 164 1_555 RA C1 NAG . I NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale36 I ND2 ASN 183 I ASN 183 1_555 SA C1 NAG . I NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale37 J ND2 ASN 145 J ASN 145 1_555 XA C1 NAG . J NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale38 J ND2 ASN 151 J ASN 151 1_555 UA C1 NAG . J NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale39 J ND2 ASN 164 J ASN 164 1_555 VA C1 NAG . J NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale40 J ND2 ASN 183 J ASN 183 1_555 WA C1 NAG . J NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7SAS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 NAG A 1 301 256 NAG NAG . L 2 NAG A 1 302 257 NAG NAG . M 2 NAG A 1 303 258 NAG NAG . N 2 NAG A 1 304 259 NAG NAG . O 2 NAG B 1 301 256 NAG NAG . P 2 NAG B 1 302 257 NAG NAG . Q 2 NAG B 1 303 258 NAG NAG . R 2 NAG B 1 304 259 NAG NAG . S 2 NAG C 1 301 256 NAG NAG . T 2 NAG C 1 302 257 NAG NAG . U 2 NAG C 1 303 258 NAG NAG . V 2 NAG C 1 304 259 NAG NAG . W 2 NAG D 1 301 256 NAG NAG . X 2 NAG D 1 302 257 NAG NAG . Y 2 NAG D 1 303 258 NAG NAG . Z 2 NAG D 1 304 259 NAG NAG . AA 2 NAG E 1 301 256 NAG NAG . BA 2 NAG E 1 302 257 NAG NAG . CA 2 NAG E 1 303 258 NAG NAG . DA 2 NAG E 1 304 259 NAG NAG . EA 2 NAG F 1 301 256 NAG NAG . FA 2 NAG F 1 302 257 NAG NAG . GA 2 NAG F 1 303 258 NAG NAG . HA 2 NAG F 1 304 259 NAG NAG . IA 2 NAG G 1 301 256 NAG NAG . JA 2 NAG G 1 302 257 NAG NAG . KA 2 NAG G 1 303 258 NAG NAG . LA 2 NAG G 1 304 259 NAG NAG . MA 2 NAG H 1 301 256 NAG NAG . NA 2 NAG H 1 302 257 NAG NAG . OA 2 NAG H 1 303 258 NAG NAG . PA 2 NAG H 1 304 259 NAG NAG . QA 2 NAG I 1 301 256 NAG NAG . RA 2 NAG I 1 302 257 NAG NAG . SA 2 NAG I 1 303 258 NAG NAG . TA 2 NAG I 1 304 259 NAG NAG . UA 2 NAG J 1 301 256 NAG NAG . VA 2 NAG J 1 302 257 NAG NAG . WA 2 NAG J 1 303 258 NAG NAG . XA 2 NAG J 1 304 259 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . W 2 -55.457 64.971 5.882 1 65 ? C1 NAG 301 D 1 HETATM 2 C C2 NAG . . . W 2 -56.753 65.475 6.519 1 65 ? C2 NAG 301 D 1 HETATM 3 C C3 NAG . . . W 2 -56.954 66.955 6.208 1 65 ? C3 NAG 301 D 1 HETATM 4 C C4 NAG . . . W 2 -55.724 67.755 6.615 1 65 ? C4 NAG 301 D 1 HETATM 5 C C5 NAG . . . W 2 -54.473 67.158 5.976 1 65 ? C5 NAG 301 D 1 HETATM 6 C C6 NAG . . . W 2 -53.199 67.833 6.426 1 65 ? C6 NAG 301 D 1 HETATM 7 C C7 NAG . . . W 2 -58.317 63.588 6.684 1 65 ? C7 NAG 301 D 1 HETATM 8 C C8 NAG . . . W 2 -59.51 62.913 6.081 1 65 ? C8 NAG 301 D 1 HETATM 9 N N2 NAG . . . W 2 -57.896 64.698 6.067 1 65 ? N2 NAG 301 D 1 HETATM 10 O O3 NAG . . . W 2 -58.098 67.434 6.905 1 65 ? O3 NAG 301 D 1 HETATM 11 O O4 NAG . . . W 2 -55.864 69.109 6.202 1 65 ? O4 NAG 301 D 1 HETATM 12 O O5 NAG . . . W 2 -54.356 65.771 6.33 1 65 ? O5 NAG 301 D 1 HETATM 13 O O6 NAG . . . W 2 -53.306 69.247 6.342 1 65 ? O6 NAG 301 D 1 HETATM 14 O O7 NAG . . . W 2 -57.757 63.148 7.683 1 65 ? O7 NAG 301 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #