data_7SBU # _model_server_result.job_id 8RN08CjREn5BpC8gL7hD6A _model_server_result.datetime_utc '2024-11-21 10:27:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 7SBU # _exptl.entry_id 7SBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SBU _cell.length_a 54.539 _cell.length_b 103.177 _cell.length_c 122.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 336 1_555 A SG CYS 29 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 47 A CYS 379 1_555 A SG CYS 100 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 59 A CYS 391 1_555 A SG CYS 193 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 148 A CYS 480 1_555 A SG CYS 156 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 152 H CYS 140 1_555 B SG CYS 208 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 C SG CYS 130 L CYS 134 1_555 C SG CYS 190 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 11 A ASN 343 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7SBU _atom_sites.fract_transf_matrix[1][1] 0.018336 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 529 NAG NAG . E 5 GOL H 1 301 301 GOL GOL . F 5 GOL L 1 301 301 GOL GOL . G 6 HOH A 1 701 84 HOH HOH . G 6 HOH A 2 702 18 HOH HOH . G 6 HOH A 3 703 25 HOH HOH . G 6 HOH A 4 704 102 HOH HOH . G 6 HOH A 5 705 98 HOH HOH . G 6 HOH A 6 706 57 HOH HOH . G 6 HOH A 7 707 30 HOH HOH . G 6 HOH A 8 708 124 HOH HOH . G 6 HOH A 9 709 126 HOH HOH . G 6 HOH A 10 710 24 HOH HOH . G 6 HOH A 11 711 118 HOH HOH . G 6 HOH A 12 712 130 HOH HOH . G 6 HOH A 13 713 69 HOH HOH . G 6 HOH A 14 714 1 HOH HOH . G 6 HOH A 15 715 71 HOH HOH . G 6 HOH A 16 716 59 HOH HOH . G 6 HOH A 17 717 74 HOH HOH . G 6 HOH A 18 718 105 HOH HOH . G 6 HOH A 19 719 32 HOH HOH . G 6 HOH A 20 720 61 HOH HOH . G 6 HOH A 21 721 29 HOH HOH . G 6 HOH A 22 722 14 HOH HOH . G 6 HOH A 23 723 9 HOH HOH . G 6 HOH A 24 724 43 HOH HOH . G 6 HOH A 25 725 110 HOH HOH . G 6 HOH A 26 726 87 HOH HOH . G 6 HOH A 27 727 28 HOH HOH . G 6 HOH A 28 728 91 HOH HOH . G 6 HOH A 29 729 67 HOH HOH . G 6 HOH A 30 730 78 HOH HOH . G 6 HOH A 31 731 4 HOH HOH . G 6 HOH A 32 732 2 HOH HOH . G 6 HOH A 33 733 5 HOH HOH . G 6 HOH A 34 734 66 HOH HOH . G 6 HOH A 35 735 36 HOH HOH . G 6 HOH A 36 736 70 HOH HOH . G 6 HOH A 37 737 55 HOH HOH . G 6 HOH A 38 738 21 HOH HOH . G 6 HOH A 39 739 45 HOH HOH . G 6 HOH A 40 740 97 HOH HOH . G 6 HOH A 41 741 136 HOH HOH . G 6 HOH A 42 742 89 HOH HOH . H 6 HOH H 1 401 49 HOH HOH . H 6 HOH H 2 402 77 HOH HOH . H 6 HOH H 3 403 51 HOH HOH . H 6 HOH H 4 404 38 HOH HOH . H 6 HOH H 5 405 85 HOH HOH . H 6 HOH H 6 406 76 HOH HOH . H 6 HOH H 7 407 75 HOH HOH . H 6 HOH H 8 408 103 HOH HOH . H 6 HOH H 9 409 93 HOH HOH . H 6 HOH H 10 410 60 HOH HOH . H 6 HOH H 11 411 39 HOH HOH . H 6 HOH H 12 412 109 HOH HOH . H 6 HOH H 13 413 114 HOH HOH . H 6 HOH H 14 414 82 HOH HOH . H 6 HOH H 15 415 8 HOH HOH . H 6 HOH H 16 416 128 HOH HOH . H 6 HOH H 17 417 100 HOH HOH . H 6 HOH H 18 418 64 HOH HOH . H 6 HOH H 19 419 22 HOH HOH . H 6 HOH H 20 420 123 HOH HOH . H 6 HOH H 21 421 122 HOH HOH . H 6 HOH H 22 422 106 HOH HOH . H 6 HOH H 23 423 26 HOH HOH . H 6 HOH H 24 424 113 HOH HOH . H 6 HOH H 25 425 19 HOH HOH . H 6 HOH H 26 426 73 HOH HOH . H 6 HOH H 27 427 96 HOH HOH . H 6 HOH H 28 428 46 HOH HOH . H 6 HOH H 29 429 81 HOH HOH . H 6 HOH H 30 430 116 HOH HOH . H 6 HOH H 31 431 111 HOH HOH . H 6 HOH H 32 432 17 HOH HOH . H 6 HOH H 33 433 58 HOH HOH . H 6 HOH H 34 434 42 HOH HOH . H 6 HOH H 35 435 129 HOH HOH . H 6 HOH H 36 436 65 HOH HOH . H 6 HOH H 37 437 68 HOH HOH . H 6 HOH H 38 438 112 HOH HOH . H 6 HOH H 39 439 48 HOH HOH . H 6 HOH H 40 440 107 HOH HOH . H 6 HOH H 41 441 79 HOH HOH . H 6 HOH H 42 442 34 HOH HOH . H 6 HOH H 43 443 16 HOH HOH . H 6 HOH H 44 444 115 HOH HOH . H 6 HOH H 45 445 12 HOH HOH . H 6 HOH H 46 446 11 HOH HOH . H 6 HOH H 47 447 31 HOH HOH . H 6 HOH H 48 448 56 HOH HOH . H 6 HOH H 49 449 131 HOH HOH . H 6 HOH H 50 450 88 HOH HOH . H 6 HOH H 51 451 134 HOH HOH . H 6 HOH H 52 452 90 HOH HOH . H 6 HOH H 53 453 138 HOH HOH . H 6 HOH H 54 454 133 HOH HOH . H 6 HOH H 55 455 99 HOH HOH . H 6 HOH H 56 456 139 HOH HOH . I 6 HOH L 1 401 83 HOH HOH . I 6 HOH L 2 402 47 HOH HOH . I 6 HOH L 3 403 44 HOH HOH . I 6 HOH L 4 404 127 HOH HOH . I 6 HOH L 5 405 92 HOH HOH . I 6 HOH L 6 406 120 HOH HOH . I 6 HOH L 7 407 41 HOH HOH . I 6 HOH L 8 408 117 HOH HOH . I 6 HOH L 9 409 27 HOH HOH . I 6 HOH L 10 410 94 HOH HOH . I 6 HOH L 11 411 6 HOH HOH . I 6 HOH L 12 412 104 HOH HOH . I 6 HOH L 13 413 52 HOH HOH . I 6 HOH L 14 414 50 HOH HOH . I 6 HOH L 15 415 63 HOH HOH . I 6 HOH L 16 416 95 HOH HOH . I 6 HOH L 17 417 15 HOH HOH . I 6 HOH L 18 418 37 HOH HOH . I 6 HOH L 19 419 3 HOH HOH . I 6 HOH L 20 420 72 HOH HOH . I 6 HOH L 21 421 35 HOH HOH . I 6 HOH L 22 422 40 HOH HOH . I 6 HOH L 23 423 53 HOH HOH . I 6 HOH L 24 424 62 HOH HOH . I 6 HOH L 25 425 101 HOH HOH . I 6 HOH L 26 426 108 HOH HOH . I 6 HOH L 27 427 121 HOH HOH . I 6 HOH L 28 428 86 HOH HOH . I 6 HOH L 29 429 33 HOH HOH . I 6 HOH L 30 430 20 HOH HOH . I 6 HOH L 31 431 23 HOH HOH . I 6 HOH L 32 432 7 HOH HOH . I 6 HOH L 33 433 10 HOH HOH . I 6 HOH L 34 434 119 HOH HOH . I 6 HOH L 35 435 13 HOH HOH . I 6 HOH L 36 436 140 HOH HOH . I 6 HOH L 37 437 125 HOH HOH . I 6 HOH L 38 438 54 HOH HOH . I 6 HOH L 39 439 135 HOH HOH . I 6 HOH L 40 440 132 HOH HOH . I 6 HOH L 41 441 80 HOH HOH . I 6 HOH L 42 442 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 19.247 50.212 74.747 1 44.66 ? C1 GOL 301 L 1 HETATM 2 O O1 GOL . . . F 5 18.746 50.256 76.048 1 37.91 ? O1 GOL 301 L 1 HETATM 3 C C2 GOL . . . F 5 18.415 51.208 73.907 1 42.27 ? C2 GOL 301 L 1 HETATM 4 O O2 GOL . . . F 5 19.18 52.274 73.46 1 48.84 ? O2 GOL 301 L 1 HETATM 5 C C3 GOL . . . F 5 17.846 50.369 72.741 1 37.54 ? C3 GOL 301 L 1 HETATM 6 O O3 GOL . . . F 5 17.022 51.216 72.003 1 38.54 ? O3 GOL 301 L 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #