data_7SCO # _model_server_result.job_id qdce5u30AsdeP8O8FJiP6A _model_server_result.datetime_utc '2024-10-20 19:09:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":403}' # _entry.id 7SCO # _exptl.entry_id 7SCO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 Z N N ? 6 AA N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n M NAG 1 M 1 NAG A 330 NAG 5 n M NAG 2 M 2 NAG A 333 NAG 5 n N NAG 1 N 1 NAG C 330 NAG 5 n N NAG 2 N 2 NAG C 333 NAG 5 n O NAG 1 O 1 NAG G 330 NAG 5 n O NAG 2 O 2 NAG G 333 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 8 1_555 B SG CYS 141 B CYS 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 42 A CYS 46 1_555 A SG CYS 274 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 55 A CYS 59 1_555 A SG CYS 67 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 90 A CYS 94 1_555 A SG CYS 135 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 278 A CYS 282 1_555 A SG CYS 302 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 B SG CYS 148 B CYS 474 1_555 B SG CYS 152 B CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 22 H CYS 529 1_555 C SG CYS 96 H CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf8 D SG CYS 23 L CYS 644 1_555 D SG CYS 89 L CYS 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 E SG CYS 4 C CYS 8 1_555 F SG CYS 141 D CYS 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 E SG CYS 42 C CYS 46 1_555 E SG CYS 274 C CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 E SG CYS 55 C CYS 59 1_555 E SG CYS 67 C CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf12 E SG CYS 90 C CYS 94 1_555 E SG CYS 135 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 E SG CYS 278 C CYS 282 1_555 E SG CYS 302 C CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf14 F SG CYS 148 D CYS 474 1_555 F SG CYS 152 D CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 G SG CYS 22 E CYS 529 1_555 G SG CYS 96 E CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf16 H SG CYS 23 F CYS 644 1_555 H SG CYS 89 F CYS 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf17 I SG CYS 4 G CYS 8 1_555 J SG CYS 141 I CYS 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 I SG CYS 42 G CYS 46 1_555 I SG CYS 274 G CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 I SG CYS 55 G CYS 59 1_555 I SG CYS 67 G CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf20 I SG CYS 90 G CYS 94 1_555 I SG CYS 135 G CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf21 I SG CYS 278 G CYS 282 1_555 I SG CYS 302 G CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf22 J SG CYS 148 I CYS 474 1_555 J SG CYS 152 I CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 K SG CYS 22 J CYS 529 1_555 K SG CYS 96 J CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf24 L SG CYS 23 K CYS 644 1_555 L SG CYS 89 K CYS 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 11 A ASN 15 1_555 P C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale2 A ND2 ASN 23 A ASN 27 1_555 Q C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.529 ? covale ? covale3 A ND2 ASN 54 A ASN 58 1_555 R C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale4 A ND2 ASN 87 A ASN 91 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? covale ? covale5 A ND2 ASN 125 A ASN 129 1_555 S C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale6 E ND2 ASN 11 C ASN 15 1_555 T C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale7 E ND2 ASN 23 C ASN 27 1_555 U C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? covale ? covale8 E ND2 ASN 54 C ASN 58 1_555 V C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.525 ? covale ? covale9 E ND2 ASN 87 C ASN 91 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? covale ? covale10 E ND2 ASN 125 C ASN 129 1_555 W C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale11 I ND2 ASN 11 G ASN 15 1_555 X C1 NAG . G NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale12 I ND2 ASN 23 G ASN 27 1_555 Y C1 NAG . G NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? covale ? covale13 I ND2 ASN 54 G ASN 58 1_555 Z C1 NAG . G NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale14 I ND2 ASN 87 G ASN 91 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? covale ? covale15 I ND2 ASN 125 G ASN 129 1_555 AA C1 NAG . G NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale16 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? covale ? covale17 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale18 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7SCO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 6 NAG A 1 401 327 NAG NAG . Q 6 NAG A 1 402 328 NAG NAG . R 6 NAG A 1 403 329 NAG NAG . S 6 NAG A 1 404 331 NAG NAG . T 6 NAG C 1 401 327 NAG NAG . U 6 NAG C 1 402 328 NAG NAG . V 6 NAG C 1 403 329 NAG NAG . W 6 NAG C 1 404 331 NAG NAG . X 6 NAG G 1 401 327 NAG NAG . Y 6 NAG G 1 402 328 NAG NAG . Z 6 NAG G 1 403 329 NAG NAG . AA 6 NAG G 1 404 331 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . R 6 153.383 166.973 158.094 1 90.85 ? C1 NAG 403 A 1 HETATM 2 C C2 NAG . . . R 6 152.885 167.145 159.606 1 92.4 ? C2 NAG 403 A 1 HETATM 3 C C3 NAG . . . R 6 152.315 165.766 160.09 1 92.81 ? C3 NAG 403 A 1 HETATM 4 C C4 NAG . . . R 6 151.143 165.314 159.149 1 101.49 ? C4 NAG 403 A 1 HETATM 5 C C5 NAG . . . R 6 151.674 165.211 157.673 1 100.57 ? C5 NAG 403 A 1 HETATM 6 C C6 NAG . . . R 6 150.573 164.868 156.664 1 101.03 ? C6 NAG 403 A 1 HETATM 7 C C7 NAG . . . R 6 154.225 168.787 160.937 1 79.19 ? C7 NAG 403 A 1 HETATM 8 C C8 NAG . . . R 6 155.453 169.098 161.742 1 74.67 ? C8 NAG 403 A 1 HETATM 9 N N2 NAG . . . R 6 154.053 167.548 160.441 1 86.15 ? N2 NAG 403 A 1 HETATM 10 O O3 NAG . . . R 6 151.822 165.905 161.436 1 100.55 ? O3 NAG 403 A 1 HETATM 11 O O4 NAG . . . R 6 150.657 164.039 159.577 1 105.37 ? O4 NAG 403 A 1 HETATM 12 O O5 NAG . . . R 6 152.252 166.524 157.261 1 93.97 ? O5 NAG 403 A 1 HETATM 13 O O6 NAG . . . R 6 151.104 164.628 155.363 1 102.97 ? O6 NAG 403 A 1 HETATM 14 O O7 NAG . . . R 6 153.392 169.687 160.739 1 79.23 ? O7 NAG 403 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 14 #