data_7SDR # _model_server_result.job_id Fq036upt9FrlVdm2mgncvQ _model_server_result.datetime_utc '2024-11-16 07:41:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":501}' # _entry.id 7SDR # _exptl.entry_id 7SDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-({methyl[(1R)-1-(naphthalen-1-yl)ethyl]amino}methyl)phenol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SDR _cell.length_a 99.074 _cell.length_b 112.605 _cell.length_c 127.677 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,Q 1 1 B,G,H,I,J,K,L,M,R 2 1 C,N,O,P,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 192 A CYS 189 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A SG CYS 195 A CYS 192 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc3 A SG CYS 227 A CYS 224 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc4 A SG CYS 229 A CYS 226 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc5 B SG CYS 192 B CYS 189 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 B SG CYS 195 B CYS 192 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc7 B SG CYS 227 B CYS 224 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc8 B SG CYS 229 B CYS 226 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc9 C SG CYS 192 C CYS 189 1_555 O ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc10 C SG CYS 195 C CYS 192 1_555 O ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc11 C SG CYS 227 C CYS 224 1_555 O ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc12 C SG CYS 229 C CYS 226 1_555 O ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? # _chem_comp.formula 'C20 H21 N O' _chem_comp.formula_weight 291.387 _chem_comp.id JW9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-({methyl[(1R)-1-(naphthalen-1-yl)ethyl]amino}methyl)phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C34 JW9 sing 195 n n C33 C34 JW9 doub 196 n y C33 C32 JW9 sing 197 n y C34 C35 JW9 sing 198 n y C32 C31 JW9 doub 199 n y C35 C36 JW9 doub 200 n y C31 C36 JW9 sing 201 n y C31 C22 JW9 sing 202 n n C23 N1 JW9 sing 203 n n N1 C22 JW9 sing 204 n n N1 C20 JW9 sing 205 n n C20 C21 JW9 sing 206 n n C20 C5 JW9 sing 207 n n C5 C4 JW9 doub 208 n y C5 C6 JW9 sing 209 n y C4 C3 JW9 sing 210 n y C11 C6 JW9 doub 211 n y C11 C12 JW9 sing 212 n y C6 C1 JW9 sing 213 n y C3 C2 JW9 doub 214 n y C12 C13 JW9 doub 215 n y C1 C2 JW9 sing 216 n y C1 C14 JW9 doub 217 n y C13 C14 JW9 sing 218 n y O1 H1 JW9 sing 219 n n C33 H2 JW9 sing 220 n n C32 H3 JW9 sing 221 n n C35 H4 JW9 sing 222 n n C36 H5 JW9 sing 223 n n C22 H6 JW9 sing 224 n n C22 H7 JW9 sing 225 n n C23 H9 JW9 sing 226 n n C23 H10 JW9 sing 227 n n C23 H11 JW9 sing 228 n n C20 H12 JW9 sing 229 n n C21 H13 JW9 sing 230 n n C21 H14 JW9 sing 231 n n C21 H15 JW9 sing 232 n n C4 H16 JW9 sing 233 n n C3 H17 JW9 sing 234 n n C2 H18 JW9 sing 235 n n C14 H19 JW9 sing 236 n n C13 H20 JW9 sing 237 n n C12 H21 JW9 sing 238 n n C11 H22 JW9 sing 239 n n # _atom_sites.entry_id 7SDR _atom_sites.fract_transf_matrix[1][1] 0.010093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 JW9 A 1 501 501 JW9 JW9 . E 3 ZN A 1 502 502 ZN ZN . F 4 EDO A 1 503 503 EDO EDO . G 2 JW9 B 1 501 501 JW9 JW9 . H 3 ZN B 1 502 502 ZN ZN . I 5 CL B 1 503 503 CL CL . J 6 GOL B 1 504 504 GOL GOL . K 4 EDO B 1 505 505 EDO EDO . L 4 EDO B 1 506 506 EDO EDO . M 4 EDO B 1 507 507 EDO EDO . N 2 JW9 C 1 501 501 JW9 JW9 . O 3 ZN C 1 502 502 ZN ZN . P 4 EDO C 1 503 503 EDO EDO . Q 7 HOH A 1 601 79 HOH HOH . Q 7 HOH A 2 602 44 HOH HOH . Q 7 HOH A 3 603 67 HOH HOH . Q 7 HOH A 4 604 22 HOH HOH . Q 7 HOH A 5 605 85 HOH HOH . Q 7 HOH A 6 606 38 HOH HOH . Q 7 HOH A 7 607 70 HOH HOH . Q 7 HOH A 8 608 59 HOH HOH . Q 7 HOH A 9 609 126 HOH HOH . Q 7 HOH A 10 610 78 HOH HOH . Q 7 HOH A 11 611 52 HOH HOH . Q 7 HOH A 12 612 39 HOH HOH . Q 7 HOH A 13 613 28 HOH HOH . Q 7 HOH A 14 614 35 HOH HOH . Q 7 HOH A 15 615 141 HOH HOH . Q 7 HOH A 16 616 87 HOH HOH . Q 7 HOH A 17 617 82 HOH HOH . Q 7 HOH A 18 618 132 HOH HOH . Q 7 HOH A 19 619 41 HOH HOH . Q 7 HOH A 20 620 30 HOH HOH . Q 7 HOH A 21 621 95 HOH HOH . Q 7 HOH A 22 622 26 HOH HOH . Q 7 HOH A 23 623 137 HOH HOH . Q 7 HOH A 24 624 99 HOH HOH . Q 7 HOH A 25 625 96 HOH HOH . Q 7 HOH A 26 626 57 HOH HOH . Q 7 HOH A 27 627 47 HOH HOH . Q 7 HOH A 28 628 45 HOH HOH . Q 7 HOH A 29 629 145 HOH HOH . Q 7 HOH A 30 630 64 HOH HOH . Q 7 HOH A 31 631 18 HOH HOH . Q 7 HOH A 32 632 8 HOH HOH . Q 7 HOH A 33 633 4 HOH HOH . Q 7 HOH A 34 634 130 HOH HOH . Q 7 HOH A 35 635 92 HOH HOH . Q 7 HOH A 36 636 58 HOH HOH . Q 7 HOH A 37 637 68 HOH HOH . Q 7 HOH A 38 638 9 HOH HOH . Q 7 HOH A 39 639 34 HOH HOH . Q 7 HOH A 40 640 151 HOH HOH . Q 7 HOH A 41 641 69 HOH HOH . Q 7 HOH A 42 642 104 HOH HOH . Q 7 HOH A 43 643 54 HOH HOH . Q 7 HOH A 44 644 127 HOH HOH . Q 7 HOH A 45 645 128 HOH HOH . Q 7 HOH A 46 646 3 HOH HOH . Q 7 HOH A 47 647 121 HOH HOH . Q 7 HOH A 48 648 6 HOH HOH . Q 7 HOH A 49 649 125 HOH HOH . Q 7 HOH A 50 650 142 HOH HOH . Q 7 HOH A 51 651 129 HOH HOH . Q 7 HOH A 52 652 158 HOH HOH . Q 7 HOH A 53 653 140 HOH HOH . Q 7 HOH A 54 654 14 HOH HOH . Q 7 HOH A 55 655 77 HOH HOH . Q 7 HOH A 56 656 107 HOH HOH . Q 7 HOH A 57 657 89 HOH HOH . Q 7 HOH A 58 658 108 HOH HOH . Q 7 HOH A 59 659 157 HOH HOH . Q 7 HOH A 60 660 109 HOH HOH . Q 7 HOH A 61 661 100 HOH HOH . Q 7 HOH A 62 662 134 HOH HOH . Q 7 HOH A 63 663 136 HOH HOH . Q 7 HOH A 64 664 135 HOH HOH . Q 7 HOH A 65 665 123 HOH HOH . R 7 HOH B 1 601 40 HOH HOH . R 7 HOH B 2 602 66 HOH HOH . R 7 HOH B 3 603 83 HOH HOH . R 7 HOH B 4 604 86 HOH HOH . R 7 HOH B 5 605 93 HOH HOH . R 7 HOH B 6 606 2 HOH HOH . R 7 HOH B 7 607 37 HOH HOH . R 7 HOH B 8 608 32 HOH HOH . R 7 HOH B 9 609 138 HOH HOH . R 7 HOH B 10 610 72 HOH HOH . R 7 HOH B 11 611 1 HOH HOH . R 7 HOH B 12 612 17 HOH HOH . R 7 HOH B 13 613 101 HOH HOH . R 7 HOH B 14 614 53 HOH HOH . R 7 HOH B 15 615 115 HOH HOH . R 7 HOH B 16 616 149 HOH HOH . R 7 HOH B 17 617 153 HOH HOH . R 7 HOH B 18 618 19 HOH HOH . R 7 HOH B 19 619 154 HOH HOH . R 7 HOH B 20 620 98 HOH HOH . R 7 HOH B 21 621 76 HOH HOH . R 7 HOH B 22 622 105 HOH HOH . R 7 HOH B 23 623 50 HOH HOH . R 7 HOH B 24 624 97 HOH HOH . R 7 HOH B 25 625 20 HOH HOH . R 7 HOH B 26 626 25 HOH HOH . R 7 HOH B 27 627 102 HOH HOH . R 7 HOH B 28 628 10 HOH HOH . R 7 HOH B 29 629 152 HOH HOH . R 7 HOH B 30 630 144 HOH HOH . R 7 HOH B 31 631 118 HOH HOH . R 7 HOH B 32 632 62 HOH HOH . R 7 HOH B 33 633 75 HOH HOH . R 7 HOH B 34 634 94 HOH HOH . R 7 HOH B 35 635 11 HOH HOH . R 7 HOH B 36 636 21 HOH HOH . R 7 HOH B 37 637 16 HOH HOH . R 7 HOH B 38 638 119 HOH HOH . R 7 HOH B 39 639 74 HOH HOH . R 7 HOH B 40 640 24 HOH HOH . R 7 HOH B 41 641 51 HOH HOH . R 7 HOH B 42 642 27 HOH HOH . R 7 HOH B 43 643 113 HOH HOH . R 7 HOH B 44 644 33 HOH HOH . R 7 HOH B 45 645 88 HOH HOH . R 7 HOH B 46 646 5 HOH HOH . R 7 HOH B 47 647 116 HOH HOH . R 7 HOH B 48 648 120 HOH HOH . R 7 HOH B 49 649 103 HOH HOH . R 7 HOH B 50 650 117 HOH HOH . R 7 HOH B 51 651 31 HOH HOH . R 7 HOH B 52 652 112 HOH HOH . R 7 HOH B 53 653 143 HOH HOH . R 7 HOH B 54 654 15 HOH HOH . R 7 HOH B 55 655 147 HOH HOH . R 7 HOH B 56 656 155 HOH HOH . R 7 HOH B 57 657 111 HOH HOH . R 7 HOH B 58 658 56 HOH HOH . R 7 HOH B 59 659 146 HOH HOH . R 7 HOH B 60 660 91 HOH HOH . R 7 HOH B 61 661 114 HOH HOH . R 7 HOH B 62 662 55 HOH HOH . R 7 HOH B 63 663 7 HOH HOH . R 7 HOH B 64 664 48 HOH HOH . R 7 HOH B 65 665 12 HOH HOH . R 7 HOH B 66 666 63 HOH HOH . R 7 HOH B 67 667 148 HOH HOH . R 7 HOH B 68 668 110 HOH HOH . R 7 HOH B 69 669 131 HOH HOH . R 7 HOH B 70 670 159 HOH HOH . R 7 HOH B 71 671 156 HOH HOH . R 7 HOH B 72 672 133 HOH HOH . R 7 HOH B 73 673 80 HOH HOH . S 7 HOH C 1 601 81 HOH HOH . S 7 HOH C 2 602 36 HOH HOH . S 7 HOH C 3 603 23 HOH HOH . S 7 HOH C 4 604 42 HOH HOH . S 7 HOH C 5 605 43 HOH HOH . S 7 HOH C 6 606 71 HOH HOH . S 7 HOH C 7 607 49 HOH HOH . S 7 HOH C 8 608 13 HOH HOH . S 7 HOH C 9 609 90 HOH HOH . S 7 HOH C 10 610 150 HOH HOH . S 7 HOH C 11 611 65 HOH HOH . S 7 HOH C 12 612 122 HOH HOH . S 7 HOH C 13 613 60 HOH HOH . S 7 HOH C 14 614 61 HOH HOH . S 7 HOH C 15 615 46 HOH HOH . S 7 HOH C 16 616 73 HOH HOH . S 7 HOH C 17 617 139 HOH HOH . S 7 HOH C 18 618 29 HOH HOH . S 7 HOH C 19 619 84 HOH HOH . S 7 HOH C 20 620 106 HOH HOH . S 7 HOH C 21 621 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 JW9 . . . N 2 4.706 43.175 67.588 1 84.61 ? O1 JW9 501 C 1 HETATM 2 C C34 JW9 . . . N 2 3.837 44.157 67.888 1 80.53 ? C34 JW9 501 C 1 HETATM 3 C C33 JW9 . . . N 2 3.148 44.092 69.095 1 75.6 ? C33 JW9 501 C 1 HETATM 4 C C32 JW9 . . . N 2 2.237 45.086 69.391 1 76.41 ? C32 JW9 501 C 1 HETATM 5 C C35 JW9 . . . N 2 3.657 45.204 66.97 1 83.42 ? C35 JW9 501 C 1 HETATM 6 C C36 JW9 . . . N 2 2.743 46.223 67.271 1 82.33 ? C36 JW9 501 C 1 HETATM 7 C C31 JW9 . . . N 2 2.022 46.15 68.482 1 78.81 ? C31 JW9 501 C 1 HETATM 8 C C22 JW9 . . . N 2 1.05 47.277 68.821 1 76 ? C22 JW9 501 C 1 HETATM 9 N N1 JW9 . . . N 2 -0.373 47.059 68.412 1 73.3 ? N1 JW9 501 C 1 HETATM 10 C C23 JW9 . . . N 2 -0.813 45.731 68.933 1 70.71 ? C23 JW9 501 C 1 HETATM 11 C C20 JW9 . . . N 2 -1.328 48.226 68.739 1 66.9 ? C20 JW9 501 C 1 HETATM 12 C C21 JW9 . . . N 2 -2.632 47.994 67.968 1 66.52 ? C21 JW9 501 C 1 HETATM 13 C C5 JW9 . . . N 2 -0.837 49.621 68.392 1 61.24 ? C5 JW9 501 C 1 HETATM 14 C C4 JW9 . . . N 2 -0.845 50.062 67.052 1 60.55 ? C4 JW9 501 C 1 HETATM 15 C C3 JW9 . . . N 2 -0.383 51.338 66.633 1 59.41 ? C3 JW9 501 C 1 HETATM 16 C C2 JW9 . . . N 2 0.124 52.278 67.523 1 56.55 ? C2 JW9 501 C 1 HETATM 17 C C1 JW9 . . . N 2 0.2 51.951 68.857 1 56.77 ? C1 JW9 501 C 1 HETATM 18 C C6 JW9 . . . N 2 -0.266 50.607 69.366 1 58.6 ? C6 JW9 501 C 1 HETATM 19 C C14 JW9 . . . N 2 0.703 52.889 69.731 1 56.88 ? C14 JW9 501 C 1 HETATM 20 C C13 JW9 . . . N 2 0.787 52.553 71.081 1 57.83 ? C13 JW9 501 C 1 HETATM 21 C C12 JW9 . . . N 2 0.345 51.314 71.565 1 56.84 ? C12 JW9 501 C 1 HETATM 22 C C11 JW9 . . . N 2 -0.176 50.344 70.722 1 57 ? C11 JW9 501 C 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #