data_7SDR
#
_model_server_result.job_id            vHB91hCTkPKAqK-BuNaE3Q 
_model_server_result.datetime_utc      '2024-11-16 07:28:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7sdr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":505}' 
#
_entry.id    7SDR 
#
_exptl.entry_id    7SDR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7SDR 
_cell.length_a            99.074 
_cell.length_b            112.605 
_cell.length_c            127.677 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7SDR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,Q 1 1 
B,G,H,I,J,K,L,M,R 2 1 
C,N,O,P,S 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 192 A CYS 189 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc2 A SG CYS 195 A CYS 192 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc3 A SG CYS 227 A CYS 224 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc4 A SG CYS 229 A CYS 226 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc5 B SG CYS 192 B CYS 189 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc6 B SG CYS 195 B CYS 192 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc7 B SG CYS 227 B CYS 224 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc8 B SG CYS 229 B CYS 226 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc9 C SG CYS 192 C CYS 189 1_555 O ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc10 C SG CYS 195 C CYS 192 1_555 O ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc11 C SG CYS 227 C CYS 224 1_555 O ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc12 C SG CYS 229 C CYS 226 1_555 O ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7SDR 
_atom_sites.fract_transf_matrix[1][1]    0.010093 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007832 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 JW9 A 1 501 501 JW9 JW9 . 
E 3 ZN A 1 502 502 ZN ZN . 
F 4 EDO A 1 503 503 EDO EDO . 
G 2 JW9 B 1 501 501 JW9 JW9 . 
H 3 ZN B 1 502 502 ZN ZN . 
I 5 CL B 1 503 503 CL CL . 
J 6 GOL B 1 504 504 GOL GOL . 
K 4 EDO B 1 505 505 EDO EDO . 
L 4 EDO B 1 506 506 EDO EDO . 
M 4 EDO B 1 507 507 EDO EDO . 
N 2 JW9 C 1 501 501 JW9 JW9 . 
O 3 ZN C 1 502 502 ZN ZN . 
P 4 EDO C 1 503 503 EDO EDO . 
Q 7 HOH A 1 601 79 HOH HOH . 
Q 7 HOH A 2 602 44 HOH HOH . 
Q 7 HOH A 3 603 67 HOH HOH . 
Q 7 HOH A 4 604 22 HOH HOH . 
Q 7 HOH A 5 605 85 HOH HOH . 
Q 7 HOH A 6 606 38 HOH HOH . 
Q 7 HOH A 7 607 70 HOH HOH . 
Q 7 HOH A 8 608 59 HOH HOH . 
Q 7 HOH A 9 609 126 HOH HOH . 
Q 7 HOH A 10 610 78 HOH HOH . 
Q 7 HOH A 11 611 52 HOH HOH . 
Q 7 HOH A 12 612 39 HOH HOH . 
Q 7 HOH A 13 613 28 HOH HOH . 
Q 7 HOH A 14 614 35 HOH HOH . 
Q 7 HOH A 15 615 141 HOH HOH . 
Q 7 HOH A 16 616 87 HOH HOH . 
Q 7 HOH A 17 617 82 HOH HOH . 
Q 7 HOH A 18 618 132 HOH HOH . 
Q 7 HOH A 19 619 41 HOH HOH . 
Q 7 HOH A 20 620 30 HOH HOH . 
Q 7 HOH A 21 621 95 HOH HOH . 
Q 7 HOH A 22 622 26 HOH HOH . 
Q 7 HOH A 23 623 137 HOH HOH . 
Q 7 HOH A 24 624 99 HOH HOH . 
Q 7 HOH A 25 625 96 HOH HOH . 
Q 7 HOH A 26 626 57 HOH HOH . 
Q 7 HOH A 27 627 47 HOH HOH . 
Q 7 HOH A 28 628 45 HOH HOH . 
Q 7 HOH A 29 629 145 HOH HOH . 
Q 7 HOH A 30 630 64 HOH HOH . 
Q 7 HOH A 31 631 18 HOH HOH . 
Q 7 HOH A 32 632 8 HOH HOH . 
Q 7 HOH A 33 633 4 HOH HOH . 
Q 7 HOH A 34 634 130 HOH HOH . 
Q 7 HOH A 35 635 92 HOH HOH . 
Q 7 HOH A 36 636 58 HOH HOH . 
Q 7 HOH A 37 637 68 HOH HOH . 
Q 7 HOH A 38 638 9 HOH HOH . 
Q 7 HOH A 39 639 34 HOH HOH . 
Q 7 HOH A 40 640 151 HOH HOH . 
Q 7 HOH A 41 641 69 HOH HOH . 
Q 7 HOH A 42 642 104 HOH HOH . 
Q 7 HOH A 43 643 54 HOH HOH . 
Q 7 HOH A 44 644 127 HOH HOH . 
Q 7 HOH A 45 645 128 HOH HOH . 
Q 7 HOH A 46 646 3 HOH HOH . 
Q 7 HOH A 47 647 121 HOH HOH . 
Q 7 HOH A 48 648 6 HOH HOH . 
Q 7 HOH A 49 649 125 HOH HOH . 
Q 7 HOH A 50 650 142 HOH HOH . 
Q 7 HOH A 51 651 129 HOH HOH . 
Q 7 HOH A 52 652 158 HOH HOH . 
Q 7 HOH A 53 653 140 HOH HOH . 
Q 7 HOH A 54 654 14 HOH HOH . 
Q 7 HOH A 55 655 77 HOH HOH . 
Q 7 HOH A 56 656 107 HOH HOH . 
Q 7 HOH A 57 657 89 HOH HOH . 
Q 7 HOH A 58 658 108 HOH HOH . 
Q 7 HOH A 59 659 157 HOH HOH . 
Q 7 HOH A 60 660 109 HOH HOH . 
Q 7 HOH A 61 661 100 HOH HOH . 
Q 7 HOH A 62 662 134 HOH HOH . 
Q 7 HOH A 63 663 136 HOH HOH . 
Q 7 HOH A 64 664 135 HOH HOH . 
Q 7 HOH A 65 665 123 HOH HOH . 
R 7 HOH B 1 601 40 HOH HOH . 
R 7 HOH B 2 602 66 HOH HOH . 
R 7 HOH B 3 603 83 HOH HOH . 
R 7 HOH B 4 604 86 HOH HOH . 
R 7 HOH B 5 605 93 HOH HOH . 
R 7 HOH B 6 606 2 HOH HOH . 
R 7 HOH B 7 607 37 HOH HOH . 
R 7 HOH B 8 608 32 HOH HOH . 
R 7 HOH B 9 609 138 HOH HOH . 
R 7 HOH B 10 610 72 HOH HOH . 
R 7 HOH B 11 611 1 HOH HOH . 
R 7 HOH B 12 612 17 HOH HOH . 
R 7 HOH B 13 613 101 HOH HOH . 
R 7 HOH B 14 614 53 HOH HOH . 
R 7 HOH B 15 615 115 HOH HOH . 
R 7 HOH B 16 616 149 HOH HOH . 
R 7 HOH B 17 617 153 HOH HOH . 
R 7 HOH B 18 618 19 HOH HOH . 
R 7 HOH B 19 619 154 HOH HOH . 
R 7 HOH B 20 620 98 HOH HOH . 
R 7 HOH B 21 621 76 HOH HOH . 
R 7 HOH B 22 622 105 HOH HOH . 
R 7 HOH B 23 623 50 HOH HOH . 
R 7 HOH B 24 624 97 HOH HOH . 
R 7 HOH B 25 625 20 HOH HOH . 
R 7 HOH B 26 626 25 HOH HOH . 
R 7 HOH B 27 627 102 HOH HOH . 
R 7 HOH B 28 628 10 HOH HOH . 
R 7 HOH B 29 629 152 HOH HOH . 
R 7 HOH B 30 630 144 HOH HOH . 
R 7 HOH B 31 631 118 HOH HOH . 
R 7 HOH B 32 632 62 HOH HOH . 
R 7 HOH B 33 633 75 HOH HOH . 
R 7 HOH B 34 634 94 HOH HOH . 
R 7 HOH B 35 635 11 HOH HOH . 
R 7 HOH B 36 636 21 HOH HOH . 
R 7 HOH B 37 637 16 HOH HOH . 
R 7 HOH B 38 638 119 HOH HOH . 
R 7 HOH B 39 639 74 HOH HOH . 
R 7 HOH B 40 640 24 HOH HOH . 
R 7 HOH B 41 641 51 HOH HOH . 
R 7 HOH B 42 642 27 HOH HOH . 
R 7 HOH B 43 643 113 HOH HOH . 
R 7 HOH B 44 644 33 HOH HOH . 
R 7 HOH B 45 645 88 HOH HOH . 
R 7 HOH B 46 646 5 HOH HOH . 
R 7 HOH B 47 647 116 HOH HOH . 
R 7 HOH B 48 648 120 HOH HOH . 
R 7 HOH B 49 649 103 HOH HOH . 
R 7 HOH B 50 650 117 HOH HOH . 
R 7 HOH B 51 651 31 HOH HOH . 
R 7 HOH B 52 652 112 HOH HOH . 
R 7 HOH B 53 653 143 HOH HOH . 
R 7 HOH B 54 654 15 HOH HOH . 
R 7 HOH B 55 655 147 HOH HOH . 
R 7 HOH B 56 656 155 HOH HOH . 
R 7 HOH B 57 657 111 HOH HOH . 
R 7 HOH B 58 658 56 HOH HOH . 
R 7 HOH B 59 659 146 HOH HOH . 
R 7 HOH B 60 660 91 HOH HOH . 
R 7 HOH B 61 661 114 HOH HOH . 
R 7 HOH B 62 662 55 HOH HOH . 
R 7 HOH B 63 663 7 HOH HOH . 
R 7 HOH B 64 664 48 HOH HOH . 
R 7 HOH B 65 665 12 HOH HOH . 
R 7 HOH B 66 666 63 HOH HOH . 
R 7 HOH B 67 667 148 HOH HOH . 
R 7 HOH B 68 668 110 HOH HOH . 
R 7 HOH B 69 669 131 HOH HOH . 
R 7 HOH B 70 670 159 HOH HOH . 
R 7 HOH B 71 671 156 HOH HOH . 
R 7 HOH B 72 672 133 HOH HOH . 
R 7 HOH B 73 673 80 HOH HOH . 
S 7 HOH C 1 601 81 HOH HOH . 
S 7 HOH C 2 602 36 HOH HOH . 
S 7 HOH C 3 603 23 HOH HOH . 
S 7 HOH C 4 604 42 HOH HOH . 
S 7 HOH C 5 605 43 HOH HOH . 
S 7 HOH C 6 606 71 HOH HOH . 
S 7 HOH C 7 607 49 HOH HOH . 
S 7 HOH C 8 608 13 HOH HOH . 
S 7 HOH C 9 609 90 HOH HOH . 
S 7 HOH C 10 610 150 HOH HOH . 
S 7 HOH C 11 611 65 HOH HOH . 
S 7 HOH C 12 612 122 HOH HOH . 
S 7 HOH C 13 613 60 HOH HOH . 
S 7 HOH C 14 614 61 HOH HOH . 
S 7 HOH C 15 615 46 HOH HOH . 
S 7 HOH C 16 616 73 HOH HOH . 
S 7 HOH C 17 617 139 HOH HOH . 
S 7 HOH C 18 618 29 HOH HOH . 
S 7 HOH C 19 619 84 HOH HOH . 
S 7 HOH C 20 620 106 HOH HOH . 
S 7 HOH C 21 621 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 4 3.433 41.893 47.724 1 57.36 ? C1 EDO 505 B 1 
HETATM 2 O O1 EDO . . . K 4 2.13 42.309 48.157 1 56.1 ? O1 EDO 505 B 1 
HETATM 3 C C2 EDO . . . K 4 4.514 42.885 47.941 1 54.53 ? C2 EDO 505 B 1 
HETATM 4 O O2 EDO . . . K 4 4.223 44.121 47.335 1 54 ? O2 EDO 505 B 1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#