data_7SE7 # _model_server_result.job_id TxFvc3UYqBBHc82XBeC2lA _model_server_result.datetime_utc '2025-02-18 06:51:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7se7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7SE7 # _exptl.entry_id 7SE7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SE7 _cell.length_a 69.276 _cell.length_b 138.924 _cell.length_c 65.665 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SE7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 7SE7 _atom_sites.fract_transf_matrix[1][1] 0.014435 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 401 401 SAM SAM . C 3 HOH A 1 501 36 HOH HOH . C 3 HOH A 2 502 85 HOH HOH . C 3 HOH A 3 503 30 HOH HOH . C 3 HOH A 4 504 150 HOH HOH . C 3 HOH A 5 505 80 HOH HOH . C 3 HOH A 6 506 42 HOH HOH . C 3 HOH A 7 507 129 HOH HOH . C 3 HOH A 8 508 169 HOH HOH . C 3 HOH A 9 509 208 HOH HOH . C 3 HOH A 10 510 20 HOH HOH . C 3 HOH A 11 511 71 HOH HOH . C 3 HOH A 12 512 168 HOH HOH . C 3 HOH A 13 513 48 HOH HOH . C 3 HOH A 14 514 15 HOH HOH . C 3 HOH A 15 515 95 HOH HOH . C 3 HOH A 16 516 213 HOH HOH . C 3 HOH A 17 517 33 HOH HOH . C 3 HOH A 18 518 68 HOH HOH . C 3 HOH A 19 519 53 HOH HOH . C 3 HOH A 20 520 153 HOH HOH . C 3 HOH A 21 521 2 HOH HOH . C 3 HOH A 22 522 35 HOH HOH . C 3 HOH A 23 523 1 HOH HOH . C 3 HOH A 24 524 7 HOH HOH . C 3 HOH A 25 525 9 HOH HOH . C 3 HOH A 26 526 66 HOH HOH . C 3 HOH A 27 527 67 HOH HOH . C 3 HOH A 28 528 59 HOH HOH . C 3 HOH A 29 529 123 HOH HOH . C 3 HOH A 30 530 17 HOH HOH . C 3 HOH A 31 531 84 HOH HOH . C 3 HOH A 32 532 165 HOH HOH . C 3 HOH A 33 533 225 HOH HOH . C 3 HOH A 34 534 50 HOH HOH . C 3 HOH A 35 535 116 HOH HOH . C 3 HOH A 36 536 89 HOH HOH . C 3 HOH A 37 537 26 HOH HOH . C 3 HOH A 38 538 194 HOH HOH . C 3 HOH A 39 539 5 HOH HOH . C 3 HOH A 40 540 163 HOH HOH . C 3 HOH A 41 541 52 HOH HOH . C 3 HOH A 42 542 22 HOH HOH . C 3 HOH A 43 543 86 HOH HOH . C 3 HOH A 44 544 76 HOH HOH . C 3 HOH A 45 545 46 HOH HOH . C 3 HOH A 46 546 58 HOH HOH . C 3 HOH A 47 547 128 HOH HOH . C 3 HOH A 48 548 161 HOH HOH . C 3 HOH A 49 549 69 HOH HOH . C 3 HOH A 50 550 4 HOH HOH . C 3 HOH A 51 551 29 HOH HOH . C 3 HOH A 52 552 125 HOH HOH . C 3 HOH A 53 553 14 HOH HOH . C 3 HOH A 54 554 88 HOH HOH . C 3 HOH A 55 555 174 HOH HOH . C 3 HOH A 56 556 135 HOH HOH . C 3 HOH A 57 557 31 HOH HOH . C 3 HOH A 58 558 184 HOH HOH . C 3 HOH A 59 559 93 HOH HOH . C 3 HOH A 60 560 8 HOH HOH . C 3 HOH A 61 561 62 HOH HOH . C 3 HOH A 62 562 196 HOH HOH . C 3 HOH A 63 563 47 HOH HOH . C 3 HOH A 64 564 60 HOH HOH . C 3 HOH A 65 565 217 HOH HOH . C 3 HOH A 66 566 81 HOH HOH . C 3 HOH A 67 567 82 HOH HOH . C 3 HOH A 68 568 12 HOH HOH . C 3 HOH A 69 569 130 HOH HOH . C 3 HOH A 70 570 63 HOH HOH . C 3 HOH A 71 571 157 HOH HOH . C 3 HOH A 72 572 92 HOH HOH . C 3 HOH A 73 573 175 HOH HOH . C 3 HOH A 74 574 25 HOH HOH . C 3 HOH A 75 575 18 HOH HOH . C 3 HOH A 76 576 75 HOH HOH . C 3 HOH A 77 577 115 HOH HOH . C 3 HOH A 78 578 109 HOH HOH . C 3 HOH A 79 579 51 HOH HOH . C 3 HOH A 80 580 24 HOH HOH . C 3 HOH A 81 581 167 HOH HOH . C 3 HOH A 82 582 13 HOH HOH . C 3 HOH A 83 583 11 HOH HOH . C 3 HOH A 84 584 193 HOH HOH . C 3 HOH A 85 585 21 HOH HOH . C 3 HOH A 86 586 45 HOH HOH . C 3 HOH A 87 587 102 HOH HOH . C 3 HOH A 88 588 113 HOH HOH . C 3 HOH A 89 589 100 HOH HOH . C 3 HOH A 90 590 152 HOH HOH . C 3 HOH A 91 591 127 HOH HOH . C 3 HOH A 92 592 16 HOH HOH . C 3 HOH A 93 593 101 HOH HOH . C 3 HOH A 94 594 72 HOH HOH . C 3 HOH A 95 595 98 HOH HOH . C 3 HOH A 96 596 40 HOH HOH . C 3 HOH A 97 597 19 HOH HOH . C 3 HOH A 98 598 204 HOH HOH . C 3 HOH A 99 599 3 HOH HOH . C 3 HOH A 100 600 126 HOH HOH . C 3 HOH A 101 601 112 HOH HOH . C 3 HOH A 102 602 6 HOH HOH . C 3 HOH A 103 603 73 HOH HOH . C 3 HOH A 104 604 10 HOH HOH . C 3 HOH A 105 605 104 HOH HOH . C 3 HOH A 106 606 110 HOH HOH . C 3 HOH A 107 607 192 HOH HOH . C 3 HOH A 108 608 34 HOH HOH . C 3 HOH A 109 609 105 HOH HOH . C 3 HOH A 110 610 140 HOH HOH . C 3 HOH A 111 611 114 HOH HOH . C 3 HOH A 112 612 64 HOH HOH . C 3 HOH A 113 613 173 HOH HOH . C 3 HOH A 114 614 219 HOH HOH . C 3 HOH A 115 615 43 HOH HOH . C 3 HOH A 116 616 160 HOH HOH . C 3 HOH A 117 617 44 HOH HOH . C 3 HOH A 118 618 158 HOH HOH . C 3 HOH A 119 619 65 HOH HOH . C 3 HOH A 120 620 210 HOH HOH . C 3 HOH A 121 621 74 HOH HOH . C 3 HOH A 122 622 108 HOH HOH . C 3 HOH A 123 623 41 HOH HOH . C 3 HOH A 124 624 55 HOH HOH . C 3 HOH A 125 625 187 HOH HOH . C 3 HOH A 126 626 23 HOH HOH . C 3 HOH A 127 627 180 HOH HOH . C 3 HOH A 128 628 223 HOH HOH . C 3 HOH A 129 629 57 HOH HOH . C 3 HOH A 130 630 138 HOH HOH . C 3 HOH A 131 631 178 HOH HOH . C 3 HOH A 132 632 166 HOH HOH . C 3 HOH A 133 633 37 HOH HOH . C 3 HOH A 134 634 111 HOH HOH . C 3 HOH A 135 635 221 HOH HOH . C 3 HOH A 136 636 91 HOH HOH . C 3 HOH A 137 637 190 HOH HOH . C 3 HOH A 138 638 124 HOH HOH . C 3 HOH A 139 639 96 HOH HOH . C 3 HOH A 140 640 133 HOH HOH . C 3 HOH A 141 641 181 HOH HOH . C 3 HOH A 142 642 106 HOH HOH . C 3 HOH A 143 643 159 HOH HOH . C 3 HOH A 144 644 199 HOH HOH . C 3 HOH A 145 645 70 HOH HOH . C 3 HOH A 146 646 117 HOH HOH . C 3 HOH A 147 647 121 HOH HOH . C 3 HOH A 148 648 149 HOH HOH . C 3 HOH A 149 649 189 HOH HOH . C 3 HOH A 150 650 222 HOH HOH . C 3 HOH A 151 651 170 HOH HOH . C 3 HOH A 152 652 197 HOH HOH . C 3 HOH A 153 653 49 HOH HOH . C 3 HOH A 154 654 162 HOH HOH . C 3 HOH A 155 655 90 HOH HOH . C 3 HOH A 156 656 122 HOH HOH . C 3 HOH A 157 657 200 HOH HOH . C 3 HOH A 158 658 146 HOH HOH . C 3 HOH A 159 659 148 HOH HOH . C 3 HOH A 160 660 139 HOH HOH . C 3 HOH A 161 661 182 HOH HOH . C 3 HOH A 162 662 226 HOH HOH . C 3 HOH A 163 663 78 HOH HOH . C 3 HOH A 164 664 119 HOH HOH . C 3 HOH A 165 665 185 HOH HOH . C 3 HOH A 166 666 188 HOH HOH . C 3 HOH A 167 667 164 HOH HOH . C 3 HOH A 168 668 176 HOH HOH . C 3 HOH A 169 669 79 HOH HOH . C 3 HOH A 170 670 216 HOH HOH . C 3 HOH A 171 671 77 HOH HOH . C 3 HOH A 172 672 56 HOH HOH . C 3 HOH A 173 673 97 HOH HOH . C 3 HOH A 174 674 198 HOH HOH . C 3 HOH A 175 675 39 HOH HOH . C 3 HOH A 176 676 220 HOH HOH . C 3 HOH A 177 677 145 HOH HOH . C 3 HOH A 178 678 147 HOH HOH . C 3 HOH A 179 679 154 HOH HOH . C 3 HOH A 180 680 172 HOH HOH . C 3 HOH A 181 681 134 HOH HOH . C 3 HOH A 182 682 179 HOH HOH . C 3 HOH A 183 683 195 HOH HOH . C 3 HOH A 184 684 131 HOH HOH . C 3 HOH A 185 685 183 HOH HOH . C 3 HOH A 186 686 186 HOH HOH . C 3 HOH A 187 687 215 HOH HOH . C 3 HOH A 188 688 136 HOH HOH . C 3 HOH A 189 689 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 19.316 26.015 6.642 1 16.16 ? N SAM 401 A 1 HETATM 2 C CA SAM . . . B 2 19.971 25.264 7.634 1 28.65 ? CA SAM 401 A 1 HETATM 3 C C SAM . . . B 2 19.719 23.712 7.325 1 24.24 ? C SAM 401 A 1 HETATM 4 O O SAM . . . B 2 20.732 22.98 7.286 1 22.68 ? O SAM 401 A 1 HETATM 5 O OXT SAM . . . B 2 18.542 23.334 7.112 1 22.26 ? OXT SAM 401 A 1 HETATM 6 C CB SAM . . . B 2 19.449 25.714 9.07 1 23.14 ? CB SAM 401 A 1 HETATM 7 C CG SAM . . . B 2 19.633 27.22 9.219 1 21.06 ? CG SAM 401 A 1 HETATM 8 S SD SAM . . . B 2 19.272 27.878 10.867 1 26 ? SD SAM 401 A 1 HETATM 9 C CE SAM . . . B 2 17.491 27.721 10.897 1 31.95 ? CE SAM 401 A 1 HETATM 10 C C5' SAM . . . B 2 19.51 29.689 10.636 1 21.26 ? C5' SAM 401 A 1 HETATM 11 C C4' SAM . . . B 2 20.945 30.004 10.271 1 18.35 ? C4' SAM 401 A 1 HETATM 12 O O4' SAM . . . B 2 21.03 31.324 9.692 1 16.25 ? O4' SAM 401 A 1 HETATM 13 C C3' SAM . . . B 2 21.928 29.978 11.454 1 16.03 ? C3' SAM 401 A 1 HETATM 14 O O3' SAM . . . B 2 23.077 29.179 11.197 1 16.91 ? O3' SAM 401 A 1 HETATM 15 C C2' SAM . . . B 2 22.317 31.461 11.625 1 15.7 ? C2' SAM 401 A 1 HETATM 16 O O2' SAM . . . B 2 23.659 31.62 12.098 1 15.69 ? O2' SAM 401 A 1 HETATM 17 C C1' SAM . . . B 2 22.191 31.957 10.194 1 15.84 ? C1' SAM 401 A 1 HETATM 18 N N9 SAM . . . B 2 22.04 33.406 10.048 1 15.5 ? N9 SAM 401 A 1 HETATM 19 C C8 SAM . . . B 2 21.151 34.215 10.69 1 18.05 ? C8 SAM 401 A 1 HETATM 20 N N7 SAM . . . B 2 21.211 35.477 10.319 1 17.87 ? N7 SAM 401 A 1 HETATM 21 C C5 SAM . . . B 2 22.221 35.484 9.36 1 13.91 ? C5 SAM 401 A 1 HETATM 22 C C6 SAM . . . B 2 22.787 36.52 8.596 1 14.78 ? C6 SAM 401 A 1 HETATM 23 N N6 SAM . . . B 2 22.445 37.799 8.725 1 16.4 ? N6 SAM 401 A 1 HETATM 24 N N1 SAM . . . B 2 23.773 36.196 7.716 1 14.58 ? N1 SAM 401 A 1 HETATM 25 C C2 SAM . . . B 2 24.174 34.919 7.646 1 14.14 ? C2 SAM 401 A 1 HETATM 26 N N3 SAM . . . B 2 23.716 33.868 8.334 1 16 ? N3 SAM 401 A 1 HETATM 27 C C4 SAM . . . B 2 22.735 34.212 9.175 1 16 ? C4 SAM 401 A 1 HETATM 28 H HN1 SAM . . . B 2 19.927 26.759 6.321 1 19.4 ? HN1 SAM 401 A 1 HETATM 29 H HN2 SAM . . . B 2 19.147 25.422 5.836 1 19.4 ? HN2 SAM 401 A 1 HETATM 30 H HA SAM . . . B 2 21.044 25.44 7.567 1 34.38 ? HA SAM 401 A 1 HETATM 31 H HB1 SAM . . . B 2 19.998 25.177 9.842 1 27.76 ? HB1 SAM 401 A 1 HETATM 32 H HB2 SAM . . . B 2 18.41 25.41 9.189 1 27.76 ? HB2 SAM 401 A 1 HETATM 33 H HG1 SAM . . . B 2 19.046 27.736 8.461 1 25.27 ? HG1 SAM 401 A 1 HETATM 34 H HG2 SAM . . . B 2 20.663 27.47 8.973 1 25.27 ? HG2 SAM 401 A 1 HETATM 35 H HE1 SAM . . . B 2 17.178 26.678 10.865 1 38.34 ? HE1 SAM 401 A 1 HETATM 36 H HE2 SAM . . . B 2 16.994 28.18 11.75 1 38.34 ? HE2 SAM 401 A 1 HETATM 37 H HE3 SAM . . . B 2 17.052 28.186 10.015 1 38.34 ? HE3 SAM 401 A 1 HETATM 38 H "H5'1" SAM . . . B 2 18.813 30.004 9.863 1 25.51 ? "H5'1" SAM 401 A 1 HETATM 39 H "H5'2" SAM . . . B 2 19.203 30.25 11.518 1 25.51 ? "H5'2" SAM 401 A 1 HETATM 40 H H4' SAM . . . B 2 21.297 29.366 9.463 1 22.02 ? H4' SAM 401 A 1 HETATM 41 H H3' SAM . . . B 2 21.461 29.587 12.357 1 19.23 ? H3' SAM 401 A 1 HETATM 42 H HO3' SAM . . . B 2 22.886 28.249 11.488 1 20.29 ? HO3' SAM 401 A 1 HETATM 43 H H2' SAM . . . B 2 21.63 31.952 12.312 1 18.84 ? H2' SAM 401 A 1 HETATM 44 H HO2' SAM . . . B 2 24.12 30.752 11.957 1 18.83 ? HO2' SAM 401 A 1 HETATM 45 H H1' SAM . . . B 2 23.029 31.65 9.571 1 19.01 ? H1' SAM 401 A 1 HETATM 46 H H8 SAM . . . B 2 20.454 33.85 11.442 1 21.67 ? H8 SAM 401 A 1 HETATM 47 H HN61 SAM . . . B 2 21.742 38.081 9.4 1 19.67 ? HN61 SAM 401 A 1 HETATM 48 H HN62 SAM . . . B 2 22.876 38.521 8.156 1 19.67 ? HN62 SAM 401 A 1 HETATM 49 H H2 SAM . . . B 2 24.975 34.726 6.935 1 16.97 ? H2 SAM 401 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 49 #