data_7SED
#
_model_server_result.job_id            yt6jw2v-7oPymIOMWo32Wg 
_model_server_result.datetime_utc      '2025-03-23 21:08:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7sed 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7SED 
#
_exptl.entry_id    7SED 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              246.232 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(piperidin-4-yl)-6-(trifluoromethyl)pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7SED 
_cell.length_a            69.291 
_cell.length_b            139.581 
_cell.length_c            66.249 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7SED 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H13 F3 N4' 
_chem_comp.formula_weight    246.232 
_chem_comp.id                8VD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(piperidin-4-yl)-6-(trifluoromethyl)pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F1 C 8VD sing 1 n n 
N3 C9 8VD doub 2 n y 
N3 C1 8VD sing 3 n y 
C9 N2 8VD sing 4 n y 
N2 C3 8VD doub 5 n y 
C1 C 8VD sing 6 n n 
C1 C2 8VD doub 7 n y 
C F 8VD sing 8 n n 
C F2 8VD sing 9 n n 
C3 C2 8VD sing 10 n y 
C3 N 8VD sing 11 n n 
N C4 8VD sing 12 n n 
C8 C4 8VD sing 13 n n 
C8 C7 8VD sing 14 n n 
C4 C5 8VD sing 15 n n 
C7 N1 8VD sing 16 n n 
C5 C6 8VD sing 17 n n 
N1 C6 8VD sing 18 n n 
N1 H7 8VD sing 19 n n 
C8 H11 8VD sing 20 n n 
C8 H10 8VD sing 21 n n 
C5 H3 8VD sing 22 n n 
C5 H4 8VD sing 23 n n 
N H1 8VD sing 24 n n 
C2 H 8VD sing 25 n n 
C4 H2 8VD sing 26 n n 
C6 H6 8VD sing 27 n n 
C6 H5 8VD sing 28 n n 
C7 H8 8VD sing 29 n n 
C7 H9 8VD sing 30 n n 
C9 H12 8VD sing 31 n n 
#
_atom_sites.entry_id                     7SED 
_atom_sites.fract_transf_matrix[1][1]    0.014432 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015095 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 8VD A 1 401 401 8VD E82 . 
C 3 FMT A 1 402 501 FMT FMT . 
D 4 HOH A 1 501 88 HOH HOH . 
D 4 HOH A 2 502 123 HOH HOH . 
D 4 HOH A 3 503 104 HOH HOH . 
D 4 HOH A 4 504 127 HOH HOH . 
D 4 HOH A 5 505 17 HOH HOH . 
D 4 HOH A 6 506 71 HOH HOH . 
D 4 HOH A 7 507 70 HOH HOH . 
D 4 HOH A 8 508 35 HOH HOH . 
D 4 HOH A 9 509 129 HOH HOH . 
D 4 HOH A 10 510 57 HOH HOH . 
D 4 HOH A 11 511 61 HOH HOH . 
D 4 HOH A 12 512 86 HOH HOH . 
D 4 HOH A 13 513 28 HOH HOH . 
D 4 HOH A 14 514 33 HOH HOH . 
D 4 HOH A 15 515 67 HOH HOH . 
D 4 HOH A 16 516 46 HOH HOH . 
D 4 HOH A 17 517 96 HOH HOH . 
D 4 HOH A 18 518 111 HOH HOH . 
D 4 HOH A 19 519 8 HOH HOH . 
D 4 HOH A 20 520 21 HOH HOH . 
D 4 HOH A 21 521 14 HOH HOH . 
D 4 HOH A 22 522 31 HOH HOH . 
D 4 HOH A 23 523 6 HOH HOH . 
D 4 HOH A 24 524 40 HOH HOH . 
D 4 HOH A 25 525 44 HOH HOH . 
D 4 HOH A 26 526 87 HOH HOH . 
D 4 HOH A 27 527 84 HOH HOH . 
D 4 HOH A 28 528 4 HOH HOH . 
D 4 HOH A 29 529 49 HOH HOH . 
D 4 HOH A 30 530 37 HOH HOH . 
D 4 HOH A 31 531 94 HOH HOH . 
D 4 HOH A 32 532 1 HOH HOH . 
D 4 HOH A 33 533 2 HOH HOH . 
D 4 HOH A 34 534 7 HOH HOH . 
D 4 HOH A 35 535 76 HOH HOH . 
D 4 HOH A 36 536 109 HOH HOH . 
D 4 HOH A 37 537 52 HOH HOH . 
D 4 HOH A 38 538 82 HOH HOH . 
D 4 HOH A 39 539 105 HOH HOH . 
D 4 HOH A 40 540 93 HOH HOH . 
D 4 HOH A 41 541 24 HOH HOH . 
D 4 HOH A 42 542 58 HOH HOH . 
D 4 HOH A 43 543 54 HOH HOH . 
D 4 HOH A 44 544 32 HOH HOH . 
D 4 HOH A 45 545 128 HOH HOH . 
D 4 HOH A 46 546 19 HOH HOH . 
D 4 HOH A 47 547 12 HOH HOH . 
D 4 HOH A 48 548 18 HOH HOH . 
D 4 HOH A 49 549 75 HOH HOH . 
D 4 HOH A 50 550 95 HOH HOH . 
D 4 HOH A 51 551 77 HOH HOH . 
D 4 HOH A 52 552 16 HOH HOH . 
D 4 HOH A 53 553 68 HOH HOH . 
D 4 HOH A 54 554 124 HOH HOH . 
D 4 HOH A 55 555 47 HOH HOH . 
D 4 HOH A 56 556 106 HOH HOH . 
D 4 HOH A 57 557 15 HOH HOH . 
D 4 HOH A 58 558 41 HOH HOH . 
D 4 HOH A 59 559 66 HOH HOH . 
D 4 HOH A 60 560 92 HOH HOH . 
D 4 HOH A 61 561 36 HOH HOH . 
D 4 HOH A 62 562 89 HOH HOH . 
D 4 HOH A 63 563 107 HOH HOH . 
D 4 HOH A 64 564 23 HOH HOH . 
D 4 HOH A 65 565 26 HOH HOH . 
D 4 HOH A 66 566 9 HOH HOH . 
D 4 HOH A 67 567 64 HOH HOH . 
D 4 HOH A 68 568 27 HOH HOH . 
D 4 HOH A 69 569 34 HOH HOH . 
D 4 HOH A 70 570 39 HOH HOH . 
D 4 HOH A 71 571 20 HOH HOH . 
D 4 HOH A 72 572 56 HOH HOH . 
D 4 HOH A 73 573 74 HOH HOH . 
D 4 HOH A 74 574 48 HOH HOH . 
D 4 HOH A 75 575 25 HOH HOH . 
D 4 HOH A 76 576 91 HOH HOH . 
D 4 HOH A 77 577 78 HOH HOH . 
D 4 HOH A 78 578 22 HOH HOH . 
D 4 HOH A 79 579 85 HOH HOH . 
D 4 HOH A 80 580 114 HOH HOH . 
D 4 HOH A 81 581 97 HOH HOH . 
D 4 HOH A 82 582 130 HOH HOH . 
D 4 HOH A 83 583 117 HOH HOH . 
D 4 HOH A 84 584 53 HOH HOH . 
D 4 HOH A 85 585 60 HOH HOH . 
D 4 HOH A 86 586 98 HOH HOH . 
D 4 HOH A 87 587 79 HOH HOH . 
D 4 HOH A 88 588 62 HOH HOH . 
D 4 HOH A 89 589 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 8VD . . . B 2 22.916 33.61 8.947 1 33.15 ? C3 8VD 401 A 1 
HETATM 2 N N1 8VD . . . B 2 19.925 30.348 12.067 1 46.37 ? N1 8VD 401 A 1 
HETATM 3 C C8 8VD . . . B 2 21.172 30.472 9.932 1 36.17 ? C8 8VD 401 A 1 
HETATM 4 C C5 8VD . . . B 2 21.431 32.261 11.642 1 44.86 ? C5 8VD 401 A 1 
HETATM 5 N N 8VD . . . B 2 22.638 32.384 9.485 1 32.27 ? N 8VD 401 A 1 
HETATM 6 C C 8VD . . . B 2 21.636 37.122 8.442 1 39.53 ? C 8VD 401 A 1 
HETATM 7 C C1 8VD . . . B 2 22.436 35.85 8.347 1 34.56 ? C1 8VD 401 A 1 
HETATM 8 C C2 8VD . . . B 2 22.059 34.703 9.056 1 34.76 ? C2 8VD 401 A 1 
HETATM 9 C C4 8VD . . . B 2 21.407 31.958 10.157 1 37.75 ? C4 8VD 401 A 1 
HETATM 10 C C6 8VD . . . B 2 20.141 31.792 12.299 1 50.33 ? C6 8VD 401 A 1 
HETATM 11 C C7 8VD . . . B 2 19.895 30.02 10.624 1 43.07 ? C7 8VD 401 A 1 
HETATM 12 C C9 8VD . . . B 2 24.27 34.832 7.592 1 26.97 ? C9 8VD 401 A 1 
HETATM 13 F F 8VD . . . B 2 22.399 38.186 8.566 1 42.3 ? F 8VD 401 A 1 
HETATM 14 F F1 8VD . . . B 2 20.935 37.351 7.345 1 38.22 ? F1 8VD 401 A 1 
HETATM 15 F F2 8VD . . . B 2 20.807 37.119 9.47 1 44.02 ? F2 8VD 401 A 1 
HETATM 16 N N2 8VD . . . B 2 24.04 33.679 8.22 1 30.32 ? N2 8VD 401 A 1 
HETATM 17 N N3 8VD . . . B 2 23.527 35.943 7.58 1 28.75 ? N3 8VD 401 A 1 
HETATM 18 H H7 8VD . . . B 2 20.617 29.79 12.557 1 55.74 ? H7 8VD 401 A 1 
HETATM 19 H H11 8VD . . . B 2 22.022 29.892 10.289 1 43.5 ? H11 8VD 401 A 1 
HETATM 20 H H10 8VD . . . B 2 21.127 30.249 8.867 1 43.5 ? H10 8VD 401 A 1 
HETATM 21 H H3 8VD . . . B 2 21.577 33.326 11.818 1 53.92 ? H3 8VD 401 A 1 
HETATM 22 H H4 8VD . . . B 2 22.289 31.791 12.119 1 53.92 ? H4 8VD 401 A 1 
HETATM 23 H H1 8VD . . . B 2 23.371 31.686 9.41 1 38.81 ? H1 8VD 401 A 1 
HETATM 24 H H 8VD . . . B 2 21.149 34.675 9.653 1 41.8 ? H 8VD 401 A 1 
HETATM 25 H H2 8VD . . . B 2 20.585 32.517 9.713 1 45.4 ? H2 8VD 401 A 1 
HETATM 26 H H6 8VD . . . B 2 19.282 32.346 11.923 1 60.49 ? H6 8VD 401 A 1 
HETATM 27 H H5 8VD . . . B 2 20.15 31.984 13.371 1 60.49 ? H5 8VD 401 A 1 
HETATM 28 H H8 8VD . . . B 2 19.743 28.948 10.503 1 51.78 ? H8 8VD 401 A 1 
HETATM 29 H H9 8VD . . . B 2 19.02 30.481 10.169 1 51.78 ? H9 8VD 401 A 1 
HETATM 30 H H12 8VD . . . B 2 25.189 34.871 7.009 1 32.46 ? H12 8VD 401 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#