data_7SER
#
_model_server_result.job_id            kkKx0XERw209r5ojWRcmyw 
_model_server_result.datetime_utc      '2025-07-08 00:09:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ser 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    7SER 
#
_exptl.entry_id    7SER 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.334 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7SER 
_cell.length_a            103.891 
_cell.length_b            138.305 
_cell.length_c            179.191 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7SER 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    'I 2 2' 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H15 N5 O3 S' 
_chem_comp.formula_weight    297.334 
_chem_comp.id                MTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTA sing 287 n n 
CS HCS1 MTA sing 288 n n 
CS HCS2 MTA sing 289 n n 
CS HCS3 MTA sing 290 n n 
S5' C5' MTA sing 291 n n 
C5' C4' MTA sing 292 n n 
C5' "H5'1" MTA sing 293 n n 
C5' "H5'2" MTA sing 294 n n 
C4' O4' MTA sing 295 n n 
C4' C3' MTA sing 296 n n 
C4' H4' MTA sing 297 n n 
O4' C1' MTA sing 298 n n 
C2' O2' MTA sing 299 n n 
C2' C3' MTA sing 300 n n 
C2' C1' MTA sing 301 n n 
C2' H2' MTA sing 302 n n 
O2' HO2' MTA sing 303 n n 
C3' O3' MTA sing 304 n n 
C3' H3' MTA sing 305 n n 
O3' H3T MTA sing 306 n n 
C1' N9 MTA sing 307 n n 
C1' H1' MTA sing 308 n n 
N9 C8 MTA sing 309 n y 
N9 C4 MTA sing 310 n y 
C8 N7 MTA doub 311 n y 
C8 H8 MTA sing 312 n n 
N7 C5 MTA sing 313 n y 
C5 C6 MTA sing 314 n y 
C5 C4 MTA doub 315 n y 
C6 N6 MTA sing 316 n n 
C6 N1 MTA doub 317 n y 
N6 H61 MTA sing 318 n n 
N6 H62 MTA sing 319 n n 
N1 C2 MTA sing 320 n y 
C2 N3 MTA doub 321 n y 
C2 H2 MTA sing 322 n n 
N3 C4 MTA sing 323 n y 
#
_atom_sites.entry_id                     7SER 
_atom_sites.fract_transf_matrix[1][1]    0.009625 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00723 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005581 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 97L A 1 801 801 97L LIG . 
D 4 MTA A 1 802 802 MTA MTA . 
E 5 HOH A 1 901 100 HOH HOH . 
E 5 HOH A 2 902 117 HOH HOH . 
E 5 HOH A 3 903 206 HOH HOH . 
E 5 HOH A 4 904 31 HOH HOH . 
E 5 HOH A 5 905 226 HOH HOH . 
E 5 HOH A 6 906 179 HOH HOH . 
E 5 HOH A 7 907 190 HOH HOH . 
E 5 HOH A 8 908 94 HOH HOH . 
E 5 HOH A 9 909 109 HOH HOH . 
E 5 HOH A 10 910 167 HOH HOH . 
E 5 HOH A 11 911 81 HOH HOH . 
E 5 HOH A 12 912 188 HOH HOH . 
E 5 HOH A 13 913 32 HOH HOH . 
E 5 HOH A 14 914 9 HOH HOH . 
E 5 HOH A 15 915 45 HOH HOH . 
E 5 HOH A 16 916 225 HOH HOH . 
E 5 HOH A 17 917 8 HOH HOH . 
E 5 HOH A 18 918 1 HOH HOH . 
E 5 HOH A 19 919 126 HOH HOH . 
E 5 HOH A 20 920 10 HOH HOH . 
E 5 HOH A 21 921 140 HOH HOH . 
E 5 HOH A 22 922 17 HOH HOH . 
E 5 HOH A 23 923 46 HOH HOH . 
E 5 HOH A 24 924 57 HOH HOH . 
E 5 HOH A 25 925 108 HOH HOH . 
E 5 HOH A 26 926 36 HOH HOH . 
E 5 HOH A 27 927 220 HOH HOH . 
E 5 HOH A 28 928 72 HOH HOH . 
E 5 HOH A 29 929 39 HOH HOH . 
E 5 HOH A 30 930 71 HOH HOH . 
E 5 HOH A 31 931 19 HOH HOH . 
E 5 HOH A 32 932 12 HOH HOH . 
E 5 HOH A 33 933 40 HOH HOH . 
E 5 HOH A 34 934 204 HOH HOH . 
E 5 HOH A 35 935 22 HOH HOH . 
E 5 HOH A 36 936 183 HOH HOH . 
E 5 HOH A 37 937 210 HOH HOH . 
E 5 HOH A 38 938 62 HOH HOH . 
E 5 HOH A 39 939 164 HOH HOH . 
E 5 HOH A 40 940 34 HOH HOH . 
E 5 HOH A 41 941 102 HOH HOH . 
E 5 HOH A 42 942 6 HOH HOH . 
E 5 HOH A 43 943 161 HOH HOH . 
E 5 HOH A 44 944 29 HOH HOH . 
E 5 HOH A 45 945 200 HOH HOH . 
E 5 HOH A 46 946 23 HOH HOH . 
E 5 HOH A 47 947 66 HOH HOH . 
E 5 HOH A 48 948 85 HOH HOH . 
E 5 HOH A 49 949 113 HOH HOH . 
E 5 HOH A 50 950 130 HOH HOH . 
E 5 HOH A 51 951 74 HOH HOH . 
E 5 HOH A 52 952 147 HOH HOH . 
E 5 HOH A 53 953 3 HOH HOH . 
E 5 HOH A 54 954 154 HOH HOH . 
E 5 HOH A 55 955 162 HOH HOH . 
E 5 HOH A 56 956 223 HOH HOH . 
E 5 HOH A 57 957 178 HOH HOH . 
E 5 HOH A 58 958 93 HOH HOH . 
E 5 HOH A 59 959 101 HOH HOH . 
E 5 HOH A 60 960 80 HOH HOH . 
E 5 HOH A 61 961 138 HOH HOH . 
E 5 HOH A 62 962 142 HOH HOH . 
E 5 HOH A 63 963 83 HOH HOH . 
E 5 HOH A 64 964 105 HOH HOH . 
E 5 HOH A 65 965 42 HOH HOH . 
E 5 HOH A 66 966 157 HOH HOH . 
E 5 HOH A 67 967 139 HOH HOH . 
E 5 HOH A 68 968 27 HOH HOH . 
E 5 HOH A 69 969 127 HOH HOH . 
E 5 HOH A 70 970 155 HOH HOH . 
E 5 HOH A 71 971 41 HOH HOH . 
E 5 HOH A 72 972 43 HOH HOH . 
E 5 HOH A 73 973 165 HOH HOH . 
E 5 HOH A 74 974 103 HOH HOH . 
E 5 HOH A 75 975 54 HOH HOH . 
E 5 HOH A 76 976 75 HOH HOH . 
E 5 HOH A 77 977 2 HOH HOH . 
E 5 HOH A 78 978 44 HOH HOH . 
E 5 HOH A 79 979 145 HOH HOH . 
E 5 HOH A 80 980 176 HOH HOH . 
E 5 HOH A 81 981 20 HOH HOH . 
E 5 HOH A 82 982 115 HOH HOH . 
E 5 HOH A 83 983 58 HOH HOH . 
E 5 HOH A 84 984 15 HOH HOH . 
E 5 HOH A 85 985 95 HOH HOH . 
E 5 HOH A 86 986 88 HOH HOH . 
E 5 HOH A 87 987 18 HOH HOH . 
E 5 HOH A 88 988 11 HOH HOH . 
E 5 HOH A 89 989 89 HOH HOH . 
E 5 HOH A 90 990 203 HOH HOH . 
E 5 HOH A 91 991 76 HOH HOH . 
E 5 HOH A 92 992 218 HOH HOH . 
E 5 HOH A 93 993 153 HOH HOH . 
E 5 HOH A 94 994 86 HOH HOH . 
E 5 HOH A 95 995 189 HOH HOH . 
E 5 HOH A 96 996 16 HOH HOH . 
E 5 HOH A 97 997 168 HOH HOH . 
E 5 HOH A 98 998 73 HOH HOH . 
E 5 HOH A 99 999 143 HOH HOH . 
E 5 HOH A 100 1000 185 HOH HOH . 
E 5 HOH A 101 1001 4 HOH HOH . 
E 5 HOH A 102 1002 24 HOH HOH . 
E 5 HOH A 103 1003 77 HOH HOH . 
E 5 HOH A 104 1004 99 HOH HOH . 
E 5 HOH A 105 1005 48 HOH HOH . 
E 5 HOH A 106 1006 146 HOH HOH . 
E 5 HOH A 107 1007 59 HOH HOH . 
E 5 HOH A 108 1008 159 HOH HOH . 
E 5 HOH A 109 1009 129 HOH HOH . 
E 5 HOH A 110 1010 53 HOH HOH . 
E 5 HOH A 111 1011 134 HOH HOH . 
E 5 HOH A 112 1012 121 HOH HOH . 
E 5 HOH A 113 1013 214 HOH HOH . 
E 5 HOH A 114 1014 186 HOH HOH . 
E 5 HOH A 115 1015 26 HOH HOH . 
E 5 HOH A 116 1016 107 HOH HOH . 
E 5 HOH A 117 1017 196 HOH HOH . 
E 5 HOH A 118 1018 128 HOH HOH . 
E 5 HOH A 119 1019 97 HOH HOH . 
E 5 HOH A 120 1020 50 HOH HOH . 
E 5 HOH A 121 1021 28 HOH HOH . 
E 5 HOH A 122 1022 132 HOH HOH . 
E 5 HOH A 123 1023 230 HOH HOH . 
E 5 HOH A 124 1024 67 HOH HOH . 
E 5 HOH A 125 1025 123 HOH HOH . 
E 5 HOH A 126 1026 208 HOH HOH . 
E 5 HOH A 127 1027 211 HOH HOH . 
E 5 HOH A 128 1028 65 HOH HOH . 
E 5 HOH A 129 1029 106 HOH HOH . 
E 5 HOH A 130 1030 120 HOH HOH . 
E 5 HOH A 131 1031 25 HOH HOH . 
E 5 HOH A 132 1032 135 HOH HOH . 
E 5 HOH A 133 1033 110 HOH HOH . 
E 5 HOH A 134 1034 60 HOH HOH . 
E 5 HOH A 135 1035 187 HOH HOH . 
E 5 HOH A 136 1036 5 HOH HOH . 
E 5 HOH A 137 1037 141 HOH HOH . 
E 5 HOH A 138 1038 169 HOH HOH . 
E 5 HOH A 139 1039 61 HOH HOH . 
E 5 HOH A 140 1040 144 HOH HOH . 
E 5 HOH A 141 1041 98 HOH HOH . 
E 5 HOH A 142 1042 68 HOH HOH . 
E 5 HOH A 143 1043 21 HOH HOH . 
E 5 HOH A 144 1044 151 HOH HOH . 
E 5 HOH A 145 1045 91 HOH HOH . 
E 5 HOH A 146 1046 221 HOH HOH . 
E 5 HOH A 147 1047 51 HOH HOH . 
E 5 HOH A 148 1048 195 HOH HOH . 
E 5 HOH A 149 1049 87 HOH HOH . 
E 5 HOH A 150 1050 33 HOH HOH . 
E 5 HOH A 151 1051 111 HOH HOH . 
E 5 HOH A 152 1052 79 HOH HOH . 
E 5 HOH A 153 1053 116 HOH HOH . 
E 5 HOH A 154 1054 170 HOH HOH . 
E 5 HOH A 155 1055 47 HOH HOH . 
E 5 HOH A 156 1056 191 HOH HOH . 
E 5 HOH A 157 1057 163 HOH HOH . 
E 5 HOH A 158 1058 198 HOH HOH . 
E 5 HOH A 159 1059 201 HOH HOH . 
E 5 HOH A 160 1060 181 HOH HOH . 
E 5 HOH A 161 1061 131 HOH HOH . 
E 5 HOH A 162 1062 112 HOH HOH . 
E 5 HOH A 163 1063 38 HOH HOH . 
E 5 HOH A 164 1064 7 HOH HOH . 
E 5 HOH A 165 1065 156 HOH HOH . 
E 5 HOH A 166 1066 30 HOH HOH . 
E 5 HOH A 167 1067 118 HOH HOH . 
E 5 HOH A 168 1068 175 HOH HOH . 
E 5 HOH A 169 1069 158 HOH HOH . 
E 5 HOH A 170 1070 177 HOH HOH . 
E 5 HOH A 171 1071 55 HOH HOH . 
E 5 HOH A 172 1072 136 HOH HOH . 
E 5 HOH A 173 1073 199 HOH HOH . 
E 5 HOH A 174 1074 49 HOH HOH . 
E 5 HOH A 175 1075 119 HOH HOH . 
E 5 HOH A 176 1076 207 HOH HOH . 
E 5 HOH A 177 1077 166 HOH HOH . 
E 5 HOH A 178 1078 227 HOH HOH . 
E 5 HOH A 179 1079 216 HOH HOH . 
E 5 HOH A 180 1080 228 HOH HOH . 
E 5 HOH A 181 1081 219 HOH HOH . 
E 5 HOH A 182 1082 171 HOH HOH . 
E 5 HOH A 183 1083 150 HOH HOH . 
E 5 HOH A 184 1084 182 HOH HOH . 
E 5 HOH A 185 1085 222 HOH HOH . 
E 5 HOH A 186 1086 172 HOH HOH . 
E 5 HOH A 187 1087 82 HOH HOH . 
E 5 HOH A 188 1088 205 HOH HOH . 
E 5 HOH A 189 1089 231 HOH HOH . 
E 5 HOH A 190 1090 212 HOH HOH . 
E 5 HOH A 191 1091 192 HOH HOH . 
E 5 HOH A 192 1092 224 HOH HOH . 
E 5 HOH A 193 1093 229 HOH HOH . 
E 5 HOH A 194 1094 184 HOH HOH . 
E 5 HOH A 195 1095 232 HOH HOH . 
E 5 HOH A 196 1096 125 HOH HOH . 
E 5 HOH A 197 1097 63 HOH HOH . 
E 5 HOH A 198 1098 174 HOH HOH . 
E 5 HOH A 199 1099 160 HOH HOH . 
E 5 HOH A 200 1100 56 HOH HOH . 
E 5 HOH A 201 1101 213 HOH HOH . 
F 5 HOH B 1 401 133 HOH HOH . 
F 5 HOH B 2 402 173 HOH HOH . 
F 5 HOH B 3 403 35 HOH HOH . 
F 5 HOH B 4 404 92 HOH HOH . 
F 5 HOH B 5 405 69 HOH HOH . 
F 5 HOH B 6 406 217 HOH HOH . 
F 5 HOH B 7 407 197 HOH HOH . 
F 5 HOH B 8 408 84 HOH HOH . 
F 5 HOH B 9 409 193 HOH HOH . 
F 5 HOH B 10 410 96 HOH HOH . 
F 5 HOH B 11 411 194 HOH HOH . 
F 5 HOH B 12 412 90 HOH HOH . 
F 5 HOH B 13 413 149 HOH HOH . 
F 5 HOH B 14 414 124 HOH HOH . 
F 5 HOH B 15 415 78 HOH HOH . 
F 5 HOH B 16 416 52 HOH HOH . 
F 5 HOH B 17 417 64 HOH HOH . 
F 5 HOH B 18 418 122 HOH HOH . 
F 5 HOH B 19 419 180 HOH HOH . 
F 5 HOH B 20 420 114 HOH HOH . 
F 5 HOH B 21 421 104 HOH HOH . 
F 5 HOH B 22 422 209 HOH HOH . 
F 5 HOH B 23 423 14 HOH HOH . 
F 5 HOH B 24 424 148 HOH HOH . 
F 5 HOH B 25 425 137 HOH HOH . 
F 5 HOH B 26 426 13 HOH HOH . 
F 5 HOH B 27 427 70 HOH HOH . 
F 5 HOH B 28 428 215 HOH HOH . 
F 5 HOH B 29 429 202 HOH HOH . 
F 5 HOH B 30 430 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTA . . . D 4 -30.576 -39.709 -6.846 1 38.78 ? CS MTA 802 A 1 
HETATM 2 S S5' MTA . . . D 4 -32.157 -40.526 -6.678 1 37.8 ? S5' MTA 802 A 1 
HETATM 3 C C5' MTA . . . D 4 -33.234 -39.116 -6.351 1 33.55 ? C5' MTA 802 A 1 
HETATM 4 C C4' MTA . . . D 4 -32.954 -38.292 -5.105 1 35.42 ? C4' MTA 802 A 1 
HETATM 5 O O4' MTA . . . D 4 -33.973 -37.272 -4.997 1 28.34 ? O4' MTA 802 A 1 
HETATM 6 C C2' MTA . . . D 4 -34.356 -38.727 -3.206 1 35.05 ? C2' MTA 802 A 1 
HETATM 7 O O2' MTA . . . D 4 -34.425 -38.872 -1.802 1 26.68 ? O2' MTA 802 A 1 
HETATM 8 C C3' MTA . . . D 4 -32.973 -39.059 -3.778 1 33.91 ? C3' MTA 802 A 1 
HETATM 9 O O3' MTA . . . D 4 -31.954 -38.612 -2.89 1 31.19 ? O3' MTA 802 A 1 
HETATM 10 C C1' MTA . . . D 4 -34.574 -37.307 -3.724 1 31.76 ? C1' MTA 802 A 1 
HETATM 11 N N9 MTA . . . D 4 -35.977 -36.947 -3.908 1 32.18 ? N9 MTA 802 A 1 
HETATM 12 C C8 MTA . . . D 4 -36.907 -37.621 -4.658 1 35.72 ? C8 MTA 802 A 1 
HETATM 13 N N7 MTA . . . D 4 -38.096 -37.069 -4.642 1 34.35 ? N7 MTA 802 A 1 
HETATM 14 C C5 MTA . . . D 4 -37.938 -35.935 -3.864 1 34.42 ? C5 MTA 802 A 1 
HETATM 15 C C6 MTA . . . D 4 -38.83 -34.909 -3.486 1 35.58 ? C6 MTA 802 A 1 
HETATM 16 N N6 MTA . . . D 4 -40.107 -34.856 -3.857 1 36.72 ? N6 MTA 802 A 1 
HETATM 17 N N1 MTA . . . D 4 -38.345 -33.922 -2.702 1 37.78 ? N1 MTA 802 A 1 
HETATM 18 C C2 MTA . . . D 4 -37.058 -33.971 -2.339 1 37.8 ? C2 MTA 802 A 1 
HETATM 19 N N3 MTA . . . D 4 -36.133 -34.884 -2.625 1 33.05 ? N3 MTA 802 A 1 
HETATM 20 C C4 MTA . . . D 4 -36.638 -35.854 -3.398 1 34.27 ? C4 MTA 802 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           20 
#