data_7SES # _model_server_result.job_id LEJO1rdFmPKgCXPS2Le-YQ _model_server_result.datetime_utc '2024-11-22 22:30:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ses # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 7SES # _exptl.entry_id 7SES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-METHYLTHIOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SES _cell.length_a 104.783 _cell.length_b 138.053 _cell.length_c 179.034 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SES _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N5 O3 S' _chem_comp.formula_weight 297.334 _chem_comp.id MTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-METHYLTHIOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CS S5' MTA sing 290 n n CS HCS1 MTA sing 291 n n CS HCS2 MTA sing 292 n n CS HCS3 MTA sing 293 n n S5' C5' MTA sing 294 n n C5' C4' MTA sing 295 n n C5' "H5'1" MTA sing 296 n n C5' "H5'2" MTA sing 297 n n C4' O4' MTA sing 298 n n C4' C3' MTA sing 299 n n C4' H4' MTA sing 300 n n O4' C1' MTA sing 301 n n C2' O2' MTA sing 302 n n C2' C3' MTA sing 303 n n C2' C1' MTA sing 304 n n C2' H2' MTA sing 305 n n O2' HO2' MTA sing 306 n n C3' O3' MTA sing 307 n n C3' H3' MTA sing 308 n n O3' H3T MTA sing 309 n n C1' N9 MTA sing 310 n n C1' H1' MTA sing 311 n n N9 C8 MTA sing 312 n y N9 C4 MTA sing 313 n y C8 N7 MTA doub 314 n y C8 H8 MTA sing 315 n n N7 C5 MTA sing 316 n y C5 C6 MTA sing 317 n y C5 C4 MTA doub 318 n y C6 N6 MTA sing 319 n n C6 N1 MTA doub 320 n y N6 H61 MTA sing 321 n n N6 H62 MTA sing 322 n n N1 C2 MTA sing 323 n y C2 N3 MTA doub 324 n y C2 H2 MTA sing 325 n n N3 C4 MTA sing 326 n y # _atom_sites.entry_id 7SES _atom_sites.fract_transf_matrix[1][1] 0.009544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 97X A 1 701 710 97X LIG . D 4 MTA A 1 702 711 MTA MTA . E 5 HOH A 1 801 25 HOH HOH . E 5 HOH A 2 802 86 HOH HOH . E 5 HOH A 3 803 82 HOH HOH . E 5 HOH A 4 804 1 HOH HOH . E 5 HOH A 5 805 77 HOH HOH . E 5 HOH A 6 806 22 HOH HOH . E 5 HOH A 7 807 66 HOH HOH . E 5 HOH A 8 808 24 HOH HOH . E 5 HOH A 9 809 104 HOH HOH . E 5 HOH A 10 810 23 HOH HOH . E 5 HOH A 11 811 89 HOH HOH . E 5 HOH A 12 812 3 HOH HOH . E 5 HOH A 13 813 61 HOH HOH . E 5 HOH A 14 814 19 HOH HOH . E 5 HOH A 15 815 109 HOH HOH . E 5 HOH A 16 816 7 HOH HOH . E 5 HOH A 17 817 11 HOH HOH . E 5 HOH A 18 818 107 HOH HOH . E 5 HOH A 19 819 35 HOH HOH . E 5 HOH A 20 820 57 HOH HOH . E 5 HOH A 21 821 14 HOH HOH . E 5 HOH A 22 822 8 HOH HOH . E 5 HOH A 23 823 32 HOH HOH . E 5 HOH A 24 824 34 HOH HOH . E 5 HOH A 25 825 17 HOH HOH . E 5 HOH A 26 826 30 HOH HOH . E 5 HOH A 27 827 31 HOH HOH . E 5 HOH A 28 828 28 HOH HOH . E 5 HOH A 29 829 69 HOH HOH . E 5 HOH A 30 830 60 HOH HOH . E 5 HOH A 31 831 85 HOH HOH . E 5 HOH A 32 832 50 HOH HOH . E 5 HOH A 33 833 72 HOH HOH . E 5 HOH A 34 834 36 HOH HOH . E 5 HOH A 35 835 110 HOH HOH . E 5 HOH A 36 836 97 HOH HOH . E 5 HOH A 37 837 18 HOH HOH . E 5 HOH A 38 838 108 HOH HOH . E 5 HOH A 39 839 84 HOH HOH . F 5 HOH B 1 401 16 HOH HOH . F 5 HOH B 2 402 93 HOH HOH . F 5 HOH B 3 403 96 HOH HOH . F 5 HOH B 4 404 78 HOH HOH . F 5 HOH B 5 405 71 HOH HOH . F 5 HOH B 6 406 92 HOH HOH . F 5 HOH B 7 407 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CS MTA . . . D 4 -31.148 -39.438 -7.138 1 45.73 ? CS MTA 702 A 1 HETATM 2 S S5' MTA . . . D 4 -32.485 -40.53 -6.662 1 44.71 ? S5' MTA 702 A 1 HETATM 3 C C5' MTA . . . D 4 -33.78 -39.325 -6.271 1 41.95 ? C5' MTA 702 A 1 HETATM 4 C C4' MTA . . . D 4 -33.438 -38.387 -5.137 1 39.44 ? C4' MTA 702 A 1 HETATM 5 O O4' MTA . . . D 4 -34.459 -37.362 -5.061 1 42.48 ? O4' MTA 702 A 1 HETATM 6 C C2' MTA . . . D 4 -34.847 -38.805 -3.286 1 45.28 ? C2' MTA 702 A 1 HETATM 7 O O2' MTA . . . D 4 -35.056 -38.937 -1.897 1 47.83 ? O2' MTA 702 A 1 HETATM 8 C C3' MTA . . . D 4 -33.407 -39.034 -3.752 1 39.87 ? C3' MTA 702 A 1 HETATM 9 O O3' MTA . . . D 4 -32.503 -38.32 -2.919 1 47.67 ? O3' MTA 702 A 1 HETATM 10 C C1' MTA . . . D 4 -35.052 -37.38 -3.783 1 43.84 ? C1' MTA 702 A 1 HETATM 11 N N9 MTA . . . D 4 -36.453 -37.008 -3.935 1 41.55 ? N9 MTA 702 A 1 HETATM 12 C C8 MTA . . . D 4 -37.411 -37.715 -4.617 1 36.7 ? C8 MTA 702 A 1 HETATM 13 N N7 MTA . . . D 4 -38.589 -37.145 -4.597 1 40.98 ? N7 MTA 702 A 1 HETATM 14 C C5 MTA . . . D 4 -38.4 -35.989 -3.854 1 39.24 ? C5 MTA 702 A 1 HETATM 15 C C6 MTA . . . D 4 -39.277 -34.956 -3.475 1 44.7 ? C6 MTA 702 A 1 HETATM 16 N N6 MTA . . . D 4 -40.563 -34.92 -3.81 1 49.74 ? N6 MTA 702 A 1 HETATM 17 N N1 MTA . . . D 4 -38.766 -33.943 -2.734 1 44.05 ? N1 MTA 702 A 1 HETATM 18 C C2 MTA . . . D 4 -37.469 -33.985 -2.405 1 47.04 ? C2 MTA 702 A 1 HETATM 19 N N3 MTA . . . D 4 -36.553 -34.903 -2.703 1 44.95 ? N3 MTA 702 A 1 HETATM 20 C C4 MTA . . . D 4 -37.085 -35.892 -3.439 1 38.4 ? C4 MTA 702 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #