data_7SF4 # _model_server_result.job_id MpgHfigNGMKpXUUAz14m8w _model_server_result.datetime_utc '2024-12-01 05:04:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 7SF4 # _exptl.entry_id 7SF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SF4 _cell.length_a 68.98 _cell.length_b 71.131 _cell.length_c 144.557 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,S 1 1 B,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 L N N ? 3 O N N ? 3 Q N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7SF4 _atom_sites.fract_transf_matrix[1][1] 0.014497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XDK A 1 401 401 XDK STI . D 3 GOL A 1 402 403 GOL GOL . E 3 GOL A 1 403 404 GOL GOL . F 3 GOL A 1 404 405 GOL GOL . G 4 EDO A 1 405 406 EDO LIG . H 4 EDO A 1 406 407 EDO LIG . I 4 EDO A 1 407 408 EDO LIG . J 4 EDO A 1 408 409 EDO LIG . K 4 EDO A 1 409 410 EDO LIG . L 3 GOL A 1 410 411 GOL GOL . M 4 EDO A 1 411 649 EDO LIG . N 2 XDK B 1 401 401 XDK STI . O 3 GOL B 1 402 402 GOL GOL . P 4 EDO B 1 403 403 EDO LIG . Q 3 GOL B 1 404 404 GOL GOL . R 4 EDO B 1 405 405 EDO LIG . S 5 HOH A 1 501 476 HOH HOH . S 5 HOH A 2 502 553 HOH HOH . S 5 HOH A 3 503 498 HOH HOH . S 5 HOH A 4 504 441 HOH HOH . S 5 HOH A 5 505 505 HOH HOH . S 5 HOH A 6 506 527 HOH HOH . S 5 HOH A 7 507 612 HOH HOH . S 5 HOH A 8 508 565 HOH HOH . S 5 HOH A 9 509 442 HOH HOH . S 5 HOH A 10 510 647 HOH HOH . S 5 HOH A 11 511 423 HOH HOH . S 5 HOH A 12 512 471 HOH HOH . S 5 HOH A 13 513 469 HOH HOH . S 5 HOH A 14 514 418 HOH HOH . S 5 HOH A 15 515 602 HOH HOH . S 5 HOH A 16 516 406 HOH HOH . S 5 HOH A 17 517 579 HOH HOH . S 5 HOH A 18 518 436 HOH HOH . S 5 HOH A 19 519 567 HOH HOH . S 5 HOH A 20 520 472 HOH HOH . S 5 HOH A 21 521 456 HOH HOH . S 5 HOH A 22 522 507 HOH HOH . S 5 HOH A 23 523 581 HOH HOH . S 5 HOH A 24 524 499 HOH HOH . S 5 HOH A 25 525 413 HOH HOH . S 5 HOH A 26 526 421 HOH HOH . S 5 HOH A 27 527 514 HOH HOH . S 5 HOH A 28 528 465 HOH HOH . S 5 HOH A 29 529 458 HOH HOH . S 5 HOH A 30 530 457 HOH HOH . S 5 HOH A 31 531 541 HOH HOH . S 5 HOH A 32 532 529 HOH HOH . S 5 HOH A 33 533 426 HOH HOH . S 5 HOH A 34 534 517 HOH HOH . S 5 HOH A 35 535 530 HOH HOH . S 5 HOH A 36 536 473 HOH HOH . S 5 HOH A 37 537 445 HOH HOH . S 5 HOH A 38 538 531 HOH HOH . S 5 HOH A 39 539 450 HOH HOH . S 5 HOH A 40 540 599 HOH HOH . S 5 HOH A 41 541 444 HOH HOH . S 5 HOH A 42 542 475 HOH HOH . S 5 HOH A 43 543 548 HOH HOH . S 5 HOH A 44 544 520 HOH HOH . S 5 HOH A 45 545 468 HOH HOH . S 5 HOH A 46 546 412 HOH HOH . S 5 HOH A 47 547 424 HOH HOH . S 5 HOH A 48 548 452 HOH HOH . S 5 HOH A 49 549 463 HOH HOH . S 5 HOH A 50 550 524 HOH HOH . S 5 HOH A 51 551 536 HOH HOH . S 5 HOH A 52 552 416 HOH HOH . S 5 HOH A 53 553 543 HOH HOH . S 5 HOH A 54 554 446 HOH HOH . S 5 HOH A 55 555 593 HOH HOH . S 5 HOH A 56 556 459 HOH HOH . S 5 HOH A 57 557 511 HOH HOH . S 5 HOH A 58 558 494 HOH HOH . S 5 HOH A 59 559 504 HOH HOH . S 5 HOH A 60 560 439 HOH HOH . S 5 HOH A 61 561 464 HOH HOH . S 5 HOH A 62 562 1 HOH HOH . S 5 HOH A 63 563 639 HOH HOH . S 5 HOH A 64 564 497 HOH HOH . S 5 HOH A 65 565 431 HOH HOH . S 5 HOH A 66 566 485 HOH HOH . S 5 HOH A 67 567 438 HOH HOH . S 5 HOH A 68 568 641 HOH HOH . S 5 HOH A 69 569 561 HOH HOH . S 5 HOH A 70 570 440 HOH HOH . S 5 HOH A 71 571 408 HOH HOH . S 5 HOH A 72 572 642 HOH HOH . S 5 HOH A 73 573 648 HOH HOH . S 5 HOH A 74 574 496 HOH HOH . S 5 HOH A 75 575 640 HOH HOH . S 5 HOH A 76 576 644 HOH HOH . S 5 HOH A 77 577 2 HOH HOH . S 5 HOH A 78 578 557 HOH HOH . S 5 HOH A 79 579 551 HOH HOH . S 5 HOH A 80 580 591 HOH HOH . S 5 HOH A 81 581 605 HOH HOH . S 5 HOH A 82 582 487 HOH HOH . S 5 HOH A 83 583 532 HOH HOH . S 5 HOH A 84 584 550 HOH HOH . S 5 HOH A 85 585 638 HOH HOH . S 5 HOH A 86 586 492 HOH HOH . S 5 HOH A 87 587 637 HOH HOH . S 5 HOH A 88 588 3 HOH HOH . S 5 HOH A 89 589 643 HOH HOH . T 5 HOH B 1 501 610 HOH HOH . T 5 HOH B 2 502 410 HOH HOH . T 5 HOH B 3 503 467 HOH HOH . T 5 HOH B 4 504 549 HOH HOH . T 5 HOH B 5 505 417 HOH HOH . T 5 HOH B 6 506 509 HOH HOH . T 5 HOH B 7 507 493 HOH HOH . T 5 HOH B 8 508 425 HOH HOH . T 5 HOH B 9 509 434 HOH HOH . T 5 HOH B 10 510 466 HOH HOH . T 5 HOH B 11 511 427 HOH HOH . T 5 HOH B 12 512 429 HOH HOH . T 5 HOH B 13 513 462 HOH HOH . T 5 HOH B 14 514 563 HOH HOH . T 5 HOH B 15 515 628 HOH HOH . T 5 HOH B 16 516 420 HOH HOH . T 5 HOH B 17 517 415 HOH HOH . T 5 HOH B 18 518 484 HOH HOH . T 5 HOH B 19 519 443 HOH HOH . T 5 HOH B 20 520 449 HOH HOH . T 5 HOH B 21 521 571 HOH HOH . T 5 HOH B 22 522 432 HOH HOH . T 5 HOH B 23 523 537 HOH HOH . T 5 HOH B 24 524 447 HOH HOH . T 5 HOH B 25 525 414 HOH HOH . T 5 HOH B 26 526 428 HOH HOH . T 5 HOH B 27 527 405 HOH HOH . T 5 HOH B 28 528 422 HOH HOH . T 5 HOH B 29 529 454 HOH HOH . T 5 HOH B 30 530 451 HOH HOH . T 5 HOH B 31 531 525 HOH HOH . T 5 HOH B 32 532 478 HOH HOH . T 5 HOH B 33 533 470 HOH HOH . T 5 HOH B 34 534 535 HOH HOH . T 5 HOH B 35 535 411 HOH HOH . T 5 HOH B 36 536 617 HOH HOH . T 5 HOH B 37 537 552 HOH HOH . T 5 HOH B 38 538 474 HOH HOH . T 5 HOH B 39 539 435 HOH HOH . T 5 HOH B 40 540 483 HOH HOH . T 5 HOH B 41 541 419 HOH HOH . T 5 HOH B 42 542 533 HOH HOH . T 5 HOH B 43 543 592 HOH HOH . T 5 HOH B 44 544 453 HOH HOH . T 5 HOH B 45 545 580 HOH HOH . T 5 HOH B 46 546 490 HOH HOH . T 5 HOH B 47 547 547 HOH HOH . T 5 HOH B 48 548 587 HOH HOH . T 5 HOH B 49 549 409 HOH HOH . T 5 HOH B 50 550 528 HOH HOH . T 5 HOH B 51 551 576 HOH HOH . T 5 HOH B 52 552 589 HOH HOH . T 5 HOH B 53 553 559 HOH HOH . T 5 HOH B 54 554 569 HOH HOH . T 5 HOH B 55 555 455 HOH HOH . T 5 HOH B 56 556 489 HOH HOH . T 5 HOH B 57 557 407 HOH HOH . T 5 HOH B 58 558 577 HOH HOH . T 5 HOH B 59 559 522 HOH HOH . T 5 HOH B 60 560 461 HOH HOH . T 5 HOH B 61 561 542 HOH HOH . T 5 HOH B 62 562 608 HOH HOH . T 5 HOH B 63 563 448 HOH HOH . T 5 HOH B 64 564 437 HOH HOH . T 5 HOH B 65 565 584 HOH HOH . T 5 HOH B 66 566 510 HOH HOH . T 5 HOH B 67 567 477 HOH HOH . T 5 HOH B 68 568 460 HOH HOH . T 5 HOH B 69 569 554 HOH HOH . T 5 HOH B 70 570 519 HOH HOH . T 5 HOH B 71 571 500 HOH HOH . T 5 HOH B 72 572 632 HOH HOH . T 5 HOH B 73 573 601 HOH HOH . T 5 HOH B 74 574 516 HOH HOH . T 5 HOH B 75 575 539 HOH HOH . T 5 HOH B 76 576 433 HOH HOH . T 5 HOH B 77 577 564 HOH HOH . T 5 HOH B 78 578 603 HOH HOH . T 5 HOH B 79 579 645 HOH HOH . T 5 HOH B 80 580 578 HOH HOH . T 5 HOH B 81 581 430 HOH HOH . T 5 HOH B 82 582 521 HOH HOH . T 5 HOH B 83 583 646 HOH HOH . T 5 HOH B 84 584 479 HOH HOH . T 5 HOH B 85 585 636 HOH HOH . T 5 HOH B 86 586 595 HOH HOH . T 5 HOH B 87 587 624 HOH HOH . T 5 HOH B 88 588 626 HOH HOH . T 5 HOH B 89 589 574 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -28.181 38.045 -19.571 1 34.15 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . E 3 -29.5 38.354 -19.211 1 38.61 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . E 3 -27.769 36.768 -18.845 1 34.85 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . E 3 -28.017 36.936 -17.473 1 36.19 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . E 3 -26.289 36.439 -19.033 1 35.54 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . E 3 -26.005 35.252 -18.339 1 33.96 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #