data_7SFB # _model_server_result.job_id r8cMhA5KTNFwlYg_OvZnZg _model_server_result.datetime_utc '2025-07-07 09:45:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7SFB # _exptl.entry_id 7SFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzyl (1R,2S,5S)-2-({(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}carbamoyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-3-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SFB _cell.length_a 45.054 _cell.length_b 63.91 _cell.length_c 105.77 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 63.91 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C18 _struct_conn.ptnr2_label_comp_id 90U _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 90U _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.727 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H32 N4 O6' _chem_comp.formula_weight 472.534 _chem_comp.id 90U _chem_comp.mon_nstd_flag . _chem_comp.name 'benzyl (1R,2S,5S)-2-({(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}carbamoyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-3-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C19 90U sing 1 n n C19 O5 90U doub 2 n n C19 C18 90U sing 3 n n O4 C18 90U sing 4 n n C18 C17 90U sing 5 n n C7 C5 90U sing 6 n n C17 N2 90U sing 7 n n C17 C20 90U sing 8 n n N2 C1 90U sing 9 n n C3 C5 90U sing 10 n n C3 C4 90U sing 11 n n C3 C2 90U sing 12 n n C20 C21 90U sing 13 n n C5 C4 90U sing 14 n n C5 C6 90U sing 15 n n C1 O1 90U doub 16 n n C1 C2 90U sing 17 n n C4 C8 90U sing 18 n n C2 N1 90U sing 19 n n C21 C22 90U sing 20 n n C21 C24 90U sing 21 n n C22 C23 90U sing 22 n n C8 N1 90U sing 23 n n N1 C9 90U sing 24 n n C24 O6 90U doub 25 n n C24 N4 90U sing 26 n n C23 N4 90U sing 27 n n C13 C12 90U doub 28 n y C13 C14 90U sing 29 n y O3 C9 90U doub 30 n n C9 O2 90U sing 31 n n C12 C11 90U sing 32 n y C14 C15 90U doub 33 n y O2 C10 90U sing 34 n n C11 C10 90U sing 35 n n C11 C16 90U doub 36 n y C15 C16 90U sing 37 n y N3 H1 90U sing 38 n n N3 H2 90U sing 39 n n C4 H3 90U sing 40 n n C6 H4 90U sing 41 n n C6 H5 90U sing 42 n n C6 H6 90U sing 43 n n C7 H7 90U sing 44 n n C7 H8 90U sing 45 n n C7 H9 90U sing 46 n n C8 H10 90U sing 47 n n C8 H11 90U sing 48 n n C10 H12 90U sing 49 n n C10 H13 90U sing 50 n n C13 H14 90U sing 51 n n C15 H15 90U sing 52 n n C17 H16 90U sing 53 n n C20 H17 90U sing 54 n n C20 H18 90U sing 55 n n C21 H19 90U sing 56 n n C22 H20 90U sing 57 n n C22 H21 90U sing 58 n n C2 H22 90U sing 59 n n C3 H23 90U sing 60 n n C12 H24 90U sing 61 n n C14 H25 90U sing 62 n n C16 H26 90U sing 63 n n N2 H27 90U sing 64 n n C18 H28 90U sing 65 n n O4 H29 90U sing 66 n n C23 H30 90U sing 67 n n C23 H31 90U sing 68 n n N4 H32 90U sing 69 n n # _atom_sites.entry_id 7SFB _atom_sites.fract_transf_matrix[1][1] 0.022196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 90U A 1 401 401 90U LIG . C 3 PGE A 1 402 402 PGE PGE . D 4 PEG A 1 403 403 PEG PEG . E 5 HOH A 1 501 199 HOH HOH . E 5 HOH A 2 502 211 HOH HOH . E 5 HOH A 3 503 62 HOH HOH . E 5 HOH A 4 504 224 HOH HOH . E 5 HOH A 5 505 180 HOH HOH . E 5 HOH A 6 506 29 HOH HOH . E 5 HOH A 7 507 44 HOH HOH . E 5 HOH A 8 508 201 HOH HOH . E 5 HOH A 9 509 84 HOH HOH . E 5 HOH A 10 510 25 HOH HOH . E 5 HOH A 11 511 64 HOH HOH . E 5 HOH A 12 512 184 HOH HOH . E 5 HOH A 13 513 63 HOH HOH . E 5 HOH A 14 514 41 HOH HOH . E 5 HOH A 15 515 6 HOH HOH . E 5 HOH A 16 516 7 HOH HOH . E 5 HOH A 17 517 217 HOH HOH . E 5 HOH A 18 518 195 HOH HOH . E 5 HOH A 19 519 13 HOH HOH . E 5 HOH A 20 520 197 HOH HOH . E 5 HOH A 21 521 17 HOH HOH . E 5 HOH A 22 522 21 HOH HOH . E 5 HOH A 23 523 1 HOH HOH . E 5 HOH A 24 524 32 HOH HOH . E 5 HOH A 25 525 28 HOH HOH . E 5 HOH A 26 526 18 HOH HOH . E 5 HOH A 27 527 79 HOH HOH . E 5 HOH A 28 528 26 HOH HOH . E 5 HOH A 29 529 221 HOH HOH . E 5 HOH A 30 530 30 HOH HOH . E 5 HOH A 31 531 78 HOH HOH . E 5 HOH A 32 532 35 HOH HOH . E 5 HOH A 33 533 179 HOH HOH . E 5 HOH A 34 534 110 HOH HOH . E 5 HOH A 35 535 177 HOH HOH . E 5 HOH A 36 536 174 HOH HOH . E 5 HOH A 37 537 19 HOH HOH . E 5 HOH A 38 538 226 HOH HOH . E 5 HOH A 39 539 176 HOH HOH . E 5 HOH A 40 540 36 HOH HOH . E 5 HOH A 41 541 9 HOH HOH . E 5 HOH A 42 542 76 HOH HOH . E 5 HOH A 43 543 52 HOH HOH . E 5 HOH A 44 544 60 HOH HOH . E 5 HOH A 45 545 182 HOH HOH . E 5 HOH A 46 546 33 HOH HOH . E 5 HOH A 47 547 189 HOH HOH . E 5 HOH A 48 548 74 HOH HOH . E 5 HOH A 49 549 119 HOH HOH . E 5 HOH A 50 550 38 HOH HOH . E 5 HOH A 51 551 227 HOH HOH . E 5 HOH A 52 552 65 HOH HOH . E 5 HOH A 53 553 27 HOH HOH . E 5 HOH A 54 554 75 HOH HOH . E 5 HOH A 55 555 102 HOH HOH . E 5 HOH A 56 556 105 HOH HOH . E 5 HOH A 57 557 16 HOH HOH . E 5 HOH A 58 558 56 HOH HOH . E 5 HOH A 59 559 39 HOH HOH . E 5 HOH A 60 560 47 HOH HOH . E 5 HOH A 61 561 68 HOH HOH . E 5 HOH A 62 562 14 HOH HOH . E 5 HOH A 63 563 42 HOH HOH . E 5 HOH A 64 564 208 HOH HOH . E 5 HOH A 65 565 117 HOH HOH . E 5 HOH A 66 566 40 HOH HOH . E 5 HOH A 67 567 175 HOH HOH . E 5 HOH A 68 568 54 HOH HOH . E 5 HOH A 69 569 12 HOH HOH . E 5 HOH A 70 570 198 HOH HOH . E 5 HOH A 71 571 34 HOH HOH . E 5 HOH A 72 572 170 HOH HOH . E 5 HOH A 73 573 55 HOH HOH . E 5 HOH A 74 574 15 HOH HOH . E 5 HOH A 75 575 24 HOH HOH . E 5 HOH A 76 576 204 HOH HOH . E 5 HOH A 77 577 51 HOH HOH . E 5 HOH A 78 578 22 HOH HOH . E 5 HOH A 79 579 8 HOH HOH . E 5 HOH A 80 580 20 HOH HOH . E 5 HOH A 81 581 216 HOH HOH . E 5 HOH A 82 582 46 HOH HOH . E 5 HOH A 83 583 108 HOH HOH . E 5 HOH A 84 584 91 HOH HOH . E 5 HOH A 85 585 81 HOH HOH . E 5 HOH A 86 586 202 HOH HOH . E 5 HOH A 87 587 37 HOH HOH . E 5 HOH A 88 588 183 HOH HOH . E 5 HOH A 89 589 70 HOH HOH . E 5 HOH A 90 590 207 HOH HOH . E 5 HOH A 91 591 191 HOH HOH . E 5 HOH A 92 592 228 HOH HOH . E 5 HOH A 93 593 209 HOH HOH . E 5 HOH A 94 594 214 HOH HOH . E 5 HOH A 95 595 130 HOH HOH . E 5 HOH A 96 596 124 HOH HOH . E 5 HOH A 97 597 219 HOH HOH . E 5 HOH A 98 598 185 HOH HOH . E 5 HOH A 99 599 213 HOH HOH . E 5 HOH A 100 600 222 HOH HOH . E 5 HOH A 101 601 220 HOH HOH . E 5 HOH A 102 602 210 HOH HOH . E 5 HOH A 103 603 168 HOH HOH . E 5 HOH A 104 604 5 HOH HOH . E 5 HOH A 105 605 215 HOH HOH . E 5 HOH A 106 606 101 HOH HOH . E 5 HOH A 107 607 203 HOH HOH . E 5 HOH A 108 608 45 HOH HOH . E 5 HOH A 109 609 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 90U . . . B 2 -19.374 16.186 -25.52 1 35.41 ? N1 90U 401 A 1 HETATM 2 N N3 90U . . . B 2 -18.867 20.895 -31.554 1 46.59 1 N3 90U 401 A 1 HETATM 3 C C4 90U . . . B 2 -20.511 14.69 -26.93 1 36.04 ? C4 90U 401 A 1 HETATM 4 C C5 90U . . . B 2 -19.326 13.902 -27.41 1 34.95 ? C5 90U 401 A 1 HETATM 5 C C6 90U . . . B 2 -18.412 13.313 -26.348 1 35.62 ? C6 90U 401 A 1 HETATM 6 C C7 90U . . . B 2 -19.486 13.007 -28.624 1 38.36 ? C7 90U 401 A 1 HETATM 7 C C8 90U . . . B 2 -20.553 15.314 -25.55 1 37.19 ? C8 90U 401 A 1 HETATM 8 C C10 90U . . . B 2 -19.789 17.702 -22.384 1 47.83 ? C10 90U 401 A 1 HETATM 9 C C13 90U . . . B 2 -21.626 20.151 -24.622 1 56.63 ? C13 90U 401 A 1 HETATM 10 C C15 90U . . . B 2 -20.527 21.377 -22.89 1 56.11 ? C15 90U 401 A 1 HETATM 11 C C17 90U . . . B 2 -17.75 19.706 -28.357 1 37.23 ? C17 90U 401 A 1 HETATM 12 C C20 90U . . . B 2 -16.721 20.561 -27.608 1 34.79 ? C20 90U 401 A 1 HETATM 13 C C21 90U . . . B 2 -17.126 20.794 -26.162 1 34.86 ? C21 90U 401 A 1 HETATM 14 C C22 90U . . . B 2 -18.269 21.79 -25.969 1 34.2 ? C22 90U 401 A 1 HETATM 15 C C24 90U . . . B 2 -16.003 21.335 -25.298 1 36.97 ? C24 90U 401 A 1 HETATM 16 O O1 90U . . . B 2 -19.925 18.387 -27.125 1 33.92 ? O1 90U 401 A 1 HETATM 17 C C1 90U . . . B 2 -18.857 17.787 -27.269 1 38.5 ? C1 90U 401 A 1 HETATM 18 C C2 90U . . . B 2 -18.694 16.344 -26.802 1 34.17 ? C2 90U 401 A 1 HETATM 19 C C3 90U . . . B 2 -19.407 15.376 -27.723 1 32.84 ? C3 90U 401 A 1 HETATM 20 C C9 90U . . . B 2 -18.934 16.864 -24.442 1 38.48 ? C9 90U 401 A 1 HETATM 21 O O2 90U . . . B 2 -19.74 16.648 -23.387 1 40.97 ? O2 90U 401 A 1 HETATM 22 C C11 90U . . . B 2 -20.324 18.976 -22.964 1 49.37 ? C11 90U 401 A 1 HETATM 23 C C12 90U . . . B 2 -21.146 18.964 -24.082 1 47.12 ? C12 90U 401 A 1 HETATM 24 C C14 90U . . . B 2 -21.319 21.359 -24.023 1 56.35 ? C14 90U 401 A 1 HETATM 25 C C16 90U . . . B 2 -20.023 20.192 -22.365 1 55.75 ? C16 90U 401 A 1 HETATM 26 O O3 90U . . . B 2 -17.941 17.577 -24.454 1 31.88 ? O3 90U 401 A 1 HETATM 27 N N2 90U . . . B 2 -17.772 18.343 -27.803 1 33.85 ? N2 90U 401 A 1 HETATM 28 C C18 90U . . . B 2 -17.544 19.574 -29.864 1 36.36 ? C18 90U 401 A 1 HETATM 29 O O4 90U . . . B 2 -18.497 18.638 -30.378 1 35.4 ? O4 90U 401 A 1 HETATM 30 C C19 90U . . . B 2 -17.807 20.893 -30.557 1 39.45 ? C19 90U 401 A 1 HETATM 31 O O5 90U . . . B 2 -17.166 21.867 -30.306 1 38.16 ? O5 90U 401 A 1 HETATM 32 C C23 90U . . . B 2 -17.871 22.646 -24.773 1 36.24 ? C23 90U 401 A 1 HETATM 33 N N4 90U . . . B 2 -16.447 22.391 -24.619 1 38.05 ? N4 90U 401 A 1 HETATM 34 O O6 90U . . . B 2 -14.867 20.852 -25.197 1 35.55 ? O6 90U 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #