data_7SG1 # _model_server_result.job_id GhmHaaBRfZ7oVfyEtZNAXg _model_server_result.datetime_utc '2024-11-17 19:26:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sg1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":201}' # _entry.id 7SG1 # _exptl.entry_id 7SG1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.76 _cell.angle_gamma 90 _cell.entry_id 7SG1 _cell.length_a 137.602 _cell.length_b 75.558 _cell.length_c 216.804 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SG1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L,M,Q 1 1 C,D,H,I,J,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 109 A CYS 107 1_555 A SG CYS 165 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 B SG CYS 25 B CYS 15 1_555 B SG CYS 89 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 127 B CYS 117 1_555 B SG CYS 183 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 C SG CYS 109 F CYS 107 1_555 C SG CYS 165 F CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 D SG CYS 25 G CYS 15 1_555 D SG CYS 89 G CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 D SG CYS 127 G CYS 117 1_555 D SG CYS 183 G CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 E SG CYS 22 D CYS 23 1_555 E SG CYS 88 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 132 D CYS 151 1_555 E SG CYS 182 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 E SG CYS 157 D CYS 176 1_555 F SG CYS 186 E CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 F SG CYS 37 E CYS 23 1_555 F SG CYS 107 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 F SG CYS 160 E CYS 158 1_555 F SG CYS 225 E CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf12 I SG CYS 22 I CYS 23 1_555 I SG CYS 88 I CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 I SG CYS 157 I CYS 176 1_555 J SG CYS 186 J CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? disulf ? disulf14 J SG CYS 37 J CYS 23 1_555 J SG CYS 107 J CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 J SG CYS 160 J CYS 158 1_555 J SG CYS 225 J CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 120 A ASN 118 1_555 K C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale2 C ND2 ASN 120 F ASN 118 1_555 N C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A OE2 GLU 87 A GLU 85 1_555 M CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc2 M CA CA . A CA 203 1_555 C OE1 GLU 87 F GLU 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.163 ? metalc ? metalc3 M CA CA . A CA 203 1_555 C OE2 GLU 87 F GLU 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc4 F OD1 ASP 25 E ASP 11 1_555 Q CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc5 F O ILE 26 E ILE 12 1_555 Q CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc6 F OG SER 233 E SER 231 1_555 Q CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc7 F OD1 ASP 236 E ASP 234 1_555 Q CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc8 F OD2 ASP 236 E ASP 234 1_555 Q CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 244 n n C1 O1 NAG sing 245 n n C1 O5 NAG sing 246 n n C1 H1 NAG sing 247 n n C2 C3 NAG sing 248 n n C2 N2 NAG sing 249 n n C2 H2 NAG sing 250 n n C3 C4 NAG sing 251 n n C3 O3 NAG sing 252 n n C3 H3 NAG sing 253 n n C4 C5 NAG sing 254 n n C4 O4 NAG sing 255 n n C4 H4 NAG sing 256 n n C5 C6 NAG sing 257 n n C5 O5 NAG sing 258 n n C5 H5 NAG sing 259 n n C6 O6 NAG sing 260 n n C6 H61 NAG sing 261 n n C6 H62 NAG sing 262 n n C7 C8 NAG sing 263 n n C7 N2 NAG sing 264 n n C7 O7 NAG doub 265 n n C8 H81 NAG sing 266 n n C8 H82 NAG sing 267 n n C8 H83 NAG sing 268 n n N2 HN2 NAG sing 269 n n O1 HO1 NAG sing 270 n n O3 HO3 NAG sing 271 n n O4 HO4 NAG sing 272 n n O6 HO6 NAG sing 273 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7SG1 _atom_sites.fract_transf_matrix[1][1] 0.007267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001779 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 NAG A 1 201 201 NAG NAG . L 7 EDO A 1 202 202 EDO EDO . M 8 CA A 1 203 2 CA CA . N 6 NAG F 1 201 201 NAG NAG . O 7 EDO F 1 202 202 EDO EDO . P 7 EDO F 1 203 301 EDO EDO . Q 8 CA E 1 301 1 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 6 -37.26 1.681 43.289 1 97.88 ? C1 NAG 201 A 1 HETATM 2 C C2 NAG . . . K 6 -36.106 2.433 42.655 1 89.22 ? C2 NAG 201 A 1 HETATM 3 C C3 NAG . . . K 6 -36.093 2.195 41.154 1 94.55 ? C3 NAG 201 A 1 HETATM 4 C C4 NAG . . . K 6 -36.134 0.705 40.85 1 105.06 ? C4 NAG 201 A 1 HETATM 5 C C5 NAG . . . K 6 -37.317 0.079 41.55 1 100.57 ? C5 NAG 201 A 1 HETATM 6 C C6 NAG . . . K 6 -37.303 -1.425 41.4 1 101.84 ? C6 NAG 201 A 1 HETATM 7 C C7 NAG . . . K 6 -35.221 4.633 43.135 1 101.27 ? C7 NAG 201 A 1 HETATM 8 C C8 NAG . . . K 6 -35.551 6.07 43.356 1 88.59 ? C8 NAG 201 A 1 HETATM 9 N N2 NAG . . . K 6 -36.261 3.843 42.923 1 97.34 ? N2 NAG 201 A 1 HETATM 10 O O3 NAG . . . K 6 -34.904 2.76 40.598 1 73.11 ? O3 NAG 201 A 1 HETATM 11 O O4 NAG . . . K 6 -36.273 0.478 39.446 1 142.13 ? O4 NAG 201 A 1 HETATM 12 O O5 NAG . . . K 6 -37.179 0.314 42.933 1 89.93 ? O5 NAG 201 A 1 HETATM 13 O O6 NAG . . . K 6 -37.96 -1.945 42.559 1 74.63 ? O6 NAG 201 A 1 HETATM 14 O O7 NAG . . . K 6 -34.079 4.223 43.145 1 116.22 ? O7 NAG 201 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #