data_7SG2 # _model_server_result.job_id oXxu21DV8l_GM62XoS8rGg _model_server_result.datetime_utc '2024-11-17 17:49:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":301}' # _entry.id 7SG2 # _exptl.entry_id 7SG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.16 _cell.angle_gamma 90 _cell.entry_id 7SG2 _cell.length_a 137.245 _cell.length_b 75.108 _cell.length_c 216.431 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L,M,N,Q,T,U,W 1 1 C,D,H,I,J,O,P,R,S,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 R N N ? 7 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 109 A CYS 107 1_555 A SG CYS 165 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 28 B CYS 15 1_555 B SG CYS 92 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 130 B CYS 117 1_555 B SG CYS 186 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 109 F CYS 107 1_555 C SG CYS 165 F CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 D SG CYS 28 G CYS 15 1_555 D SG CYS 92 G CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 D SG CYS 130 G CYS 117 1_555 D SG CYS 186 G CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 E SG CYS 22 D CYS 23 1_555 E SG CYS 88 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 E SG CYS 132 D CYS 151 1_555 E SG CYS 182 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 E SG CYS 157 D CYS 176 1_555 F SG CYS 173 E CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 F SG CYS 24 E CYS 23 1_555 F SG CYS 94 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 F SG CYS 147 E CYS 158 1_555 F SG CYS 212 E CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 I SG CYS 22 I CYS 23 1_555 I SG CYS 88 I CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 I SG CYS 132 I CYS 151 1_555 I SG CYS 182 I CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 I SG CYS 157 I CYS 176 1_555 J SG CYS 173 J CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 J SG CYS 24 J CYS 23 1_555 J SG CYS 94 J CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 J SG CYS 147 J CYS 157 1_555 J SG CYS 212 J CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 120 A ASN 118 1_555 K C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 C ND2 ASN 120 F ASN 118 1_555 O C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? metalc ? metalc1 B O THR 198 B THR 185 1_555 N CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc2 B OG1 THR 198 B THR 185 1_555 N CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc3 B OE2 GLU 200 B GLU 187 1_555 N CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc4 F OD1 ASP 12 E ASP 11 1_555 Q CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? metalc ? metalc5 F O ILE 13 E ILE 12 1_555 Q CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc6 F OG SER 220 E SER 231 1_555 Q CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 7SG2 _atom_sites.fract_transf_matrix[1][1] 0.007286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001703 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 NAG A 1 201 201 NAG NAG . L 7 EDO A 1 202 203 EDO EDO . M 8 ACT A 1 203 204 ACT ACT . N 9 CA B 1 201 1 CA CA . O 6 NAG F 1 201 201 NAG NAG . P 8 ACT F 1 202 301 ACT ACT . Q 9 CA E 1 301 2 CA CA . R 7 EDO J 1 300 300 EDO EDO . S 7 EDO J 1 301 301 EDO EDO . T 10 HOH A 1 301 2 HOH HOH . T 10 HOH A 2 302 6 HOH HOH . U 10 HOH B 1 301 9 HOH HOH . U 10 HOH B 2 302 7 HOH HOH . U 10 HOH B 3 303 4 HOH HOH . V 10 HOH F 1 301 10 HOH HOH . W 10 HOH E 1 401 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . S 7 20.88 13.674 89.623 1 81.01 ? C1 EDO 301 J 1 HETATM 2 O O1 EDO . . . S 7 22.011 14.546 89.724 1 82.44 ? O1 EDO 301 J 1 HETATM 3 C C2 EDO . . . S 7 20.949 12.897 88.313 1 81.69 ? C2 EDO 301 J 1 HETATM 4 O O2 EDO . . . S 7 20.979 13.813 87.212 1 77.41 ? O2 EDO 301 J 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #