data_7SGS # _model_server_result.job_id zW3rIgpIU4Xr_UTx5MflUw _model_server_result.datetime_utc '2024-12-23 06:46:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sgs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7SGS # _exptl.entry_id 7SGS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SGS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 71 B GLU 71 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc2 A OD2 ASP 98 B ASP 98 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? metalc ? metalc3 E O1B GTP . B GTP 501 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc4 C OE2 GLU 71 D GLU 71 1_555 I MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc5 C OD2 ASP 98 D ASP 98 1_555 I MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? metalc ? metalc6 H O1G GTP . D GTP 501 1_555 I MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc7 H O1B GTP . D GTP 501 1_555 I MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 7SGS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GTP B 1 501 501 GTP GTP . F 5 MG B 1 502 502 MG MG . G 6 GDP C 1 501 501 GDP GDP . H 4 GTP D 1 501 501 GTP GTP . I 5 MG D 1 502 502 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 4 -26.279 111.988 -71.785 1 57.76 ? PG GTP 501 B 1 HETATM 2 O O1G GTP . . . E 4 -25.615 110.915 -72.609 1 57.76 ? O1G GTP 501 B 1 HETATM 3 O O2G GTP . . . E 4 -27.501 112.458 -72.493 1 57.76 ? O2G GTP 501 B 1 HETATM 4 O O3G GTP . . . E 4 -25.383 113.178 -71.621 1 57.76 ? O3G GTP 501 B 1 HETATM 5 O O3B GTP . . . E 4 -26.713 111.478 -70.334 1 57.76 ? O3B GTP 501 B 1 HETATM 6 P PB GTP . . . E 4 -25.934 110.281 -69.633 1 57.76 ? PB GTP 501 B 1 HETATM 7 O O1B GTP . . . E 4 -26.277 109.06 -70.458 1 57.76 ? O1B GTP 501 B 1 HETATM 8 O O2B GTP . . . E 4 -26.409 110.017 -68.255 1 57.76 ? O2B GTP 501 B 1 HETATM 9 O O3A GTP . . . E 4 -24.366 110.637 -69.652 1 57.76 ? O3A GTP 501 B 1 HETATM 10 P PA GTP . . . E 4 -23.372 110.622 -68.379 1 57.76 ? PA GTP 501 B 1 HETATM 11 O O1A GTP . . . E 4 -22.272 109.678 -68.761 1 57.76 ? O1A GTP 501 B 1 HETATM 12 O O2A GTP . . . E 4 -23.985 110.197 -67.066 1 57.76 ? O2A GTP 501 B 1 HETATM 13 O O5' GTP . . . E 4 -22.691 112.077 -68.224 1 57.76 ? O5' GTP 501 B 1 HETATM 14 C C5' GTP . . . E 4 -21.355 112.401 -68.666 1 57.76 ? C5' GTP 501 B 1 HETATM 15 C C4' GTP . . . E 4 -20.202 112.129 -67.638 1 57.76 ? C4' GTP 501 B 1 HETATM 16 O O4' GTP . . . E 4 -20.265 110.861 -67.013 1 57.76 ? O4' GTP 501 B 1 HETATM 17 C C3' GTP . . . E 4 -18.812 112.142 -68.284 1 57.76 ? C3' GTP 501 B 1 HETATM 18 O O3' GTP . . . E 4 -18.226 113.414 -68.117 1 57.76 ? O3' GTP 501 B 1 HETATM 19 C C2' GTP . . . E 4 -18.032 110.984 -67.638 1 57.76 ? C2' GTP 501 B 1 HETATM 20 O O2' GTP . . . E 4 -16.837 111.385 -67.007 1 57.76 ? O2' GTP 501 B 1 HETATM 21 C C1' GTP . . . E 4 -18.993 110.386 -66.616 1 57.76 ? C1' GTP 501 B 1 HETATM 22 N N9 GTP . . . E 4 -18.973 108.878 -66.564 1 57.76 ? N9 GTP 501 B 1 HETATM 23 C C8 GTP . . . E 4 -19.557 108.008 -67.458 1 57.76 ? C8 GTP 501 B 1 HETATM 24 N N7 GTP . . . E 4 -19.32 106.74 -67.062 1 57.76 ? N7 GTP 501 B 1 HETATM 25 C C5 GTP . . . E 4 -18.612 106.739 -65.934 1 57.76 ? C5 GTP 501 B 1 HETATM 26 C C6 GTP . . . E 4 -18.093 105.709 -65.076 1 57.76 ? C6 GTP 501 B 1 HETATM 27 O O6 GTP . . . E 4 -18.28 104.524 -65.315 1 57.76 ? O6 GTP 501 B 1 HETATM 28 N N1 GTP . . . E 4 -17.351 106.066 -63.921 1 57.76 ? N1 GTP 501 B 1 HETATM 29 C C2 GTP . . . E 4 -17.123 107.421 -63.622 1 57.76 ? C2 GTP 501 B 1 HETATM 30 N N2 GTP . . . E 4 -16.43 107.764 -62.562 1 57.76 ? N2 GTP 501 B 1 HETATM 31 N N3 GTP . . . E 4 -17.643 108.42 -64.47 1 57.76 ? N3 GTP 501 B 1 HETATM 32 C C4 GTP . . . E 4 -18.375 108.097 -65.606 1 57.76 ? C4 GTP 501 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 1112 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 32 #