data_7SGU # _model_server_result.job_id tU41gNxJLbIBM41IGsoOXg _model_server_result.datetime_utc '2024-10-18 16:26:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sgu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7SGU # _exptl.entry_id 7SGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 263.294 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-amino-N-(naphthalen-1-yl)pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7SGU _cell.length_a 85.075 _cell.length_b 85.075 _cell.length_c 132.548 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 192 A CYS 189 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc2 A SG CYS 195 A CYS 192 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 A SG CYS 227 A CYS 224 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 A SG CYS 229 A CYS 226 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C16 H13 N3 O' _chem_comp.formula_weight 263.294 _chem_comp.id 9EI _chem_comp.mon_nstd_flag . _chem_comp.name 5-amino-N-(naphthalen-1-yl)pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 9EI doub 1 n y C3 C4 9EI sing 2 n y C2 C1 9EI sing 3 n y N30 C10 9EI sing 4 n n C4 N5 9EI sing 5 n n C4 C21 9EI doub 6 n y N5 C6 9EI sing 7 n n C1 C22 9EI doub 8 n y C10 C8 9EI doub 9 n y C10 C12 9EI sing 10 n y C8 C7 9EI sing 11 n y C22 C21 9EI sing 12 n y C22 C24 9EI sing 13 n y C12 N13 9EI doub 14 n y C21 C20 9EI sing 15 n y C7 C6 9EI sing 16 n n C7 C15 9EI doub 17 n y C6 O18 9EI doub 18 n n C24 C26 9EI doub 19 n y C20 C28 9EI doub 20 n y N13 C15 9EI sing 21 n y C26 C28 9EI sing 22 n y C8 H1 9EI sing 23 n n C1 H2 9EI sing 24 n n C2 H3 9EI sing 25 n n C3 H4 9EI sing 26 n n C12 H5 9EI sing 27 n n N30 H6 9EI sing 28 n n N30 H7 9EI sing 29 n n C15 H8 9EI sing 30 n n N5 H9 9EI sing 31 n n C24 H10 9EI sing 32 n n C26 H11 9EI sing 33 n n C28 H12 9EI sing 34 n n C20 H13 9EI sing 35 n n # _atom_sites.entry_id 7SGU _atom_sites.fract_transf_matrix[1][1] 0.011754 _atom_sites.fract_transf_matrix[1][2] 0.006786 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007544 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9EI A 1 501 501 9EI N08 . C 3 ZN A 1 502 502 ZN ZN . D 4 CL A 1 503 503 CL CL . E 4 CL A 1 504 504 CL CL . F 5 FMT A 1 505 505 FMT FMT . G 5 FMT A 1 506 506 FMT FMT . H 6 HOH A 1 601 214 HOH HOH . H 6 HOH A 2 602 5 HOH HOH . H 6 HOH A 3 603 144 HOH HOH . H 6 HOH A 4 604 135 HOH HOH . H 6 HOH A 5 605 1 HOH HOH . H 6 HOH A 6 606 143 HOH HOH . H 6 HOH A 7 607 151 HOH HOH . H 6 HOH A 8 608 66 HOH HOH . H 6 HOH A 9 609 2 HOH HOH . H 6 HOH A 10 610 3 HOH HOH . H 6 HOH A 11 611 163 HOH HOH . H 6 HOH A 12 612 219 HOH HOH . H 6 HOH A 13 613 211 HOH HOH . H 6 HOH A 14 614 67 HOH HOH . H 6 HOH A 15 615 217 HOH HOH . H 6 HOH A 16 616 222 HOH HOH . H 6 HOH A 17 617 113 HOH HOH . H 6 HOH A 18 618 79 HOH HOH . H 6 HOH A 19 619 137 HOH HOH . H 6 HOH A 20 620 157 HOH HOH . H 6 HOH A 21 621 13 HOH HOH . H 6 HOH A 22 622 51 HOH HOH . H 6 HOH A 23 623 62 HOH HOH . H 6 HOH A 24 624 165 HOH HOH . H 6 HOH A 25 625 108 HOH HOH . H 6 HOH A 26 626 121 HOH HOH . H 6 HOH A 27 627 116 HOH HOH . H 6 HOH A 28 628 216 HOH HOH . H 6 HOH A 29 629 152 HOH HOH . H 6 HOH A 30 630 133 HOH HOH . H 6 HOH A 31 631 97 HOH HOH . H 6 HOH A 32 632 136 HOH HOH . H 6 HOH A 33 633 17 HOH HOH . H 6 HOH A 34 634 130 HOH HOH . H 6 HOH A 35 635 204 HOH HOH . H 6 HOH A 36 636 11 HOH HOH . H 6 HOH A 37 637 44 HOH HOH . H 6 HOH A 38 638 127 HOH HOH . H 6 HOH A 39 639 28 HOH HOH . H 6 HOH A 40 640 10 HOH HOH . H 6 HOH A 41 641 82 HOH HOH . H 6 HOH A 42 642 206 HOH HOH . H 6 HOH A 43 643 8 HOH HOH . H 6 HOH A 44 644 112 HOH HOH . H 6 HOH A 45 645 134 HOH HOH . H 6 HOH A 46 646 9 HOH HOH . H 6 HOH A 47 647 4 HOH HOH . H 6 HOH A 48 648 120 HOH HOH . H 6 HOH A 49 649 76 HOH HOH . H 6 HOH A 50 650 68 HOH HOH . H 6 HOH A 51 651 77 HOH HOH . H 6 HOH A 52 652 123 HOH HOH . H 6 HOH A 53 653 23 HOH HOH . H 6 HOH A 54 654 140 HOH HOH . H 6 HOH A 55 655 141 HOH HOH . H 6 HOH A 56 656 148 HOH HOH . H 6 HOH A 57 657 59 HOH HOH . H 6 HOH A 58 658 80 HOH HOH . H 6 HOH A 59 659 18 HOH HOH . H 6 HOH A 60 660 139 HOH HOH . H 6 HOH A 61 661 41 HOH HOH . H 6 HOH A 62 662 89 HOH HOH . H 6 HOH A 63 663 29 HOH HOH . H 6 HOH A 64 664 160 HOH HOH . H 6 HOH A 65 665 19 HOH HOH . H 6 HOH A 66 666 209 HOH HOH . H 6 HOH A 67 667 87 HOH HOH . H 6 HOH A 68 668 166 HOH HOH . H 6 HOH A 69 669 56 HOH HOH . H 6 HOH A 70 670 210 HOH HOH . H 6 HOH A 71 671 25 HOH HOH . H 6 HOH A 72 672 63 HOH HOH . H 6 HOH A 73 673 131 HOH HOH . H 6 HOH A 74 674 169 HOH HOH . H 6 HOH A 75 675 107 HOH HOH . H 6 HOH A 76 676 14 HOH HOH . H 6 HOH A 77 677 71 HOH HOH . H 6 HOH A 78 678 92 HOH HOH . H 6 HOH A 79 679 138 HOH HOH . H 6 HOH A 80 680 69 HOH HOH . H 6 HOH A 81 681 103 HOH HOH . H 6 HOH A 82 682 6 HOH HOH . H 6 HOH A 83 683 132 HOH HOH . H 6 HOH A 84 684 208 HOH HOH . H 6 HOH A 85 685 183 HOH HOH . H 6 HOH A 86 686 203 HOH HOH . H 6 HOH A 87 687 212 HOH HOH . H 6 HOH A 88 688 201 HOH HOH . H 6 HOH A 89 689 20 HOH HOH . H 6 HOH A 90 690 155 HOH HOH . H 6 HOH A 91 691 54 HOH HOH . H 6 HOH A 92 692 109 HOH HOH . H 6 HOH A 93 693 12 HOH HOH . H 6 HOH A 94 694 90 HOH HOH . H 6 HOH A 95 695 128 HOH HOH . H 6 HOH A 96 696 37 HOH HOH . H 6 HOH A 97 697 21 HOH HOH . H 6 HOH A 98 698 149 HOH HOH . H 6 HOH A 99 699 110 HOH HOH . H 6 HOH A 100 700 35 HOH HOH . H 6 HOH A 101 701 24 HOH HOH . H 6 HOH A 102 702 78 HOH HOH . H 6 HOH A 103 703 74 HOH HOH . H 6 HOH A 104 704 93 HOH HOH . H 6 HOH A 105 705 145 HOH HOH . H 6 HOH A 106 706 200 HOH HOH . H 6 HOH A 107 707 33 HOH HOH . H 6 HOH A 108 708 114 HOH HOH . H 6 HOH A 109 709 83 HOH HOH . H 6 HOH A 110 710 81 HOH HOH . H 6 HOH A 111 711 86 HOH HOH . H 6 HOH A 112 712 156 HOH HOH . H 6 HOH A 113 713 7 HOH HOH . H 6 HOH A 114 714 57 HOH HOH . H 6 HOH A 115 715 124 HOH HOH . H 6 HOH A 116 716 98 HOH HOH . H 6 HOH A 117 717 27 HOH HOH . H 6 HOH A 118 718 38 HOH HOH . H 6 HOH A 119 719 105 HOH HOH . H 6 HOH A 120 720 31 HOH HOH . H 6 HOH A 121 721 70 HOH HOH . H 6 HOH A 122 722 94 HOH HOH . H 6 HOH A 123 723 158 HOH HOH . H 6 HOH A 124 724 99 HOH HOH . H 6 HOH A 125 725 101 HOH HOH . H 6 HOH A 126 726 22 HOH HOH . H 6 HOH A 127 727 30 HOH HOH . H 6 HOH A 128 728 34 HOH HOH . H 6 HOH A 129 729 167 HOH HOH . H 6 HOH A 130 730 26 HOH HOH . H 6 HOH A 131 731 32 HOH HOH . H 6 HOH A 132 732 125 HOH HOH . H 6 HOH A 133 733 150 HOH HOH . H 6 HOH A 134 734 170 HOH HOH . H 6 HOH A 135 735 202 HOH HOH . H 6 HOH A 136 736 64 HOH HOH . H 6 HOH A 137 737 159 HOH HOH . H 6 HOH A 138 738 146 HOH HOH . H 6 HOH A 139 739 95 HOH HOH . H 6 HOH A 140 740 36 HOH HOH . H 6 HOH A 141 741 48 HOH HOH . H 6 HOH A 142 742 100 HOH HOH . H 6 HOH A 143 743 104 HOH HOH . H 6 HOH A 144 744 129 HOH HOH . H 6 HOH A 145 745 118 HOH HOH . H 6 HOH A 146 746 153 HOH HOH . H 6 HOH A 147 747 117 HOH HOH . H 6 HOH A 148 748 119 HOH HOH . H 6 HOH A 149 749 142 HOH HOH . H 6 HOH A 150 750 106 HOH HOH . H 6 HOH A 151 751 60 HOH HOH . H 6 HOH A 152 752 115 HOH HOH . H 6 HOH A 153 753 72 HOH HOH . H 6 HOH A 154 754 73 HOH HOH . H 6 HOH A 155 755 220 HOH HOH . H 6 HOH A 156 756 45 HOH HOH . H 6 HOH A 157 757 84 HOH HOH . H 6 HOH A 158 758 91 HOH HOH . H 6 HOH A 159 759 65 HOH HOH . H 6 HOH A 160 760 168 HOH HOH . H 6 HOH A 161 761 47 HOH HOH . H 6 HOH A 162 762 42 HOH HOH . H 6 HOH A 163 763 126 HOH HOH . H 6 HOH A 164 764 39 HOH HOH . H 6 HOH A 165 765 61 HOH HOH . H 6 HOH A 166 766 40 HOH HOH . H 6 HOH A 167 767 55 HOH HOH . H 6 HOH A 168 768 46 HOH HOH . H 6 HOH A 169 769 16 HOH HOH . H 6 HOH A 170 770 88 HOH HOH . H 6 HOH A 171 771 58 HOH HOH . H 6 HOH A 172 772 15 HOH HOH . H 6 HOH A 173 773 154 HOH HOH . H 6 HOH A 174 774 75 HOH HOH . H 6 HOH A 175 775 43 HOH HOH . H 6 HOH A 176 776 96 HOH HOH . H 6 HOH A 177 777 161 HOH HOH . H 6 HOH A 178 778 111 HOH HOH . H 6 HOH A 179 779 164 HOH HOH . H 6 HOH A 180 780 195 HOH HOH . H 6 HOH A 181 781 85 HOH HOH . H 6 HOH A 182 782 221 HOH HOH . H 6 HOH A 183 783 49 HOH HOH . H 6 HOH A 184 784 218 HOH HOH . H 6 HOH A 185 785 215 HOH HOH . H 6 HOH A 186 786 162 HOH HOH . H 6 HOH A 187 787 182 HOH HOH . H 6 HOH A 188 788 191 HOH HOH . H 6 HOH A 189 789 199 HOH HOH . H 6 HOH A 190 790 50 HOH HOH . H 6 HOH A 191 791 174 HOH HOH . H 6 HOH A 192 792 197 HOH HOH . H 6 HOH A 193 793 189 HOH HOH . H 6 HOH A 194 794 207 HOH HOH . H 6 HOH A 195 795 185 HOH HOH . H 6 HOH A 196 796 102 HOH HOH . H 6 HOH A 197 797 188 HOH HOH . H 6 HOH A 198 798 52 HOH HOH . H 6 HOH A 199 799 178 HOH HOH . H 6 HOH A 200 800 205 HOH HOH . H 6 HOH A 201 801 147 HOH HOH . H 6 HOH A 202 802 186 HOH HOH . H 6 HOH A 203 803 190 HOH HOH . H 6 HOH A 204 804 172 HOH HOH . H 6 HOH A 205 805 181 HOH HOH . H 6 HOH A 206 806 194 HOH HOH . H 6 HOH A 207 807 171 HOH HOH . H 6 HOH A 208 808 196 HOH HOH . H 6 HOH A 209 809 187 HOH HOH . H 6 HOH A 210 810 198 HOH HOH . H 6 HOH A 211 811 176 HOH HOH . H 6 HOH A 212 812 177 HOH HOH . H 6 HOH A 213 813 213 HOH HOH . H 6 HOH A 214 814 175 HOH HOH . H 6 HOH A 215 815 184 HOH HOH . H 6 HOH A 216 816 180 HOH HOH . H 6 HOH A 217 817 53 HOH HOH . H 6 HOH A 218 818 192 HOH HOH . H 6 HOH A 219 819 173 HOH HOH . H 6 HOH A 220 820 122 HOH HOH . H 6 HOH A 221 821 193 HOH HOH . H 6 HOH A 222 822 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 9EI . . . B 2 0.222 69.438 37.484 1 40.5 ? C4 9EI 501 A 1 HETATM 2 C C6 9EI . . . B 2 -1.459 70.757 38.665 1 39.47 ? C6 9EI 501 A 1 HETATM 3 C C7 9EI . . . B 2 -2.336 71.961 38.505 1 40.07 ? C7 9EI 501 A 1 HETATM 4 C C8 9EI . . . B 2 -1.908 73.091 37.781 1 39.49 ? C8 9EI 501 A 1 HETATM 5 C C10 9EI . . . B 2 -2.742 74.227 37.692 1 43.88 ? C10 9EI 501 A 1 HETATM 6 C C1 9EI . . . B 2 1.899 67.158 37.584 1 40.6 ? C1 9EI 501 A 1 HETATM 7 C C2 9EI . . . B 2 0.71 67.119 36.874 1 41.74 ? C2 9EI 501 A 1 HETATM 8 C C3 9EI . . . B 2 -0.147 68.235 36.853 1 42.5 ? C3 9EI 501 A 1 HETATM 9 C C12 9EI . . . B 2 -3.988 74.156 38.279 1 44.45 ? C12 9EI 501 A 1 HETATM 10 O O18 9EI . . . B 2 -1.5 70.075 39.651 1 41.56 ? O18 9EI 501 A 1 HETATM 11 N N30 9EI . . . B 2 -2.382 75.375 37.014 1 43.61 ? N30 9EI 501 A 1 HETATM 12 N N13 9EI . . . B 2 -4.396 73.067 38.993 1 43.91 ? N13 9EI 501 A 1 HETATM 13 C C15 9EI . . . B 2 -3.626 71.968 39.084 1 42.73 ? C15 9EI 501 A 1 HETATM 14 N N5 9EI . . . B 2 -0.689 70.478 37.567 1 41.9 ? N5 9EI 501 A 1 HETATM 15 C C22 9EI . . . B 2 2.335 68.296 38.272 1 40.59 ? C22 9EI 501 A 1 HETATM 16 C C21 9EI . . . B 2 1.489 69.509 38.288 1 39.99 ? C21 9EI 501 A 1 HETATM 17 C C24 9EI . . . B 2 3.534 68.324 38.975 1 41.85 ? C24 9EI 501 A 1 HETATM 18 C C26 9EI . . . B 2 3.893 69.512 39.634 1 39.35 ? C26 9EI 501 A 1 HETATM 19 C C28 9EI . . . B 2 3.121 70.679 39.635 1 39.28 ? C28 9EI 501 A 1 HETATM 20 C C20 9EI . . . B 2 1.892 70.679 38.975 1 40.36 ? C20 9EI 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #