data_7SGZ
#
_model_server_result.job_id            -xVEQC3dK9imtt31zXhFgw 
_model_server_result.datetime_utc      '2024-10-10 02:28:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7sgz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":500}' 
#
_entry.id    7SGZ 
#
_exptl.entry_id    7SGZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7SGZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7SGZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 K N N 
? 11 M N N 
? 11 O N N 
? 11 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 187 A GLU 187 1_555 L MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc2 K O2B AGS . A AGS 701 1_555 L MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc3 K O3A AGS . A AGS 701 1_555 L MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc4 M O2G AGS . B AGS 401 1_555 N MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc5 C OD1 ASP 117 C ASP 117 1_555 P MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? 
metalc ? metalc6 C OD2 ASP 117 C ASP 117 1_555 P MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
metalc ? metalc7 O O2G AGS . C AGS 401 1_555 P MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc8 D OG1 THR 72 D THR 72 1_555 R MG MG . E MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc9 Q O3G AGS . D AGS 500 1_555 R MG MG . E MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc10 Q O2B AGS . D AGS 500 1_555 R MG MG . E MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc11 E OE2 GLU 159 E GLU 159 1_555 R MG MG . E MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
hydrog WATSON-CRICK hydrog1 I N1 DG 1 P DG 1 1_555 J N3 DC 30 T DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 I N2 DG 1 P DG 1 1_555 J O2 DC 30 T DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 I O6 DG 1 P DG 1 1_555 J N4 DC 30 T DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 I N3 DC 2 P DC 2 1_555 J N1 DG 29 T DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 I N4 DC 2 P DC 2 1_555 J O6 DG 29 T DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 I O2 DC 2 P DC 2 1_555 J N2 DG 29 T DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 I N1 DA 3 P DA 3 1_555 J N3 DT 28 T DT 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 I N6 DA 3 P DA 3 1_555 J O4 DT 28 T DT 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 I N1 DG 4 P DG 4 1_555 J N3 DC 27 T DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 I N2 DG 4 P DG 4 1_555 J O2 DC 27 T DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 I O6 DG 4 P DG 4 1_555 J N4 DC 27 T DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DA-DC MISPAIR' hydrog12 I N1 DA 5 P DA 5 1_555 J N4 DC 27 T DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog13 I O2 DC 6 P DC 6 1_555 J N2 DG 25 T DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DT-DG MISPAIR' hydrog14 I O2 DT 9 P DT 9 1_555 J N2 DG 23 T DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DA-DT PAIR' hydrog15 I N1 DA 10 P DA 10 1_555 J N3 DT 21 T DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 45 n n 
PG O2G AGS sing 46 n n 
PG O3G AGS sing 47 n n 
PG O3B AGS sing 48 n n 
PB O1B AGS doub 49 n n 
PB O2B AGS sing 50 n n 
PB O3B AGS sing 51 n n 
PB O3A AGS sing 52 n n 
PA O1A AGS doub 53 n n 
PA O2A AGS sing 54 n n 
PA O3A AGS sing 55 n n 
PA O5' AGS sing 56 n n 
O5' C5' AGS sing 57 n n 
C5' C4' AGS sing 58 n n 
C4' O4' AGS sing 59 n n 
C4' C3' AGS sing 60 n n 
O4' C1' AGS sing 61 n n 
C3' O3' AGS sing 62 n n 
C3' C2' AGS sing 63 n n 
C2' O2' AGS sing 64 n n 
C2' C1' AGS sing 65 n n 
C1' N9 AGS sing 66 n n 
N9 C8 AGS sing 67 n y 
N9 C4 AGS sing 68 n y 
C8 N7 AGS doub 69 n y 
N7 C5 AGS sing 70 n y 
C5 C6 AGS sing 71 n y 
C5 C4 AGS doub 72 n y 
C6 N6 AGS sing 73 n n 
C6 N1 AGS doub 74 n y 
N1 C2 AGS sing 75 n y 
C2 N3 AGS doub 76 n y 
N3 C4 AGS sing 77 n y 
O2G HOG2 AGS sing 78 n n 
O3G H21 AGS sing 79 n n 
O2B HOB2 AGS sing 80 n n 
O2A HOA2 AGS sing 81 n n 
C5' "H5'1" AGS sing 82 n n 
C5' "H5'2" AGS sing 83 n n 
C4' H4' AGS sing 84 n n 
C3' H3' AGS sing 85 n n 
O3' HO3' AGS sing 86 n n 
C2' H2' AGS sing 87 n n 
O2' HO2' AGS sing 88 n n 
C1' H1' AGS sing 89 n n 
C8 H8 AGS sing 90 n n 
N6 HN61 AGS sing 91 n n 
N6 HN62 AGS sing 92 n n 
C2 H2 AGS sing 93 n n 
#
_atom_sites.entry_id                     7SGZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 AGS A 1 701 500 AGS AGS . 
L 12 MG A 1 702 505 MG MG . 
M 11 AGS B 1 401 500 AGS AGS . 
N 12 MG B 1 402 505 MG MG . 
O 11 AGS C 1 401 500 AGS AGS . 
P 12 MG C 1 402 505 MG MG . 
Q 11 AGS D 1 500 500 AGS AGS . 
R 12 MG E 1 401 505 MG MG . 
S 13 ADP E 1 402 500 ADP ADP . 
T 14 PO4 E 1 403 1 PO4 PO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . Q 11 162.209 175.489 135.01 1 33.38 ? PG AGS 500 D 1 
HETATM 2 S S1G AGS . . . Q 11 160.409 175.155 135.678 1 33.38 ? S1G AGS 500 D 1 
HETATM 3 O O2G AGS . . . Q 11 162.981 174.14 134.932 1 33.38 ? O2G AGS 500 D 1 
HETATM 4 O O3G AGS . . . Q 11 162.948 176.445 135.993 1 33.38 ? O3G AGS 500 D 1 
HETATM 5 P PB AGS . . . Q 11 162.859 177.505 133.261 1 33.38 ? PB AGS 500 D 1 
HETATM 6 O O1B AGS . . . Q 11 161.861 178.533 132.892 1 33.38 ? O1B AGS 500 D 1 
HETATM 7 O O2B AGS . . . Q 11 163.672 177.891 134.499 1 33.38 ? O2B AGS 500 D 1 
HETATM 8 O O3B AGS . . . Q 11 162.146 176.124 133.586 1 33.38 ? O3B AGS 500 D 1 
HETATM 9 P PA AGS . . . Q 11 164.924 178.47 131.735 1 33.38 ? PA AGS 500 D 1 
HETATM 10 O O1A AGS . . . Q 11 164.465 179.764 132.285 1 33.38 ? O1A AGS 500 D 1 
HETATM 11 O O2A AGS . . . Q 11 166.299 178.034 132.25 1 33.38 ? O2A AGS 500 D 1 
HETATM 12 O O3A AGS . . . Q 11 163.916 177.301 132.098 1 33.38 ? O3A AGS 500 D 1 
HETATM 13 O O5' AGS . . . Q 11 164.908 178.564 130.156 1 33.38 ? O5' AGS 500 D 1 
HETATM 14 C C5' AGS . . . Q 11 165.981 179.217 129.451 1 33.38 ? C5' AGS 500 D 1 
HETATM 15 C C4' AGS . . . Q 11 166.172 178.546 128.114 1 33.38 ? C4' AGS 500 D 1 
HETATM 16 O O4' AGS . . . Q 11 164.916 178.525 127.403 1 33.38 ? O4' AGS 500 D 1 
HETATM 17 C C3' AGS . . . Q 11 167.158 179.242 127.182 1 33.38 ? C3' AGS 500 D 1 
HETATM 18 O O3' AGS . . . Q 11 167.79 178.305 126.317 1 33.38 ? O3' AGS 500 D 1 
HETATM 19 C C2' AGS . . . Q 11 166.256 180.209 126.414 1 33.38 ? C2' AGS 500 D 1 
HETATM 20 O O2' AGS . . . Q 11 166.785 180.515 125.129 1 33.38 ? O2' AGS 500 D 1 
HETATM 21 C C1' AGS . . . Q 11 164.967 179.394 126.286 1 33.38 ? C1' AGS 500 D 1 
HETATM 22 N N9 AGS . . . Q 11 163.75 180.197 126.276 1 33.38 ? N9 AGS 500 D 1 
HETATM 23 C C8 AGS . . . Q 11 162.724 180.147 127.183 1 33.38 ? C8 AGS 500 D 1 
HETATM 24 N N7 AGS . . . Q 11 161.748 180.984 126.934 1 33.38 ? N7 AGS 500 D 1 
HETATM 25 C C5 AGS . . . Q 11 162.159 181.636 125.779 1 33.38 ? C5 AGS 500 D 1 
HETATM 26 C C6 AGS . . . Q 11 161.567 182.645 124.999 1 33.38 ? C6 AGS 500 D 1 
HETATM 27 N N6 AGS . . . Q 11 160.384 183.2 125.273 1 33.38 ? N6 AGS 500 D 1 
HETATM 28 N N1 AGS . . . Q 11 162.243 183.072 123.908 1 33.38 ? N1 AGS 500 D 1 
HETATM 29 C C2 AGS . . . Q 11 163.427 182.52 123.628 1 33.38 ? C2 AGS 500 D 1 
HETATM 30 N N3 AGS . . . Q 11 164.083 181.563 124.289 1 33.38 ? N3 AGS 500 D 1 
HETATM 31 C C4 AGS . . . Q 11 163.391 181.16 125.365 1 33.38 ? C4 AGS 500 D 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           31 
#