data_7SHN
#
_model_server_result.job_id            h-bdUlAAfqyhjgoFm3NbZg 
_model_server_result.datetime_utc      '2024-10-15 11:19:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7shn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    7SHN 
#
_exptl.entry_id    7SHN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1031.98 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name)' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C39 H68 N7 O17 P3 S' 
_chem_comp.formula_weight    1031.98 
_chem_comp.id                3VV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     oleoyl-CoA 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C03 C02 3VV sing 1 n n 
C03 C04 3VV sing 2 n n 
C01 C02 3VV sing 3 n n 
C04 C05 3VV sing 4 n n 
C05 C06 3VV sing 5 n n 
C07 C06 3VV sing 6 n n 
C07 C08 3VV sing 7 n n 
C08 C09 3VV sing 8 n n 
C09 C10 3VV doub 9 z n 
C11 C10 3VV sing 10 n n 
C11 C12 3VV sing 11 n n 
C12 C13 3VV sing 12 n n 
C13 C14 3VV sing 13 n n 
C14 C15 3VV sing 14 n n 
C15 C16 3VV sing 15 n n 
C16 C17 3VV sing 16 n n 
O19 C18 3VV doub 17 n n 
C17 C18 3VV sing 18 n n 
C18 S20 3VV sing 19 n n 
S20 C21 3VV sing 20 n n 
C21 C22 3VV sing 21 n n 
N23 C22 3VV sing 22 n n 
N23 C24 3VV sing 23 n n 
O25 C24 3VV doub 24 n n 
C65 N64 3VV doub 25 n y 
C65 N66 3VV sing 26 n y 
C24 C26 3VV sing 27 n n 
N64 C62 3VV sing 28 n y 
N66 C67 3VV doub 29 n y 
C62 N63 3VV sing 30 n n 
C62 C61 3VV doub 31 n y 
C34 C33 3VV sing 32 n n 
C67 C61 3VV sing 33 n y 
C67 N58 3VV sing 34 n y 
O48 C47 3VV sing 35 n n 
O48 C49 3VV sing 36 n n 
C26 C27 3VV sing 37 n n 
O56 P54 3VV doub 38 n n 
O30 C29 3VV doub 39 n n 
C61 N60 3VV sing 40 n y 
C47 C46 3VV sing 41 n n 
C47 C52 3VV sing 42 n n 
C49 N58 3VV sing 43 n n 
C49 C50 3VV sing 44 n n 
C27 N28 3VV sing 45 n n 
O32 C31 3VV sing 46 n n 
N58 C59 3VV sing 47 n y 
C29 N28 3VV sing 48 n n 
C29 C31 3VV sing 49 n n 
C46 O45 3VV sing 50 n n 
O53 P54 3VV sing 51 n n 
O53 C52 3VV sing 52 n n 
C33 C31 3VV sing 53 n n 
C33 C36 3VV sing 54 n n 
C33 C35 3VV sing 55 n n 
O55 P54 3VV sing 56 n n 
P54 O57 3VV sing 57 n n 
N60 C59 3VV doub 58 n y 
C52 C50 3VV sing 59 n n 
C36 O37 3VV sing 60 n n 
C50 O51 3VV sing 61 n n 
O45 P42 3VV sing 62 n n 
O41 P42 3VV sing 63 n n 
O41 P38 3VV sing 64 n n 
P42 O44 3VV doub 65 n n 
P42 O43 3VV sing 66 n n 
O37 P38 3VV sing 67 n n 
O40 P38 3VV doub 68 n n 
P38 O39 3VV sing 69 n n 
C10 H1 3VV sing 70 n n 
C13 H2 3VV sing 71 n n 
C13 H3 3VV sing 72 n n 
C15 H4 3VV sing 73 n n 
C15 H5 3VV sing 74 n n 
C17 H6 3VV sing 75 n n 
C17 H7 3VV sing 76 n n 
C21 H8 3VV sing 77 n n 
C21 H9 3VV sing 78 n n 
C22 H10 3VV sing 79 n n 
C22 H11 3VV sing 80 n n 
C26 H12 3VV sing 81 n n 
C26 H13 3VV sing 82 n n 
C01 H14 3VV sing 83 n n 
C01 H15 3VV sing 84 n n 
C01 H16 3VV sing 85 n n 
C02 H17 3VV sing 86 n n 
C02 H18 3VV sing 87 n n 
C03 H19 3VV sing 88 n n 
C03 H20 3VV sing 89 n n 
C04 H21 3VV sing 90 n n 
C04 H22 3VV sing 91 n n 
C05 H23 3VV sing 92 n n 
C05 H24 3VV sing 93 n n 
C06 H25 3VV sing 94 n n 
C06 H26 3VV sing 95 n n 
C07 H27 3VV sing 96 n n 
C07 H28 3VV sing 97 n n 
C08 H29 3VV sing 98 n n 
C08 H30 3VV sing 99 n n 
C09 H31 3VV sing 100 n n 
C11 H32 3VV sing 101 n n 
C11 H33 3VV sing 102 n n 
C12 H34 3VV sing 103 n n 
C12 H35 3VV sing 104 n n 
C14 H36 3VV sing 105 n n 
C14 H37 3VV sing 106 n n 
C16 H38 3VV sing 107 n n 
C16 H39 3VV sing 108 n n 
N23 H40 3VV sing 109 n n 
C27 H41 3VV sing 110 n n 
C27 H42 3VV sing 111 n n 
N28 H43 3VV sing 112 n n 
C31 H44 3VV sing 113 n n 
O32 H45 3VV sing 114 n n 
C34 H46 3VV sing 115 n n 
C34 H47 3VV sing 116 n n 
C34 H48 3VV sing 117 n n 
C35 H49 3VV sing 118 n n 
C35 H50 3VV sing 119 n n 
C35 H51 3VV sing 120 n n 
C36 H52 3VV sing 121 n n 
C36 H53 3VV sing 122 n n 
O39 H54 3VV sing 123 n n 
O43 H55 3VV sing 124 n n 
C46 H56 3VV sing 125 n n 
C46 H57 3VV sing 126 n n 
C47 H58 3VV sing 127 n n 
C49 H59 3VV sing 128 n n 
C50 H60 3VV sing 129 n n 
O51 H61 3VV sing 130 n n 
C52 H62 3VV sing 131 n n 
O55 H63 3VV sing 132 n n 
O57 H64 3VV sing 133 n n 
C59 H65 3VV sing 134 n n 
N63 H66 3VV sing 135 n n 
N63 H67 3VV sing 136 n n 
C65 H68 3VV sing 137 n n 
#
_atom_sites.entry_id                     7SHN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3VV A 1 800 800 3VV 3VV . 
D 2 3VV B 1 801 801 3VV 3VV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 3VV . . . D 2 126.257 83.173 120.37 1 65.09 ? C10 3VV 801 B 1 
HETATM 2 C C13 3VV . . . D 2 128.324 84.709 121.649 1 65.09 ? C13 3VV 801 B 1 
HETATM 3 C C15 3VV . . . D 2 128.279 87.101 120.794 1 65.09 ? C15 3VV 801 B 1 
HETATM 4 C C17 3VV . . . D 2 127.352 89.44 120.692 1 65.09 ? C17 3VV 801 B 1 
HETATM 5 C C21 3VV . . . D 2 130.558 92.176 119.61 1 65.09 ? C21 3VV 801 B 1 
HETATM 6 C C22 3VV . . . D 2 130.509 93.589 119.058 1 65.09 ? C22 3VV 801 B 1 
HETATM 7 C C24 3VV . . . D 2 132.016 95.204 120.2 1 65.09 ? C24 3VV 801 B 1 
HETATM 8 C C26 3VV . . . D 2 132.242 96.254 121.269 1 65.09 ? C26 3VV 801 B 1 
HETATM 9 P P38 3VV . . . D 2 129.785 102.799 116.327 1 65.09 ? P38 3VV 801 B 1 
HETATM 10 P P42 3VV . . . D 2 128.842 102.285 113.72 1 65.09 ? P42 3VV 801 B 1 
HETATM 11 P P54 3VV . . . D 2 123.642 98.115 113.02 1 65.09 ? P54 3VV 801 B 1 
HETATM 12 C C07 3VV . . . D 2 124.985 79.705 120.487 1 65.09 ? C07 3VV 801 B 1 
HETATM 13 C C08 3VV . . . D 2 125.861 80.777 119.852 1 65.09 ? C08 3VV 801 B 1 
HETATM 14 C C09 3VV . . . D 2 125.439 82.145 120.382 1 65.09 ? C09 3VV 801 B 1 
HETATM 15 C C11 3VV . . . D 2 127.68 83.036 119.84 1 65.09 ? C11 3VV 801 B 1 
HETATM 16 C C12 3VV . . . D 2 128.506 84.264 120.203 1 65.09 ? C12 3VV 801 B 1 
HETATM 17 C C14 3VV . . . D 2 127.685 86.091 121.764 1 65.09 ? C14 3VV 801 B 1 
HETATM 18 C C16 3VV . . . D 2 127.204 88.003 120.218 1 65.09 ? C16 3VV 801 B 1 
HETATM 19 C C18 3VV . . . D 2 128.391 90.205 119.885 1 65.09 ? C18 3VV 801 B 1 
HETATM 20 O O19 3VV . . . D 2 128.799 89.768 118.875 1 65.09 ? O19 3VV 801 B 1 
HETATM 21 S S20 3VV . . . D 2 128.994 91.81 120.445 1 65.09 ? S20 3VV 801 B 1 
HETATM 22 N N23 3VV . . . D 2 130.728 94.578 120.085 1 65.09 ? N23 3VV 801 B 1 
HETATM 23 O O25 3VV . . . D 2 132.883 94.899 119.467 1 65.09 ? O25 3VV 801 B 1 
HETATM 24 C C27 3VV . . . D 2 131.816 97.605 120.733 1 65.09 ? C27 3VV 801 B 1 
HETATM 25 N N28 3VV . . . D 2 132.652 98.674 121.237 1 65.09 ? N28 3VV 801 B 1 
HETATM 26 C C29 3VV . . . D 2 132.656 99.982 120.607 1 65.09 ? C29 3VV 801 B 1 
HETATM 27 O O30 3VV . . . D 2 133.376 100.806 121.059 1 65.09 ? O30 3VV 801 B 1 
HETATM 28 C C31 3VV . . . D 2 131.806 100.286 119.364 1 65.09 ? C31 3VV 801 B 1 
HETATM 29 O O32 3VV . . . D 2 132.607 101.002 118.462 1 65.09 ? O32 3VV 801 B 1 
HETATM 30 C C33 3VV . . . D 2 130.512 101.09 119.591 1 65.09 ? C33 3VV 801 B 1 
HETATM 31 C C34 3VV . . . D 2 129.586 100.447 120.607 1 65.09 ? C34 3VV 801 B 1 
HETATM 32 C C35 3VV . . . D 2 130.823 102.514 120.041 1 65.09 ? C35 3VV 801 B 1 
HETATM 33 C C36 3VV . . . D 2 129.713 101.111 118.291 1 65.09 ? C36 3VV 801 B 1 
HETATM 34 O O37 3VV . . . D 2 129.434 102.414 117.884 1 65.09 ? O37 3VV 801 B 1 
HETATM 35 O O39 3VV . . . D 2 131.178 102.331 115.979 1 65.09 ? O39 3VV 801 B 1 
HETATM 36 O O40 3VV . . . D 2 129.652 104.283 116.104 1 65.09 ? O40 3VV 801 B 1 
HETATM 37 O O41 3VV . . . D 2 128.732 102.044 115.333 1 65.09 ? O41 3VV 801 B 1 
HETATM 38 O O43 3VV . . . D 2 130.222 101.88 113.261 1 65.09 ? O43 3VV 801 B 1 
HETATM 39 O O44 3VV . . . D 2 128.612 103.745 113.441 1 65.09 ? O44 3VV 801 B 1 
HETATM 40 O O45 3VV . . . D 2 127.693 101.387 112.971 1 65.09 ? O45 3VV 801 B 1 
HETATM 41 C C46 3VV . . . D 2 126.96 100.491 113.741 1 65.09 ? C46 3VV 801 B 1 
HETATM 42 C C47 3VV . . . D 2 125.526 100.893 113.587 1 65.09 ? C47 3VV 801 B 1 
HETATM 43 O O48 3VV . . . D 2 125.536 102.484 113.374 1 65.09 ? O48 3VV 801 B 1 
HETATM 44 C C49 3VV . . . D 2 124.436 102.756 112.795 1 65.09 ? C49 3VV 801 B 1 
HETATM 45 C C50 3VV . . . D 2 123.981 101.45 112.076 1 65.09 ? C50 3VV 801 B 1 
HETATM 46 O O51 3VV . . . D 2 122.77 101.099 112.58 1 65.09 ? O51 3VV 801 B 1 
HETATM 47 C C52 3VV . . . D 2 125.108 100.487 112.438 1 65.09 ? C52 3VV 801 B 1 
HETATM 48 O O53 3VV . . . D 2 124.88 98.984 112.374 1 65.09 ? O53 3VV 801 B 1 
HETATM 49 O O55 3VV . . . D 2 123.555 98.339 114.501 1 65.09 ? O55 3VV 801 B 1 
HETATM 50 O O56 3VV . . . D 2 122.351 98.557 112.38 1 65.09 ? O56 3VV 801 B 1 
HETATM 51 O O57 3VV . . . D 2 123.867 96.652 112.744 1 65.09 ? O57 3VV 801 B 1 
HETATM 52 N N58 3VV . . . D 2 124.628 103.99 111.979 1 65.09 ? N58 3VV 801 B 1 
HETATM 53 C C59 3VV . . . D 2 125.748 104.688 111.952 1 65.09 ? C59 3VV 801 B 1 
HETATM 54 N N60 3VV . . . D 2 125.598 105.748 111.181 1 65.09 ? N60 3VV 801 B 1 
HETATM 55 C C61 3VV . . . D 2 124.344 105.741 110.709 1 65.09 ? C61 3VV 801 B 1 
HETATM 56 C C62 3VV . . . D 2 123.599 106.58 109.858 1 65.09 ? C62 3VV 801 B 1 
HETATM 57 N N63 3VV . . . D 2 124.205 107.769 109.288 1 65.09 ? N63 3VV 801 B 1 
HETATM 58 N N64 3VV . . . D 2 122.341 106.284 109.576 1 65.09 ? N64 3VV 801 B 1 
HETATM 59 C C65 3VV . . . D 2 121.778 105.201 110.092 1 65.09 ? C65 3VV 801 B 1 
HETATM 60 N N66 3VV . . . D 2 122.441 104.387 110.896 1 65.09 ? N66 3VV 801 B 1 
HETATM 61 C C67 3VV . . . D 2 123.72 104.628 111.221 1 65.09 ? C67 3VV 801 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           61 
#