data_7SHZ # _model_server_result.job_id CiqiOrB6i8OOMPEQfu-_Lg _model_server_result.datetime_utc '2024-12-28 11:44:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7shz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":602}' # _entry.id 7SHZ # _exptl.entry_id 7SHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 11 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.131 _cell.angle_gamma 90 _cell.entry_id 7SHZ _cell.length_a 93.34 _cell.length_b 187.34 _cell.length_c 148.834 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 ? hexameric 6 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F,H,K,L,M,N,P,Q,R,S,T,U,V,W,Z,AA,CA,FA,HA,KA,LA 1 1 B,E,I,O,X,BA,EA,IA 2 1 D,G,J,Y,DA,GA,JA 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+3/2,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 123.104076 93.67 72.471233 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 4 6 4 MAN MAN C1 O1 . O6 HO6 . sing 6 ? 4 7 3 MAN BMA C1 O1 . O6 HO6 . sing 7 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 5 4 3 MAN BMA C1 O1 . O6 HO6 . sing 10 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 12 ? 6 4 3 MAN BMA C1 O1 . O6 HO6 . sing 13 ? 6 5 4 MAN MAN C1 O1 . O3 HO3 . sing 14 ? 6 6 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n M NAG 1 M 1 NAG B 545 NAG 4 n M NAG 2 M 2 NAG B 546 NAG 4 n M BMA 3 M 3 BMA B 551 BMA 4 n M MAN 4 M 4 MAN B 553 MAN 4 n M MAN 5 M 5 MAN B 555 MAN 4 n M MAN 6 M 6 MAN B 554 MAN 4 n M MAN 7 M 7 MAN B 552 MAN 5 n N NAG 1 N 1 NAG A 544 NAG 5 n N NAG 2 N 2 NAG A 545 NAG 5 n N BMA 3 N 3 BMA A 546 BMA 5 n N MAN 4 N 4 MAN A 547 MAN 6 n O NAG 1 O 1 NAG H 545 NAG 6 n O NAG 2 O 2 NAG H 546 NAG 6 n O BMA 3 O 3 BMA H 547 BMA 6 n O MAN 4 O 4 MAN H 548 MAN 6 n O MAN 5 O 5 MAN H 551 MAN 6 n O MAN 6 O 6 MAN H 552 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 B CYS 358 1_555 A SG CYS 120 B CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 166 B CYS 464 1_555 A SG CYS 226 B CYS 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 B SG CYS 23 K CYS 22 1_555 B SG CYS 97 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 C SG CYS 23 C CYS 22 1_555 C SG CYS 97 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf5 D SG CYS 23 I CYS 22 1_555 D SG CYS 97 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 E SG CYS 26 L CYS 23 1_555 E SG CYS 95 L CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf7 F SG CYS 26 D CYS 23 1_555 F SG CYS 95 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf8 G SG CYS 26 J CYS 23 1_555 G SG CYS 95 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 H SG CYS 60 A CYS 358 1_555 H SG CYS 120 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 H SG CYS 166 A CYS 464 1_555 H SG CYS 226 A CYS 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf11 I SG CYS 60 H CYS 358 1_555 I SG CYS 120 H CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 I SG CYS 166 H CYS 464 1_555 I SG CYS 226 H CYS 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 J SG CYS 60 G CYS 358 1_555 J SG CYS 120 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 J SG CYS 166 G CYS 464 1_555 J SG CYS 226 G CYS 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 K SG CYS 23 E CYS 22 1_555 K SG CYS 97 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf16 L SG CYS 26 F CYS 23 1_555 L SG CYS 95 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? covale ? covale1 A ND2 ASN 73 B ASN 371 1_555 P C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 96 B ASN 394 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 H ND2 ASN 96 A ASN 394 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 I ND2 ASN 96 H ASN 394 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale7 M O3 BMA . M BMA 3 1_555 M C1 MAN . M MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 M O6 BMA . M BMA 3 1_555 M C1 MAN . M MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 M O2 MAN . M MAN 4 1_555 M C1 MAN . M MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale10 M O6 MAN . M MAN 4 1_555 M C1 MAN . M MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale11 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 N O4 NAG . N NAG 2 1_555 N C1 BMA . N BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 N O6 BMA . N BMA 3 1_555 N C1 MAN . N MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale14 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale15 O O4 NAG . O NAG 2 1_555 O C1 BMA . O BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale16 O O6 BMA . O BMA 3 1_555 O C1 MAN . O MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale17 O O3 BMA . O BMA 3 1_555 O C1 MAN . O MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale18 O O3 MAN . O MAN 4 1_555 O C1 MAN . O MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 270 n n C1 O1 MAN sing 271 n n C1 O5 MAN sing 272 n n C1 H1 MAN sing 273 n n C2 C3 MAN sing 274 n n C2 O2 MAN sing 275 n n C2 H2 MAN sing 276 n n C3 C4 MAN sing 277 n n C3 O3 MAN sing 278 n n C3 H3 MAN sing 279 n n C4 C5 MAN sing 280 n n C4 O4 MAN sing 281 n n C4 H4 MAN sing 282 n n C5 C6 MAN sing 283 n n C5 O5 MAN sing 284 n n C5 H5 MAN sing 285 n n C6 O6 MAN sing 286 n n C6 H61 MAN sing 287 n n C6 H62 MAN sing 288 n n O1 HO1 MAN sing 289 n n O2 HO2 MAN sing 290 n n O3 HO3 MAN sing 291 n n O4 HO4 MAN sing 292 n n O6 HO6 MAN sing 293 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7SHZ _atom_sites.fract_transf_matrix[1][1] 0.010714 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002499 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 7 NAG B 1 601 550 NAG NAG . Q 8 PO4 C 1 201 1 PO4 PO4 . R 8 PO4 C 1 202 2 PO4 PO4 . S 9 ACT C 1 203 1 ACT ACT . T 10 EDO D 1 201 1 EDO EDO . U 11 MAN A 1 601 548 MAN MAN . V 11 MAN A 1 602 549 MAN MAN . W 12 GOL A 1 603 1 GOL GOL . X 7 NAG H 1 601 550 NAG NAG . Y 7 NAG G 1 601 544 NAG NAG . Z 10 EDO E 1 201 2 EDO EDO . AA 13 HOH B 1 701 4 HOH HOH . AA 13 HOH B 2 702 20 HOH HOH . BA 13 HOH K 1 201 13 HOH HOH . BA 13 HOH K 2 202 10 HOH HOH . BA 13 HOH K 3 203 12 HOH HOH . CA 13 HOH C 1 301 19 HOH HOH . DA 13 HOH I 1 201 11 HOH HOH . EA 13 HOH L 1 201 9 HOH HOH . EA 13 HOH L 2 202 16 HOH HOH . FA 13 HOH D 1 301 3 HOH HOH . FA 13 HOH D 2 302 25 HOH HOH . FA 13 HOH D 3 303 24 HOH HOH . FA 13 HOH D 4 304 18 HOH HOH . GA 13 HOH J 1 201 14 HOH HOH . HA 13 HOH A 1 701 21 HOH HOH . HA 13 HOH A 2 702 5 HOH HOH . HA 13 HOH A 3 703 1 HOH HOH . HA 13 HOH A 4 704 27 HOH HOH . HA 13 HOH A 5 705 22 HOH HOH . IA 13 HOH H 1 701 2 HOH HOH . IA 13 HOH H 2 702 15 HOH HOH . IA 13 HOH H 3 703 6 HOH HOH . JA 13 HOH G 1 701 17 HOH HOH . JA 13 HOH G 2 702 26 HOH HOH . KA 13 HOH E 1 301 7 HOH HOH . LA 13 HOH F 1 201 23 HOH HOH . LA 13 HOH F 2 202 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . V 11 69.672 -38.175 49.156 1 153.96 ? C1 MAN 602 A 1 HETATM 2 C C2 MAN . . . V 11 70.655 -39.366 48.921 1 148.78 ? C2 MAN 602 A 1 HETATM 3 C C3 MAN . . . V 11 71.664 -39.039 47.824 1 139.87 ? C3 MAN 602 A 1 HETATM 4 C C4 MAN . . . V 11 70.965 -38.427 46.57 1 139.02 ? C4 MAN 602 A 1 HETATM 5 C C5 MAN . . . V 11 70.068 -37.22 46.972 1 142.2 ? C5 MAN 602 A 1 HETATM 6 C C6 MAN . . . V 11 69.326 -36.567 45.784 1 138.06 ? C6 MAN 602 A 1 HETATM 7 O O2 MAN . . . V 11 69.966 -40.554 48.458 1 148.05 ? O2 MAN 602 A 1 HETATM 8 O O3 MAN . . . V 11 72.425 -40.201 47.463 1 137.12 ? O3 MAN 602 A 1 HETATM 9 O O4 MAN . . . V 11 71.939 -38.022 45.57 1 140.09 ? O4 MAN 602 A 1 HETATM 10 O O5 MAN . . . V 11 69.098 -37.662 47.952 1 152.85 ? O5 MAN 602 A 1 HETATM 11 O O6 MAN . . . V 11 68.218 -37.403 45.401 1 129.37 ? O6 MAN 602 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 11 #