data_7SII
#
_model_server_result.job_id            MQj5agPyqjNGa82nILRrcQ 
_model_server_result.datetime_utc      '2024-11-22 00:20:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7sii 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    7SII 
#
_exptl.entry_id    7SII 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              674.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            cGAMP 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7SII 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7SII 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
#
_chem_comp.formula           'C20 H24 N10 O13 P2' 
_chem_comp.formula_weight    674.411 
_chem_comp.id                1SY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              cGAMP 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2',3' cGAMP;c-GMP-AMP;c[G(2',5')pA(3',5')p]" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O44 P18 1SY doub 1 n n 
O19 P18 1SY sing 2 n n 
P18 O17 1SY sing 3 n n 
P18 O20 1SY sing 4 n n 
O17 C16 1SY sing 5 n n 
O4' C4' 1SY sing 6 n n 
O4' C1' 1SY sing 7 n n 
C16 C4' 1SY sing 8 n n 
C8 N7 1SY doub 9 n y 
C8 N9 1SY sing 10 n y 
N7 C5 1SY sing 11 n y 
O20 C21 1SY sing 12 n n 
N9 C1' 1SY sing 13 n n 
N9 C4 1SY sing 14 n y 
N41 C40 1SY sing 15 n n 
C4' C3' 1SY sing 16 n n 
C1' C2' 1SY sing 17 n n 
C5 C4 1SY doub 18 n y 
C5 C6 1SY sing 19 n y 
N01 C6 1SY sing 20 n n 
C4 N3 1SY sing 21 n y 
C40 N42 1SY sing 22 n n 
C40 N39 1SY doub 23 n n 
C6 N1 1SY doub 24 n y 
N42 C36 1SY sing 25 n n 
N39 C38 1SY sing 26 n n 
C21 C22 1SY sing 27 n n 
C21 C32 1SY sing 28 n n 
O23 C22 1SY sing 29 n n 
N3 C2 1SY doub 30 n y 
C3' C2' 1SY sing 31 n n 
C3' O28 1SY sing 32 n n 
N1 C2 1SY sing 33 n y 
C2' O2' 1SY sing 34 n n 
C36 C37 1SY doub 35 n y 
C36 N33 1SY sing 36 n y 
C38 O43 1SY doub 37 n n 
C38 C37 1SY sing 38 n n 
C22 C24 1SY sing 39 n n 
C32 N33 1SY sing 40 n n 
C32 O31 1SY sing 41 n n 
C37 N35 1SY sing 42 n y 
N33 C34 1SY sing 43 n y 
O28 P27 1SY sing 44 n n 
N35 C34 1SY doub 45 n y 
O31 C24 1SY sing 46 n n 
C24 C25 1SY sing 47 n n 
O26 P27 1SY sing 48 n n 
O26 C25 1SY sing 49 n n 
P27 O29 1SY doub 50 n n 
P27 O30 1SY sing 51 n n 
C2 H1 1SY sing 52 n n 
N01 H2 1SY sing 53 n n 
N01 H3 1SY sing 54 n n 
C8 H4 1SY sing 55 n n 
C1' H5 1SY sing 56 n n 
C2' H6 1SY sing 57 n n 
O2' H7 1SY sing 58 n n 
C3' H8 1SY sing 59 n n 
C4' H9 1SY sing 60 n n 
C16 H10 1SY sing 61 n n 
C16 H11 1SY sing 62 n n 
O19 H12 1SY sing 63 n n 
C21 H13 1SY sing 64 n n 
C22 H14 1SY sing 65 n n 
O23 H15 1SY sing 66 n n 
C24 H16 1SY sing 67 n n 
C25 H17 1SY sing 68 n n 
C25 H18 1SY sing 69 n n 
O30 H19 1SY sing 70 n n 
C32 H20 1SY sing 71 n n 
C34 H21 1SY sing 72 n n 
N41 H22 1SY sing 73 n n 
N41 H23 1SY sing 74 n n 
N42 H24 1SY sing 75 n n 
#
_atom_sites.entry_id                     7SII 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 9IM A 1 401 1 9IM S53 . 
F 3 1SY B 1 401 1 1SY 1SY . 
G 2 9IM C 1 401 2 9IM S53 . 
H 3 1SY D 1 401 2 1SY 1SY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 1SY . . . F 3 99.166 101.273 128.272 1 63.8 ? C2 1SY 401 B 1 
HETATM 2 N N01 1SY . . . F 3 96.712 103.517 129.901 1 63.8 ? N01 1SY 401 B 1 
HETATM 3 C C6 1SY . . . F 3 97.547 102.876 128.886 1 63.8 ? C6 1SY 401 B 1 
HETATM 4 N N1 1SY . . . F 3 98.383 101.874 129.227 1 63.8 ? N1 1SY 401 B 1 
HETATM 5 N N3 1SY . . . F 3 99.098 101.694 126.954 1 63.8 ? N3 1SY 401 B 1 
HETATM 6 C C4 1SY . . . F 3 98.278 102.677 126.623 1 63.8 ? C4 1SY 401 B 1 
HETATM 7 C C5 1SY . . . F 3 97.482 103.294 127.581 1 63.8 ? C5 1SY 401 B 1 
HETATM 8 N N7 1SY . . . F 3 96.667 104.389 126.801 1 63.8 ? N7 1SY 401 B 1 
HETATM 9 C C8 1SY . . . F 3 97.088 104.277 125.49 1 63.8 ? C8 1SY 401 B 1 
HETATM 10 N N9 1SY . . . F 3 97.969 103.311 125.527 1 63.8 ? N9 1SY 401 B 1 
HETATM 11 C C1' 1SY . . . F 3 98.604 102.928 124.334 1 63.8 ? C1' 1SY 401 B 1 
HETATM 12 C C2' 1SY . . . F 3 97.905 101.715 123.781 1 63.8 ? C2' 1SY 401 B 1 
HETATM 13 O O2' 1SY . . . F 3 98.864 100.823 123.161 1 63.8 ? O2' 1SY 401 B 1 
HETATM 14 C C3' 1SY . . . F 3 97.007 102.218 122.804 1 63.8 ? C3' 1SY 401 B 1 
HETATM 15 C C4' 1SY . . . F 3 97.71 103.369 122.2 1 63.8 ? C4' 1SY 401 B 1 
HETATM 16 C C16 1SY . . . F 3 96.741 104.327 121.629 1 63.8 ? C16 1SY 401 B 1 
HETATM 17 O O17 1SY . . . F 3 96.132 105.077 122.667 1 63.8 ? O17 1SY 401 B 1 
HETATM 18 P P18 1SY . . . F 3 94.918 106.193 122.241 1 63.8 ? P18 1SY 401 B 1 
HETATM 19 O O19 1SY . . . F 3 95.152 107.426 123.039 1 63.8 ? O19 1SY 401 B 1 
HETATM 20 O O20 1SY . . . F 3 93.329 105.725 122.456 1 63.8 ? O20 1SY 401 B 1 
HETATM 21 C C21 1SY . . . F 3 93.093 104.334 122.752 1 63.8 ? C21 1SY 401 B 1 
HETATM 22 C C22 1SY . . . F 3 93.056 103.562 121.509 1 63.8 ? C22 1SY 401 B 1 
HETATM 23 O O23 1SY . . . F 3 92.714 104.457 120.399 1 63.8 ? O23 1SY 401 B 1 
HETATM 24 C C24 1SY . . . F 3 92.028 102.559 121.662 1 63.8 ? C24 1SY 401 B 1 
HETATM 25 C C25 1SY . . . F 3 92.609 101.259 122.039 1 63.8 ? C25 1SY 401 B 1 
HETATM 26 O O26 1SY . . . F 3 93.925 101.434 122.576 1 63.8 ? O26 1SY 401 B 1 
HETATM 27 P P27 1SY . . . F 3 95.174 100.442 122.029 1 63.8 ? P27 1SY 401 B 1 
HETATM 28 O O28 1SY . . . F 3 96.671 101.166 121.81 1 63.8 ? O28 1SY 401 B 1 
HETATM 29 O O29 1SY . . . F 3 95.336 99.388 123.002 1 63.8 ? O29 1SY 401 B 1 
HETATM 30 O O30 1SY . . . F 3 94.776 99.835 120.764 1 63.8 ? O30 1SY 401 B 1 
HETATM 31 O O31 1SY . . . F 3 91.081 103.02 122.769 1 63.8 ? O31 1SY 401 B 1 
HETATM 32 C C32 1SY . . . F 3 91.777 104.152 123.418 1 63.8 ? C32 1SY 401 B 1 
HETATM 33 N N33 1SY . . . F 3 91.953 103.88 124.823 1 63.8 ? N33 1SY 401 B 1 
HETATM 34 C C34 1SY . . . F 3 92.668 102.904 125.187 1 63.8 ? C34 1SY 401 B 1 
HETATM 35 N N35 1SY . . . F 3 92.624 102.936 126.572 1 63.8 ? N35 1SY 401 B 1 
HETATM 36 C C36 1SY . . . F 3 91.367 104.65 125.669 1 63.8 ? C36 1SY 401 B 1 
HETATM 37 C C37 1SY . . . F 3 91.729 104.136 126.888 1 63.8 ? C37 1SY 401 B 1 
HETATM 38 C C38 1SY . . . F 3 91.23 104.782 128.133 1 63.8 ? C38 1SY 401 B 1 
HETATM 39 N N39 1SY . . . F 3 90.362 105.949 128.047 1 63.8 ? N39 1SY 401 B 1 
HETATM 40 C C40 1SY . . . F 3 90.017 106.436 126.868 1 63.8 ? C40 1SY 401 B 1 
HETATM 41 N N41 1SY . . . F 3 89.16 107.599 126.776 1 63.8 ? N41 1SY 401 B 1 
HETATM 42 N N42 1SY . . . F 3 90.532 105.776 125.588 1 63.8 ? N42 1SY 401 B 1 
HETATM 43 O O43 1SY . . . F 3 91.589 104.267 129.38 1 63.8 ? O43 1SY 401 B 1 
HETATM 44 O O44 1SY . . . F 3 95.098 106.534 120.813 1 63.8 ? O44 1SY 401 B 1 
HETATM 45 O O4' 1SY . . . F 3 98.503 103.995 123.324 1 63.8 ? O4' 1SY 401 B 1 
HETATM 46 H H1 1SY . . . F 3 99.742 100.583 128.507 1 63.8 ? H1 1SY 401 B 1 
HETATM 47 H H2 1SY . . . F 3 96.669 103.189 130.695 1 63.8 ? H2 1SY 401 B 1 
HETATM 48 H H3 1SY . . . F 3 96.261 104.222 129.704 1 63.8 ? H3 1SY 401 B 1 
HETATM 49 H H4 1SY . . . F 3 96.812 104.772 124.755 1 63.8 ? H4 1SY 401 B 1 
HETATM 50 H H5 1SY . . . F 3 99.534 102.72 124.504 1 63.8 ? H5 1SY 401 B 1 
HETATM 51 H H6 1SY . . . F 3 97.416 101.256 124.479 1 63.8 ? H6 1SY 401 B 1 
HETATM 52 H H7 1SY . . . F 3 99.324 101.259 122.597 1 63.8 ? H7 1SY 401 B 1 
HETATM 53 H H8 1SY . . . F 3 96.199 102.528 123.238 1 63.8 ? H8 1SY 401 B 1 
HETATM 54 H H9 1SY . . . F 3 98.313 103.057 121.51 1 63.8 ? H9 1SY 401 B 1 
HETATM 55 H H10 1SY . . . F 3 96.056 103.838 121.148 1 63.8 ? H10 1SY 401 B 1 
HETATM 56 H H11 1SY . . . F 3 97.196 104.929 121.022 1 63.8 ? H11 1SY 401 B 1 
HETATM 57 H H13 1SY . . . F 3 93.805 103.995 123.312 1 63.8 ? H13 1SY 401 B 1 
HETATM 58 H H14 1SY . . . F 3 93.916 103.147 121.35 1 63.8 ? H14 1SY 401 B 1 
HETATM 59 H H15 1SY . . . F 3 92.991 105.24 120.578 1 63.8 ? H15 1SY 401 B 1 
HETATM 60 H H16 1SY . . . F 3 91.539 102.475 120.83 1 63.8 ? H16 1SY 401 B 1 
HETATM 61 H H17 1SY . . . F 3 92.649 100.69 121.257 1 63.8 ? H17 1SY 401 B 1 
HETATM 62 H H18 1SY . . . F 3 92.046 100.846 122.711 1 63.8 ? H18 1SY 401 B 1 
HETATM 63 H H20 1SY . . . F 3 91.25 104.956 123.305 1 63.8 ? H20 1SY 401 B 1 
HETATM 64 H H21 1SY . . . F 3 93.125 102.304 124.643 1 63.8 ? H21 1SY 401 B 1 
HETATM 65 H H22 1SY . . . F 3 89.227 108.228 127.357 1 63.8 ? H22 1SY 401 B 1 
HETATM 66 H H23 1SY . . . F 3 88.585 107.662 126.138 1 63.8 ? H23 1SY 401 B 1 
HETATM 67 H H24 1SY . . . F 3 90.311 106.091 124.821 1 63.8 ? H24 1SY 401 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           67 
#