data_7SII
#
_model_server_result.job_id            qxOQTbsIavefpLXJp8pqqg 
_model_server_result.datetime_utc      '2024-11-24 22:04:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7sii 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    7SII 
#
_exptl.entry_id    7SII 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              674.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            cGAMP 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7SII 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7SII 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
#
_chem_comp.formula           'C20 H24 N10 O13 P2' 
_chem_comp.formula_weight    674.411 
_chem_comp.id                1SY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              cGAMP 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2',3' cGAMP;c-GMP-AMP;c[G(2',5')pA(3',5')p]" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O44 P18 1SY doub 1 n n 
O19 P18 1SY sing 2 n n 
P18 O17 1SY sing 3 n n 
P18 O20 1SY sing 4 n n 
O17 C16 1SY sing 5 n n 
O4' C4' 1SY sing 6 n n 
O4' C1' 1SY sing 7 n n 
C16 C4' 1SY sing 8 n n 
C8 N7 1SY doub 9 n y 
C8 N9 1SY sing 10 n y 
N7 C5 1SY sing 11 n y 
O20 C21 1SY sing 12 n n 
N9 C1' 1SY sing 13 n n 
N9 C4 1SY sing 14 n y 
N41 C40 1SY sing 15 n n 
C4' C3' 1SY sing 16 n n 
C1' C2' 1SY sing 17 n n 
C5 C4 1SY doub 18 n y 
C5 C6 1SY sing 19 n y 
N01 C6 1SY sing 20 n n 
C4 N3 1SY sing 21 n y 
C40 N42 1SY sing 22 n n 
C40 N39 1SY doub 23 n n 
C6 N1 1SY doub 24 n y 
N42 C36 1SY sing 25 n n 
N39 C38 1SY sing 26 n n 
C21 C22 1SY sing 27 n n 
C21 C32 1SY sing 28 n n 
O23 C22 1SY sing 29 n n 
N3 C2 1SY doub 30 n y 
C3' C2' 1SY sing 31 n n 
C3' O28 1SY sing 32 n n 
N1 C2 1SY sing 33 n y 
C2' O2' 1SY sing 34 n n 
C36 C37 1SY doub 35 n y 
C36 N33 1SY sing 36 n y 
C38 O43 1SY doub 37 n n 
C38 C37 1SY sing 38 n n 
C22 C24 1SY sing 39 n n 
C32 N33 1SY sing 40 n n 
C32 O31 1SY sing 41 n n 
C37 N35 1SY sing 42 n y 
N33 C34 1SY sing 43 n y 
O28 P27 1SY sing 44 n n 
N35 C34 1SY doub 45 n y 
O31 C24 1SY sing 46 n n 
C24 C25 1SY sing 47 n n 
O26 P27 1SY sing 48 n n 
O26 C25 1SY sing 49 n n 
P27 O29 1SY doub 50 n n 
P27 O30 1SY sing 51 n n 
C2 H1 1SY sing 52 n n 
N01 H2 1SY sing 53 n n 
N01 H3 1SY sing 54 n n 
C8 H4 1SY sing 55 n n 
C1' H5 1SY sing 56 n n 
C2' H6 1SY sing 57 n n 
O2' H7 1SY sing 58 n n 
C3' H8 1SY sing 59 n n 
C4' H9 1SY sing 60 n n 
C16 H10 1SY sing 61 n n 
C16 H11 1SY sing 62 n n 
O19 H12 1SY sing 63 n n 
C21 H13 1SY sing 64 n n 
C22 H14 1SY sing 65 n n 
O23 H15 1SY sing 66 n n 
C24 H16 1SY sing 67 n n 
C25 H17 1SY sing 68 n n 
C25 H18 1SY sing 69 n n 
O30 H19 1SY sing 70 n n 
C32 H20 1SY sing 71 n n 
C34 H21 1SY sing 72 n n 
N41 H22 1SY sing 73 n n 
N41 H23 1SY sing 74 n n 
N42 H24 1SY sing 75 n n 
#
_atom_sites.entry_id                     7SII 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 9IM A 1 401 1 9IM S53 . 
F 3 1SY B 1 401 1 1SY 1SY . 
G 2 9IM C 1 401 2 9IM S53 . 
H 3 1SY D 1 401 2 1SY 1SY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 1SY . . . H 3 73.633 71.527 128.272 1 63.22 ? C2 1SY 401 D 1 
HETATM 2 N N01 1SY . . . H 3 76.089 69.289 129.907 1 63.22 ? N01 1SY 401 D 1 
HETATM 3 C C6 1SY . . . H 3 75.253 69.927 128.891 1 63.22 ? C6 1SY 401 D 1 
HETATM 4 N N1 1SY . . . H 3 74.416 70.929 129.23 1 63.22 ? N1 1SY 401 D 1 
HETATM 5 N N3 1SY . . . H 3 73.702 71.103 126.955 1 63.22 ? N3 1SY 401 D 1 
HETATM 6 C C4 1SY . . . H 3 74.524 70.12 126.627 1 63.22 ? C4 1SY 401 D 1 
HETATM 7 C C5 1SY . . . H 3 75.32 69.507 127.587 1 63.22 ? C5 1SY 401 D 1 
HETATM 8 N N7 1SY . . . H 3 76.137 68.411 126.81 1 63.22 ? N7 1SY 401 D 1 
HETATM 9 C C8 1SY . . . H 3 75.717 68.52 125.498 1 63.22 ? C8 1SY 401 D 1 
HETATM 10 N N9 1SY . . . H 3 74.834 69.485 125.532 1 63.22 ? N9 1SY 401 D 1 
HETATM 11 C C1' 1SY . . . H 3 74.2 69.865 124.339 1 63.22 ? C1' 1SY 401 D 1 
HETATM 12 C C2' 1SY . . . H 3 74.894 71.08 123.785 1 63.22 ? C2' 1SY 401 D 1 
HETATM 13 O O2' 1SY . . . H 3 73.933 71.966 123.161 1 63.22 ? O2' 1SY 401 D 1 
HETATM 14 C C3' 1SY . . . H 3 75.797 70.579 122.811 1 63.22 ? C3' 1SY 401 D 1 
HETATM 15 C C4' 1SY . . . H 3 75.099 69.425 122.206 1 63.22 ? C4' 1SY 401 D 1 
HETATM 16 C C16 1SY . . . H 3 76.073 68.471 121.638 1 63.22 ? C16 1SY 401 D 1 
HETATM 17 O O17 1SY . . . H 3 76.678 67.719 122.678 1 63.22 ? O17 1SY 401 D 1 
HETATM 18 P P18 1SY . . . H 3 77.896 66.606 122.254 1 63.22 ? P18 1SY 401 D 1 
HETATM 19 O O19 1SY . . . H 3 77.661 65.372 123.049 1 63.22 ? O19 1SY 401 D 1 
HETATM 20 O O20 1SY . . . H 3 79.482 67.078 122.477 1 63.22 ? O20 1SY 401 D 1 
HETATM 21 C C21 1SY . . . H 3 79.715 68.472 122.764 1 63.22 ? C21 1SY 401 D 1 
HETATM 22 C C22 1SY . . . H 3 79.751 69.234 121.515 1 63.22 ? C22 1SY 401 D 1 
HETATM 23 O O23 1SY . . . H 3 80.094 68.332 120.412 1 63.22 ? O23 1SY 401 D 1 
HETATM 24 C C24 1SY . . . H 3 80.777 70.24 121.66 1 63.22 ? C24 1SY 401 D 1 
HETATM 25 C C25 1SY . . . H 3 80.191 71.544 122.017 1 63.22 ? C25 1SY 401 D 1 
HETATM 26 O O26 1SY . . . H 3 78.882 71.37 122.572 1 63.22 ? O26 1SY 401 D 1 
HETATM 27 P P27 1SY . . . H 3 77.626 72.361 122.041 1 63.22 ? P27 1SY 401 D 1 
HETATM 28 O O28 1SY . . . H 3 76.131 71.632 121.818 1 63.22 ? O28 1SY 401 D 1 
HETATM 29 O O29 1SY . . . H 3 77.461 73.402 123.027 1 63.22 ? O29 1SY 401 D 1 
HETATM 30 O O30 1SY . . . H 3 78.016 72.987 120.782 1 63.22 ? O30 1SY 401 D 1 
HETATM 31 O O31 1SY . . . H 3 81.719 69.797 122.778 1 63.22 ? O31 1SY 401 D 1 
HETATM 32 C C32 1SY . . . H 3 81.03 68.661 123.429 1 63.22 ? C32 1SY 401 D 1 
HETATM 33 N N33 1SY . . . H 3 80.853 68.933 124.833 1 63.22 ? N33 1SY 401 D 1 
HETATM 34 C C34 1SY . . . H 3 80.139 69.909 125.197 1 63.22 ? C34 1SY 401 D 1 
HETATM 35 N N35 1SY . . . H 3 80.182 69.876 126.582 1 63.22 ? N35 1SY 401 D 1 
HETATM 36 C C36 1SY . . . H 3 81.439 68.163 125.68 1 63.22 ? C36 1SY 401 D 1 
HETATM 37 C C37 1SY . . . H 3 81.077 68.676 126.898 1 63.22 ? C37 1SY 401 D 1 
HETATM 38 C C38 1SY . . . H 3 81.575 68.029 128.143 1 63.22 ? C38 1SY 401 D 1 
HETATM 39 N N39 1SY . . . H 3 82.443 66.862 128.056 1 63.22 ? N39 1SY 401 D 1 
HETATM 40 C C40 1SY . . . H 3 82.788 66.375 126.878 1 63.22 ? C40 1SY 401 D 1 
HETATM 41 N N41 1SY . . . H 3 83.646 65.212 126.784 1 63.22 ? N41 1SY 401 D 1 
HETATM 42 N N42 1SY . . . H 3 82.273 67.037 125.598 1 63.22 ? N42 1SY 401 D 1 
HETATM 43 O O43 1SY . . . H 3 81.217 68.543 129.39 1 63.22 ? O43 1SY 401 D 1 
HETATM 44 O O44 1SY . . . H 3 77.722 66.268 120.825 1 63.22 ? O44 1SY 401 D 1 
HETATM 45 O O4' 1SY . . . H 3 74.306 68.798 123.329 1 63.22 ? O4' 1SY 401 D 1 
HETATM 46 H H1 1SY . . . H 3 73.055 72.216 128.505 1 63.22 ? H1 1SY 401 D 1 
HETATM 47 H H2 1SY . . . H 3 76.129 69.619 130.701 1 63.22 ? H2 1SY 401 D 1 
HETATM 48 H H3 1SY . . . H 3 76.542 68.585 129.712 1 63.22 ? H3 1SY 401 D 1 
HETATM 49 H H4 1SY . . . H 3 75.993 68.023 124.764 1 63.22 ? H4 1SY 401 D 1 
HETATM 50 H H5 1SY . . . H 3 73.268 70.069 124.508 1 63.22 ? H5 1SY 401 D 1 
HETATM 51 H H6 1SY . . . H 3 75.379 71.543 124.484 1 63.22 ? H6 1SY 401 D 1 
HETATM 52 H H7 1SY . . . H 3 73.483 71.529 122.589 1 63.22 ? H7 1SY 401 D 1 
HETATM 53 H H8 1SY . . . H 3 76.605 70.273 123.248 1 63.22 ? H8 1SY 401 D 1 
HETATM 54 H H9 1SY . . . H 3 74.497 69.735 121.514 1 63.22 ? H9 1SY 401 D 1 
HETATM 55 H H10 1SY . . . H 3 76.759 68.961 121.162 1 63.22 ? H10 1SY 401 D 1 
HETATM 56 H H11 1SY . . . H 3 75.622 67.869 121.028 1 63.22 ? H11 1SY 401 D 1 
HETATM 57 H H13 1SY . . . H 3 79.002 68.813 123.322 1 63.22 ? H13 1SY 401 D 1 
HETATM 58 H H14 1SY . . . H 3 78.89 69.647 121.353 1 63.22 ? H14 1SY 401 D 1 
HETATM 59 H H15 1SY . . . H 3 79.844 67.545 120.609 1 63.22 ? H15 1SY 401 D 1 
HETATM 60 H H16 1SY . . . H 3 81.27 70.315 120.829 1 63.22 ? H16 1SY 401 D 1 
HETATM 61 H H17 1SY . . . H 3 80.138 72.097 121.224 1 63.22 ? H17 1SY 401 D 1 
HETATM 62 H H18 1SY . . . H 3 80.758 71.975 122.674 1 63.22 ? H18 1SY 401 D 1 
HETATM 63 H H20 1SY . . . H 3 81.561 67.86 123.315 1 63.22 ? H20 1SY 401 D 1 
HETATM 64 H H21 1SY . . . H 3 79.682 70.509 124.653 1 63.22 ? H21 1SY 401 D 1 
HETATM 65 H H22 1SY . . . H 3 83.584 64.587 127.371 1 63.22 ? H22 1SY 401 D 1 
HETATM 66 H H23 1SY . . . H 3 84.213 65.146 126.142 1 63.22 ? H23 1SY 401 D 1 
HETATM 67 H H24 1SY . . . H 3 82.495 66.722 124.83 1 63.22 ? H24 1SY 401 D 1 
#
_model_server_stats.io_time_ms              112 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    63 
_model_server_stats.query_time_ms           1059 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           67 
#