data_7SIL # _model_server_result.job_id zsDj6z_B7sfqtKrIuWbUrA _model_server_result.datetime_utc '2025-03-06 08:15:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sil # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":902}' # _entry.id 7SIL # _exptl.entry_id 7SIL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 U N N ? 3 V N N ? 3 W N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1006 NAG 2 n C NAG 2 C 2 NAG A 1007 NAG 2 n D NAG 1 D 1 NAG A 1008 NAG 2 n D NAG 2 D 2 NAG A 1009 NAG 2 n E NAG 1 E 1 NAG B 1006 NAG 2 n E NAG 2 E 2 NAG B 1007 NAG 2 n F NAG 1 F 1 NAG B 1008 NAG 2 n F NAG 2 F 2 NAG B 1009 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 60 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 236 A CYS 236 1_555 A SG CYS 561 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 358 A CYS 358 1_555 A SG CYS 395 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 437 A CYS 437 1_555 A SG CYS 449 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 542 A CYS 542 1_555 A SG CYS 562 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 546 A CYS 546 1_555 A SG CYS 565 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 568 A CYS 568 1_555 A SG CYS 582 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 A SG CYS 585 A CYS 585 1_555 A SG CYS 598 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 A SG CYS 677 A CYS 677 1_555 A SG CYS 765 A CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 60 B CYS 60 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 B SG CYS 236 B CYS 236 1_555 B SG CYS 561 B CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 B SG CYS 358 B CYS 358 1_555 B SG CYS 395 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 B SG CYS 437 B CYS 437 1_555 B SG CYS 449 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 B SG CYS 542 B CYS 542 1_555 B SG CYS 562 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 B SG CYS 546 B CYS 546 1_555 B SG CYS 565 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 B SG CYS 568 B CYS 568 1_555 B SG CYS 582 B CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 B SG CYS 585 B CYS 585 1_555 B SG CYS 598 B CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 B SG CYS 677 B CYS 677 1_555 B SG CYS 765 B CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 261 A ASN 261 1_555 G C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 287 A ASN 287 1_555 H C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 468 A ASN 468 1_555 I C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 488 A ASN 488 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 A ND2 ASN 541 A ASN 541 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B ND2 ASN 261 B ASN 261 1_555 U C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 B ND2 ASN 287 B ASN 287 1_555 V C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 B ND2 ASN 468 B ASN 468 1_555 W C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale9 B ND2 ASN 488 B ASN 488 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale10 B ND2 ASN 541 B ASN 541 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A O ILE 81 A ILE 81 1_555 L CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc2 A O ASN 82 A ASN 82 1_555 L CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc3 A O SER 84 A SER 84 1_555 L CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 A O LEU 87 A LEU 87 1_555 L CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc5 A O LEU 88 A LEU 88 1_555 L CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc6 A OG1 THR 100 A THR 100 1_555 M CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc7 A OG1 THR 145 A THR 145 1_555 M CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? metalc ? metalc8 A OG SER 302 A SER 302 1_555 N CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc9 A O GLY 557 A GLY 557 1_555 O CA CA . A CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc10 B O ILE 81 B ILE 81 1_555 Z CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc11 B O ASN 82 B ASN 82 1_555 Z CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.123 ? metalc ? metalc12 B O SER 84 B SER 84 1_555 Z CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc13 B O LEU 87 B LEU 87 1_555 Z CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc14 B O LEU 88 B LEU 88 1_555 Z CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? metalc ? metalc15 B OG1 THR 100 B THR 100 1_555 AA CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc16 B OG1 THR 145 B THR 145 1_555 AA CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc17 B OG SER 302 B SER 302 1_555 BA CA CA . B CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc18 B O GLY 557 B GLY 557 1_555 CA CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 356 n n C1 O1 NAG sing 357 n n C1 O5 NAG sing 358 n n C1 H1 NAG sing 359 n n C2 C3 NAG sing 360 n n C2 N2 NAG sing 361 n n C2 H2 NAG sing 362 n n C3 C4 NAG sing 363 n n C3 O3 NAG sing 364 n n C3 H3 NAG sing 365 n n C4 C5 NAG sing 366 n n C4 O4 NAG sing 367 n n C4 H4 NAG sing 368 n n C5 C6 NAG sing 369 n n C5 O5 NAG sing 370 n n C5 H5 NAG sing 371 n n C6 O6 NAG sing 372 n n C6 H61 NAG sing 373 n n C6 H62 NAG sing 374 n n C7 C8 NAG sing 375 n n C7 N2 NAG sing 376 n n C7 O7 NAG doub 377 n n C8 H81 NAG sing 378 n n C8 H82 NAG sing 379 n n C8 H83 NAG sing 380 n n N2 HN2 NAG sing 381 n n O1 HO1 NAG sing 382 n n O3 HO3 NAG sing 383 n n O4 HO4 NAG sing 384 n n O6 HO6 NAG sing 385 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7SIL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 901 1002 NAG NAG . H 3 NAG A 1 902 1003 NAG NAG . I 3 NAG A 1 903 1004 NAG NAG . J 4 TCR A 1 904 1 TCR TCR . K 5 PO4 A 1 905 1 PO4 PO4 . L 6 CA A 1 906 1 CA CA . M 6 CA A 1 907 3 CA CA . N 6 CA A 1 908 5 CA CA . O 6 CA A 1 909 8 CA CA . P 7 9IG A 1 910 1 9IG 568 . Q 8 CLR A 1 911 2 CLR CLR . R 8 CLR A 1 912 4 CLR CLR . S 8 CLR A 1 913 5 CLR CLR . T 8 CLR A 1 914 7 CLR CLR . U 3 NAG B 1 901 1002 NAG NAG . V 3 NAG B 1 902 1003 NAG NAG . W 3 NAG B 1 903 1004 NAG NAG . X 4 TCR B 1 904 1 TCR TCR . Y 5 PO4 B 1 905 2 PO4 PO4 . Z 6 CA B 1 906 2 CA CA . AA 6 CA B 1 907 4 CA CA . BA 6 CA B 1 908 6 CA CA . CA 6 CA B 1 909 7 CA CA . DA 7 9IG B 1 910 1 9IG 568 . EA 8 CLR B 1 911 1 CLR CLR . FA 8 CLR B 1 912 3 CLR CLR . GA 8 CLR B 1 913 6 CLR CLR . HA 8 CLR B 1 914 8 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . V 3 244.672 204.529 254.731 1 43.63 ? C1 NAG 902 B 1 HETATM 2 C C2 NAG . . . V 3 246.044 203.863 254.739 1 43.63 ? C2 NAG 902 B 1 HETATM 3 C C3 NAG . . . V 3 247.088 204.818 254.176 1 43.63 ? C3 NAG 902 B 1 HETATM 4 C C4 NAG . . . V 3 246.661 205.315 252.8 1 43.63 ? C4 NAG 902 B 1 HETATM 5 C C5 NAG . . . V 3 245.248 205.896 252.847 1 43.63 ? C5 NAG 902 B 1 HETATM 6 C C6 NAG . . . V 3 244.712 206.261 251.482 1 43.63 ? C6 NAG 902 B 1 HETATM 7 C C7 NAG . . . V 3 246.444 202.138 256.435 1 43.63 ? C7 NAG 902 B 1 HETATM 8 C C8 NAG . . . V 3 246.848 201.862 257.851 1 43.63 ? C8 NAG 902 B 1 HETATM 9 N N2 NAG . . . V 3 246.413 203.426 256.075 1 43.63 ? N2 NAG 902 B 1 HETATM 10 O O3 NAG . . . V 3 248.343 204.154 254.09 1 43.63 ? O3 NAG 902 B 1 HETATM 11 O O4 NAG . . . V 3 247.562 206.323 252.359 1 43.63 ? O4 NAG 902 B 1 HETATM 12 O O5 NAG . . . V 3 244.34 204.93 253.396 1 43.63 ? O5 NAG 902 B 1 HETATM 13 O O6 NAG . . . V 3 244.02 207.502 251.512 1 43.63 ? O6 NAG 902 B 1 HETATM 14 O O7 NAG . . . V 3 246.156 201.237 255.652 1 43.63 ? O7 NAG 902 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #