data_7SIM # _model_server_result.job_id yxXJgs7j6_pK8EdBq05KEA _model_server_result.datetime_utc '2025-03-06 08:45:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":905}' # _entry.id 7SIM # _exptl.entry_id 7SIM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1006 NAG 2 n C NAG 2 C 2 NAG A 1007 NAG 2 n D NAG 1 D 1 NAG A 1008 NAG 2 n D NAG 2 D 2 NAG A 1009 NAG 2 n E NAG 1 E 1 NAG B 1006 NAG 2 n E NAG 2 E 2 NAG B 1007 NAG 2 n F NAG 1 F 1 NAG B 1008 NAG 2 n F NAG 2 F 2 NAG B 1009 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 60 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 236 A CYS 236 1_555 A SG CYS 561 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 358 A CYS 358 1_555 A SG CYS 395 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 437 A CYS 437 1_555 A SG CYS 449 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 542 A CYS 542 1_555 A SG CYS 562 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 546 A CYS 546 1_555 A SG CYS 565 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 568 A CYS 568 1_555 A SG CYS 582 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 A SG CYS 585 A CYS 585 1_555 A SG CYS 598 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 677 A CYS 677 1_555 A SG CYS 765 A CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 60 B CYS 60 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 B SG CYS 236 B CYS 236 1_555 B SG CYS 561 B CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 B SG CYS 358 B CYS 358 1_555 B SG CYS 395 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 B SG CYS 437 B CYS 437 1_555 B SG CYS 449 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 B SG CYS 542 B CYS 542 1_555 B SG CYS 562 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 B SG CYS 546 B CYS 546 1_555 B SG CYS 565 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 B SG CYS 568 B CYS 568 1_555 B SG CYS 582 B CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 B SG CYS 585 B CYS 585 1_555 B SG CYS 598 B CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf18 B SG CYS 677 B CYS 677 1_555 B SG CYS 765 B CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 468 A ASN 468 1_555 G C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 488 A ASN 488 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 541 A ASN 541 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 B ND2 ASN 468 B ASN 468 1_555 S C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 B ND2 ASN 488 B ASN 488 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 B ND2 ASN 541 B ASN 541 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A O ILE 81 A ILE 81 1_555 J CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc2 A O SER 84 A SER 84 1_555 J CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc3 A O LEU 87 A LEU 87 1_555 J CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc4 A O LEU 88 A LEU 88 1_555 J CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc5 A OG1 THR 100 A THR 100 1_555 K CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc6 A OG SER 302 A SER 302 1_555 L CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc7 A O GLY 557 A GLY 557 1_555 M CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc8 B O ILE 81 B ILE 81 1_555 V CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? metalc ? metalc9 B O SER 84 B SER 84 1_555 V CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? metalc ? metalc10 B O LEU 87 B LEU 87 1_555 V CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc11 B O LEU 88 B LEU 88 1_555 V CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc12 B OG1 THR 100 B THR 100 1_555 W CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc13 B OG SER 302 B SER 302 1_555 X CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc14 B O GLY 557 B GLY 557 1_555 Y CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7SIM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 901 1004 NAG NAG . H 4 TCR A 1 902 1 TCR TCR . I 5 PO4 A 1 903 1 PO4 PO4 . J 6 CA A 1 904 1 CA CA . K 6 CA A 1 905 3 CA CA . L 6 CA A 1 906 5 CA CA . M 6 CA A 1 907 8 CA CA . N 7 CLR A 1 908 2 CLR CLR . O 7 CLR A 1 909 4 CLR CLR . P 7 CLR A 1 910 5 CLR CLR . Q 7 CLR A 1 911 6 CLR CLR . R 7 CLR A 1 912 7 CLR CLR . S 3 NAG B 1 901 1004 NAG NAG . T 4 TCR B 1 902 1 TCR TCR . U 5 PO4 B 1 903 2 PO4 PO4 . V 6 CA B 1 904 2 CA CA . W 6 CA B 1 905 4 CA CA . X 6 CA B 1 906 6 CA CA . Y 6 CA B 1 907 7 CA CA . Z 7 CLR B 1 908 1 CLR CLR . AA 7 CLR B 1 909 3 CLR CLR . BA 7 CLR B 1 910 8 CLR CLR . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id W _atom_site.label_entity_id 6 _atom_site.Cartn_x 225.814 _atom_site.Cartn_y 216.586 _atom_site.Cartn_z 281.372 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 905 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #