data_7SJ3 # _model_server_result.job_id 2bx5vZNoaCT-0zwhtxaRrA _model_server_result.datetime_utc '2024-12-02 07:14:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7SJ3 # _exptl.entry_id 7SJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.593 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{5-[(4-ethylpiperazin-1-yl)methyl]pyridin-2-yl}-5-fluoro-4-[4-fluoro-2-methyl-1-(propan-2-yl)-1H-benzimidazol-6-yl]py rimidin-2-amine' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7SJ3 _cell.length_a 117.654 _cell.length_b 117.654 _cell.length_c 170.278 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C LEU 171 A LEU 171 1_555 A N TPO 172 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C TPO 172 A TPO 172 1_555 A N PRO 173 A PRO 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C27 H32 F2 N8' _chem_comp.formula_weight 506.593 _chem_comp.id 6ZV _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{5-[(4-ethylpiperazin-1-yl)methyl]pyridin-2-yl}-5-fluoro-4-[4-fluoro-2-methyl-1-(propan-2-yl)-1H-benzimidazol-6-yl]py rimidin-2-amine' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Abemaciclib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 N2 6ZV sing 1 n n C32 C31 6ZV sing 2 n n N2 C34 6ZV sing 3 n n N2 C1 6ZV sing 4 n n C31 N30 6ZV sing 5 n n C34 C35 6ZV sing 6 n n N30 C35 6ZV sing 7 n n N30 C14 6ZV sing 8 n n C1 C3 6ZV sing 9 n n C12 N 6ZV doub 10 n y C12 C11 6ZV sing 11 n y N C8 6ZV sing 12 n y C14 C11 6ZV sing 13 n n C11 C10 6ZV doub 14 n y C8 N7 6ZV sing 15 n n C8 C 6ZV doub 16 n y N7 C2 6ZV sing 17 n n C10 C 6ZV sing 18 n y N1 C2 6ZV doub 19 n y N1 C6 6ZV sing 20 n y C2 N3 6ZV sing 21 n y C6 C5 6ZV doub 22 n y N3 C4 6ZV doub 23 n y C4 C5 6ZV sing 24 n y C4 C16 6ZV sing 25 n n C5 F15 6ZV sing 26 n n C28 C26 6ZV sing 27 n n C27 C26 6ZV sing 28 n n C17 C16 6ZV doub 29 n y C17 C18 6ZV sing 30 n y C16 C21 6ZV sing 31 n y C26 N22 6ZV sing 32 n n C18 N22 6ZV sing 33 n y C18 C19 6ZV doub 34 n y C21 C20 6ZV doub 35 n y N22 C23 6ZV sing 36 n y C20 C19 6ZV sing 37 n y C20 F29 6ZV sing 38 n n C19 N24 6ZV sing 39 n y C23 N24 6ZV doub 40 n y C23 C25 6ZV sing 41 n n C1 H69 6ZV sing 42 n n C1 H77 6ZV sing 43 n n C3 H78 6ZV sing 44 n n C3 H79 6ZV sing 45 n n C3 H76 6ZV sing 46 n n C6 H42 6ZV sing 47 n n C10 H41 6ZV sing 48 n n C H68 6ZV sing 49 n n C17 H39 6ZV sing 50 n n C21 H40 6ZV sing 51 n n C12 H38 6ZV sing 52 n n C31 H44 6ZV sing 53 n n C31 H43 6ZV sing 54 n n C35 H65 6ZV sing 55 n n C35 H66 6ZV sing 56 n n C32 H71 6ZV sing 57 n n C32 H72 6ZV sing 58 n n C34 H74 6ZV sing 59 n n C34 H73 6ZV sing 60 n n C25 H51 6ZV sing 61 n n C25 H52 6ZV sing 62 n n C25 H53 6ZV sing 63 n n C27 H57 6ZV sing 64 n n C27 H58 6ZV sing 65 n n C27 H59 6ZV sing 66 n n C28 H62 6ZV sing 67 n n C28 H60 6ZV sing 68 n n C28 H61 6ZV sing 69 n n C14 H63 6ZV sing 70 n n C14 H64 6ZV sing 71 n n C26 H67 6ZV sing 72 n n N7 H70 6ZV sing 73 n n # _atom_sites.entry_id 7SJ3 _atom_sites.fract_transf_matrix[1][1] 0.008499 _atom_sites.fract_transf_matrix[1][2] 0.004907 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 6ZV A 1 401 1 6ZV 6ZV . D 4 HOH A 1 501 2 HOH HOH . D 4 HOH A 2 502 25 HOH HOH . D 4 HOH A 3 503 42 HOH HOH . D 4 HOH A 4 504 29 HOH HOH . D 4 HOH A 5 505 9 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 34 HOH HOH . D 4 HOH A 8 508 41 HOH HOH . D 4 HOH A 9 509 45 HOH HOH . D 4 HOH A 10 510 20 HOH HOH . D 4 HOH A 11 511 10 HOH HOH . D 4 HOH A 12 512 30 HOH HOH . D 4 HOH A 13 513 44 HOH HOH . D 4 HOH A 14 514 18 HOH HOH . D 4 HOH A 15 515 23 HOH HOH . D 4 HOH A 16 516 17 HOH HOH . E 4 HOH B 1 301 16 HOH HOH . E 4 HOH B 2 302 40 HOH HOH . E 4 HOH B 3 303 31 HOH HOH . E 4 HOH B 4 304 12 HOH HOH . E 4 HOH B 5 305 32 HOH HOH . E 4 HOH B 6 306 26 HOH HOH . E 4 HOH B 7 307 14 HOH HOH . E 4 HOH B 8 308 39 HOH HOH . E 4 HOH B 9 309 8 HOH HOH . E 4 HOH B 10 310 4 HOH HOH . E 4 HOH B 11 311 28 HOH HOH . E 4 HOH B 12 312 11 HOH HOH . E 4 HOH B 13 313 5 HOH HOH . E 4 HOH B 14 314 19 HOH HOH . E 4 HOH B 15 315 35 HOH HOH . E 4 HOH B 16 316 22 HOH HOH . E 4 HOH B 17 317 3 HOH HOH . E 4 HOH B 18 318 1 HOH HOH . E 4 HOH B 19 319 21 HOH HOH . E 4 HOH B 20 320 7 HOH HOH . E 4 HOH B 21 321 43 HOH HOH . E 4 HOH B 22 322 15 HOH HOH . E 4 HOH B 23 323 24 HOH HOH . E 4 HOH B 24 324 36 HOH HOH . E 4 HOH B 25 325 37 HOH HOH . E 4 HOH B 26 326 27 HOH HOH . E 4 HOH B 27 327 33 HOH HOH . E 4 HOH B 28 328 38 HOH HOH . E 4 HOH B 29 329 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6ZV . . . C 3 5.674 -41.568 10.29 1 93.37 ? C1 6ZV 401 A 1 HETATM 2 C C2 6ZV . . . C 3 14.277 -36.657 13.3 1 64.12 ? C2 6ZV 401 A 1 HETATM 3 C C3 6ZV . . . C 3 5.968 -42.981 10.812 1 90.4 ? C3 6ZV 401 A 1 HETATM 4 C C4 6ZV . . . C 3 16.173 -37.279 12.081 1 64.91 ? C4 6ZV 401 A 1 HETATM 5 C C5 6ZV . . . C 3 16.964 -36.482 12.936 1 67.56 ? C5 6ZV 401 A 1 HETATM 6 C C6 6ZV . . . C 3 16.317 -35.78 13.988 1 64.52 ? C6 6ZV 401 A 1 HETATM 7 N N2 6ZV . . . C 3 5.516 -40.634 11.452 1 99.02 ? N2 6ZV 401 A 1 HETATM 8 C C10 6ZV . . . C 3 10.915 -37.792 10.667 1 68.99 ? C10 6ZV 401 A 1 HETATM 9 C C 6ZV . . . C 3 12 -37.535 11.483 1 70.23 ? C 6ZV 401 A 1 HETATM 10 C C17 6ZV . . . C 3 15.76 -38.53 10.042 1 63.98 ? C17 6ZV 401 A 1 HETATM 11 C C21 6ZV . . . C 3 18.053 -38.343 10.822 1 64.95 ? C21 6ZV 401 A 1 HETATM 12 C C12 6ZV . . . C 3 9.5 -36.882 12.355 1 71.44 ? C12 6ZV 401 A 1 HETATM 13 C C16 6ZV . . . C 3 16.679 -38.069 10.951 1 64.86 ? C16 6ZV 401 A 1 HETATM 14 C C11 6ZV . . . C 3 9.633 -37.468 11.09 1 66.8 ? C11 6ZV 401 A 1 HETATM 15 C C19 6ZV . . . C 3 17.616 -39.575 8.821 1 68.89 ? C19 6ZV 401 A 1 HETATM 16 C C18 6ZV . . . C 3 16.238 -39.286 8.97 1 59.9 ? C18 6ZV 401 A 1 HETATM 17 C C20 6ZV . . . C 3 18.519 -39.087 9.764 1 60.34 ? C20 6ZV 401 A 1 HETATM 18 C C8 6ZV . . . C 3 11.783 -36.943 12.741 1 70.82 ? C8 6ZV 401 A 1 HETATM 19 C C23 6ZV . . . C 3 16.643 -40.535 7.128 1 72.43 ? C23 6ZV 401 A 1 HETATM 20 C C31 6ZV . . . C 3 6.182 -38.626 10.145 1 86.9 ? C31 6ZV 401 A 1 HETATM 21 C C35 6ZV . . . C 3 7.886 -39.855 11.351 1 98.72 ? C35 6ZV 401 A 1 HETATM 22 C C32 6ZV . . . C 3 5.07 -39.278 10.993 1 91.45 ? C32 6ZV 401 A 1 HETATM 23 C C34 6ZV . . . C 3 6.795 -40.515 12.231 1 101.92 ? C34 6ZV 401 A 1 HETATM 24 C C25 6ZV . . . C 3 16.398 -41.309 5.888 1 63.29 ? C25 6ZV 401 A 1 HETATM 25 C C27 6ZV . . . C 3 13.626 -38.492 7.448 1 53.78 ? C27 6ZV 401 A 1 HETATM 26 C C28 6ZV . . . C 3 13.42 -40.691 8.642 1 49.96 ? C28 6ZV 401 A 1 HETATM 27 C C14 6ZV . . . C 3 8.454 -37.746 10.207 1 78.35 ? C14 6ZV 401 A 1 HETATM 28 C C26 6ZV . . . C 3 14.177 -39.919 7.565 1 47.4 ? C26 6ZV 401 A 1 HETATM 29 N N 6ZV . . . C 3 10.533 -36.614 13.188 1 71.43 ? N 6ZV 401 A 1 HETATM 30 N N1 6ZV . . . C 3 14.993 -35.851 14.191 1 61.41 ? N1 6ZV 401 A 1 HETATM 31 N N24 6ZV . . . C 3 17.857 -40.348 7.67 1 72.06 ? N24 6ZV 401 A 1 HETATM 32 N N3 6ZV . . . C 3 14.827 -37.378 12.25 1 70.92 ? N3 6ZV 401 A 1 HETATM 33 N N22 6ZV . . . C 3 15.612 -39.907 7.873 1 62.59 ? N22 6ZV 401 A 1 HETATM 34 N N30 6ZV . . . C 3 7.41 -38.492 10.974 1 89.76 ? N30 6ZV 401 A 1 HETATM 35 N N7 6ZV . . . C 3 12.897 -36.682 13.582 1 62.19 ? N7 6ZV 401 A 1 HETATM 36 F F29 6ZV . . . C 3 19.81 -39.349 9.638 1 73.37 ? F29 6ZV 401 A 1 HETATM 37 F F15 6ZV . . . C 3 18.269 -36.363 12.798 1 62.92 ? F15 6ZV 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #