data_7SJB # _model_server_result.job_id H3cRCQhk-pXjXORWKeg02g _model_server_result.datetime_utc '2024-11-14 14:42:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sjb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 7SJB # _exptl.entry_id 7SJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SJB _cell.length_a 60.716 _cell.length_b 67.532 _cell.length_c 67.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 G FE HEM . B HEM 201 1_555 K O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 168 n n CHA C4D HEM doub 169 n n CHA HHA HEM sing 170 n n CHB C4A HEM sing 171 n n CHB C1B HEM doub 172 n n CHB HHB HEM sing 173 n n CHC C4B HEM sing 174 n n CHC C1C HEM doub 175 n n CHC HHC HEM sing 176 n n CHD C4C HEM doub 177 n n CHD C1D HEM sing 178 n n CHD HHD HEM sing 179 n n C1A C2A HEM doub 180 n y C1A NA HEM sing 181 n y C2A C3A HEM sing 182 n y C2A CAA HEM sing 183 n n C3A C4A HEM doub 184 n y C3A CMA HEM sing 185 n n C4A NA HEM sing 186 n y CMA HMA HEM sing 187 n n CMA HMAA HEM sing 188 n n CMA HMAB HEM sing 189 n n CAA CBA HEM sing 190 n n CAA HAA HEM sing 191 n n CAA HAAA HEM sing 192 n n CBA CGA HEM sing 193 n n CBA HBA HEM sing 194 n n CBA HBAA HEM sing 195 n n CGA O1A HEM doub 196 n n CGA O2A HEM sing 197 n n C1B C2B HEM sing 198 n n C1B NB HEM sing 199 n n C2B C3B HEM doub 200 n n C2B CMB HEM sing 201 n n C3B C4B HEM sing 202 n n C3B CAB HEM sing 203 n n C4B NB HEM doub 204 n n CMB HMB HEM sing 205 n n CMB HMBA HEM sing 206 n n CMB HMBB HEM sing 207 n n CAB CBB HEM doub 208 n n CAB HAB HEM sing 209 n n CBB HBB HEM sing 210 n n CBB HBBA HEM sing 211 n n C1C C2C HEM sing 212 n y C1C NC HEM sing 213 n y C2C C3C HEM doub 214 n y C2C CMC HEM sing 215 n n C3C C4C HEM sing 216 n y C3C CAC HEM sing 217 n n C4C NC HEM sing 218 n y CMC HMC HEM sing 219 n n CMC HMCA HEM sing 220 n n CMC HMCB HEM sing 221 n n CAC CBC HEM doub 222 n n CAC HAC HEM sing 223 n n CBC HBC HEM sing 224 n n CBC HBCA HEM sing 225 n n C1D C2D HEM sing 226 n n C1D ND HEM doub 227 n n C2D C3D HEM doub 228 n n C2D CMD HEM sing 229 n n C3D C4D HEM sing 230 n n C3D CAD HEM sing 231 n n C4D ND HEM sing 232 n n CMD HMD HEM sing 233 n n CMD HMDA HEM sing 234 n n CMD HMDB HEM sing 235 n n CAD CBD HEM sing 236 n n CAD HAD HEM sing 237 n n CAD HADA HEM sing 238 n n CBD CGD HEM sing 239 n n CBD HBD HEM sing 240 n n CBD HBDA HEM sing 241 n n CGD O1D HEM doub 242 n n CGD O2D HEM sing 243 n n O2A H2A HEM sing 244 n n O2D H2D HEM sing 245 n n FE NA HEM sing 246 n n FE NB HEM sing 247 n n FE NC HEM sing 248 n n FE ND HEM sing 249 n n # _atom_sites.entry_id 7SJB _atom_sites.fract_transf_matrix[1][1] 0.01647 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 9MI A 1 202 140 9MI AT2 . E 4 SO4 A 1 203 1 SO4 SO4 . F 4 SO4 A 1 204 2 SO4 SO4 . G 2 HEM B 1 201 139 HEM HEM . H 3 9MI B 1 202 140 9MI AT2 . I 5 GOL B 1 203 141 GOL GOL . J 6 HOH A 1 301 107 HOH HOH . J 6 HOH A 2 302 94 HOH HOH . J 6 HOH A 3 303 104 HOH HOH . J 6 HOH A 4 304 56 HOH HOH . J 6 HOH A 5 305 103 HOH HOH . J 6 HOH A 6 306 38 HOH HOH . J 6 HOH A 7 307 25 HOH HOH . J 6 HOH A 8 308 63 HOH HOH . J 6 HOH A 9 309 33 HOH HOH . J 6 HOH A 10 310 28 HOH HOH . J 6 HOH A 11 311 11 HOH HOH . J 6 HOH A 12 312 92 HOH HOH . J 6 HOH A 13 313 6 HOH HOH . J 6 HOH A 14 314 29 HOH HOH . J 6 HOH A 15 315 44 HOH HOH . J 6 HOH A 16 316 64 HOH HOH . J 6 HOH A 17 317 66 HOH HOH . J 6 HOH A 18 318 62 HOH HOH . J 6 HOH A 19 319 2 HOH HOH . J 6 HOH A 20 320 32 HOH HOH . J 6 HOH A 21 321 46 HOH HOH . J 6 HOH A 22 322 19 HOH HOH . J 6 HOH A 23 323 1 HOH HOH . J 6 HOH A 24 324 35 HOH HOH . J 6 HOH A 25 325 47 HOH HOH . J 6 HOH A 26 326 7 HOH HOH . J 6 HOH A 27 327 13 HOH HOH . J 6 HOH A 28 328 37 HOH HOH . J 6 HOH A 29 329 41 HOH HOH . J 6 HOH A 30 330 15 HOH HOH . J 6 HOH A 31 331 27 HOH HOH . J 6 HOH A 32 332 83 HOH HOH . J 6 HOH A 33 333 100 HOH HOH . J 6 HOH A 34 334 5 HOH HOH . J 6 HOH A 35 335 20 HOH HOH . J 6 HOH A 36 336 45 HOH HOH . J 6 HOH A 37 337 102 HOH HOH . J 6 HOH A 38 338 73 HOH HOH . J 6 HOH A 39 339 88 HOH HOH . J 6 HOH A 40 340 80 HOH HOH . J 6 HOH A 41 341 68 HOH HOH . J 6 HOH A 42 342 105 HOH HOH . J 6 HOH A 43 343 39 HOH HOH . J 6 HOH A 44 344 3 HOH HOH . J 6 HOH A 45 345 81 HOH HOH . J 6 HOH A 46 346 65 HOH HOH . J 6 HOH A 47 347 77 HOH HOH . J 6 HOH A 48 348 101 HOH HOH . J 6 HOH A 49 349 24 HOH HOH . J 6 HOH A 50 350 52 HOH HOH . J 6 HOH A 51 351 26 HOH HOH . J 6 HOH A 52 352 23 HOH HOH . J 6 HOH A 53 353 76 HOH HOH . J 6 HOH A 54 354 82 HOH HOH . J 6 HOH A 55 355 99 HOH HOH . J 6 HOH A 56 356 61 HOH HOH . J 6 HOH A 57 357 71 HOH HOH . K 6 HOH B 1 301 89 HOH HOH . K 6 HOH B 2 302 8 HOH HOH . K 6 HOH B 3 303 75 HOH HOH . K 6 HOH B 4 304 67 HOH HOH . K 6 HOH B 5 305 55 HOH HOH . K 6 HOH B 6 306 51 HOH HOH . K 6 HOH B 7 307 106 HOH HOH . K 6 HOH B 8 308 90 HOH HOH . K 6 HOH B 9 309 53 HOH HOH . K 6 HOH B 10 310 31 HOH HOH . K 6 HOH B 11 311 34 HOH HOH . K 6 HOH B 12 312 49 HOH HOH . K 6 HOH B 13 313 60 HOH HOH . K 6 HOH B 14 314 17 HOH HOH . K 6 HOH B 15 315 97 HOH HOH . K 6 HOH B 16 316 4 HOH HOH . K 6 HOH B 17 317 18 HOH HOH . K 6 HOH B 18 318 30 HOH HOH . K 6 HOH B 19 319 22 HOH HOH . K 6 HOH B 20 320 9 HOH HOH . K 6 HOH B 21 321 40 HOH HOH . K 6 HOH B 22 322 16 HOH HOH . K 6 HOH B 23 323 78 HOH HOH . K 6 HOH B 24 324 21 HOH HOH . K 6 HOH B 25 325 57 HOH HOH . K 6 HOH B 26 326 58 HOH HOH . K 6 HOH B 27 327 59 HOH HOH . K 6 HOH B 28 328 36 HOH HOH . K 6 HOH B 29 329 14 HOH HOH . K 6 HOH B 30 330 95 HOH HOH . K 6 HOH B 31 331 50 HOH HOH . K 6 HOH B 32 332 79 HOH HOH . K 6 HOH B 33 333 12 HOH HOH . K 6 HOH B 34 334 86 HOH HOH . K 6 HOH B 35 335 42 HOH HOH . K 6 HOH B 36 336 108 HOH HOH . K 6 HOH B 37 337 54 HOH HOH . K 6 HOH B 38 338 87 HOH HOH . K 6 HOH B 39 339 48 HOH HOH . K 6 HOH B 40 340 70 HOH HOH . K 6 HOH B 41 341 69 HOH HOH . K 6 HOH B 42 342 10 HOH HOH . K 6 HOH B 43 343 98 HOH HOH . K 6 HOH B 44 344 43 HOH HOH . K 6 HOH B 45 345 85 HOH HOH . K 6 HOH B 46 346 72 HOH HOH . K 6 HOH B 47 347 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 5.791 6.038 -11.777 1 23.53 0 CHA HEM 201 B 1 HETATM 2 C CHB HEM . . . G 2 4.82 7.37 -16.477 1 30.63 0 CHB HEM 201 B 1 HETATM 3 C CHC HEM . . . G 2 8.88 5.335 -18.093 1 31.86 0 CHC HEM 201 B 1 HETATM 4 C CHD HEM . . . G 2 10.099 4.372 -13.488 1 32.4 0 CHD HEM 201 B 1 HETATM 5 C C1A HEM . . . G 2 5.225 6.507 -12.992 1 30.43 0 C1A HEM 201 B 1 HETATM 6 C C2A HEM . . . G 2 3.927 7.013 -13.03 1 29.61 0 C2A HEM 201 B 1 HETATM 7 C C3A HEM . . . G 2 3.614 7.39 -14.289 1 28.01 0 C3A HEM 201 B 1 HETATM 8 C C4A HEM . . . G 2 4.763 7.111 -15.089 1 29.56 0 C4A HEM 201 B 1 HETATM 9 C CMA HEM . . . G 2 2.283 8.003 -14.75 1 30.04 0 CMA HEM 201 B 1 HETATM 10 C CAA HEM . . . G 2 2.985 7.107 -11.836 1 35.04 0 CAA HEM 201 B 1 HETATM 11 C CBA HEM . . . G 2 2.418 5.707 -11.584 1 42.98 0 CBA HEM 201 B 1 HETATM 12 C CGA HEM . . . G 2 1.559 5.715 -10.349 1 51.99 0 CGA HEM 201 B 1 HETATM 13 O O1A HEM . . . G 2 0.354 5.422 -10.443 1 56.13 0 O1A HEM 201 B 1 HETATM 14 O O2A HEM . . . G 2 2.064 5.996 -9.238 1 59.1 0 O2A HEM 201 B 1 HETATM 15 C C1B HEM . . . G 2 5.819 6.904 -17.318 1 26.37 0 C1B HEM 201 B 1 HETATM 16 C C2B HEM . . . G 2 5.77 7.022 -18.734 1 30.3 0 C2B HEM 201 B 1 HETATM 17 C C3B HEM . . . G 2 6.9 6.439 -19.238 1 33.09 0 C3B HEM 201 B 1 HETATM 18 C C4B HEM . . . G 2 7.661 6.011 -18.031 1 29.5 0 C4B HEM 201 B 1 HETATM 19 C CMB HEM . . . G 2 4.661 7.624 -19.531 1 31.07 0 CMB HEM 201 B 1 HETATM 20 C CAB HEM . . . G 2 7.395 6.3 -20.616 1 35.4 0 CAB HEM 201 B 1 HETATM 21 C CBB HEM . . . G 2 6.867 6.859 -21.708 1 35.17 0 CBB HEM 201 B 1 HETATM 22 C C1C HEM . . . G 2 9.583 4.848 -16.992 1 29.98 0 C1C HEM 201 B 1 HETATM 23 C C2C HEM . . . G 2 10.748 4.057 -17.039 1 32.54 0 C2C HEM 201 B 1 HETATM 24 C C3C HEM . . . G 2 11.131 3.804 -15.725 1 32.09 0 C3C HEM 201 B 1 HETATM 25 C C4C HEM . . . G 2 10.15 4.433 -14.881 1 31.52 0 C4C HEM 201 B 1 HETATM 26 C CMC HEM . . . G 2 11.443 3.648 -18.28 1 33.21 0 CMC HEM 201 B 1 HETATM 27 C CAC HEM . . . G 2 12.242 2.949 -15.189 1 36.31 0 CAC HEM 201 B 1 HETATM 28 C CBC HEM . . . G 2 12.857 2.038 -15.93 1 39.17 0 CBC HEM 201 B 1 HETATM 29 C C1D HEM . . . G 2 9.001 4.754 -12.712 1 29.07 0 C1D HEM 201 B 1 HETATM 30 C C2D HEM . . . G 2 8.954 4.507 -11.261 1 33.23 0 C2D HEM 201 B 1 HETATM 31 C C3D HEM . . . G 2 7.781 4.952 -10.787 1 31.87 0 C3D HEM 201 B 1 HETATM 32 C C4D HEM . . . G 2 7.086 5.526 -11.97 1 29.79 0 C4D HEM 201 B 1 HETATM 33 C CMD HEM . . . G 2 10.017 3.848 -10.404 1 34.4 0 CMD HEM 201 B 1 HETATM 34 C CAD HEM . . . G 2 7.29 4.926 -9.332 1 38.89 0 CAD HEM 201 B 1 HETATM 35 C CBD HEM . . . G 2 7.247 3.554 -8.645 1 41.36 0 CBD HEM 201 B 1 HETATM 36 C CGD HEM . . . G 2 5.941 2.84 -8.893 1 50.99 0 CGD HEM 201 B 1 HETATM 37 O O1D HEM . . . G 2 5.059 3.415 -9.596 1 55.82 0 O1D HEM 201 B 1 HETATM 38 O O2D HEM . . . G 2 5.72 1.694 -8.426 0.2 46.04 0 O2D HEM 201 B 1 HETATM 39 N NA HEM . . . G 2 5.76 6.574 -14.293 1 29.4 0 NA HEM 201 B 1 HETATM 40 N NB HEM . . . G 2 6.943 6.314 -16.938 1 33.43 0 NB HEM 201 B 1 HETATM 41 N NC HEM . . . G 2 9.244 5.048 -15.71 1 28.77 0 NC HEM 201 B 1 HETATM 42 N ND HEM . . . G 2 7.856 5.364 -13.145 1 30.94 0 ND HEM 201 B 1 HETATM 43 FE FE HEM . . . G 2 7.527 5.919 -14.962 1 32.38 0 FE HEM 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #