data_7SJC # _model_server_result.job_id b-z9LcZDvIvnRd9U1QYa9Q _model_server_result.datetime_utc '2024-10-19 15:34:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7SJC # _exptl.entry_id 7SJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SJC _cell.length_a 59.817 _cell.length_b 67.606 _cell.length_c 67.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 I FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 168 n n CHA C4D HEM doub 169 n n CHA HHA HEM sing 170 n n CHB C4A HEM sing 171 n n CHB C1B HEM doub 172 n n CHB HHB HEM sing 173 n n CHC C4B HEM sing 174 n n CHC C1C HEM doub 175 n n CHC HHC HEM sing 176 n n CHD C4C HEM doub 177 n n CHD C1D HEM sing 178 n n CHD HHD HEM sing 179 n n C1A C2A HEM doub 180 n y C1A NA HEM sing 181 n y C2A C3A HEM sing 182 n y C2A CAA HEM sing 183 n n C3A C4A HEM doub 184 n y C3A CMA HEM sing 185 n n C4A NA HEM sing 186 n y CMA HMA HEM sing 187 n n CMA HMAA HEM sing 188 n n CMA HMAB HEM sing 189 n n CAA CBA HEM sing 190 n n CAA HAA HEM sing 191 n n CAA HAAA HEM sing 192 n n CBA CGA HEM sing 193 n n CBA HBA HEM sing 194 n n CBA HBAA HEM sing 195 n n CGA O1A HEM doub 196 n n CGA O2A HEM sing 197 n n C1B C2B HEM sing 198 n n C1B NB HEM sing 199 n n C2B C3B HEM doub 200 n n C2B CMB HEM sing 201 n n C3B C4B HEM sing 202 n n C3B CAB HEM sing 203 n n C4B NB HEM doub 204 n n CMB HMB HEM sing 205 n n CMB HMBA HEM sing 206 n n CMB HMBB HEM sing 207 n n CAB CBB HEM doub 208 n n CAB HAB HEM sing 209 n n CBB HBB HEM sing 210 n n CBB HBBA HEM sing 211 n n C1C C2C HEM sing 212 n y C1C NC HEM sing 213 n y C2C C3C HEM doub 214 n y C2C CMC HEM sing 215 n n C3C C4C HEM sing 216 n y C3C CAC HEM sing 217 n n C4C NC HEM sing 218 n y CMC HMC HEM sing 219 n n CMC HMCA HEM sing 220 n n CMC HMCB HEM sing 221 n n CAC CBC HEM doub 222 n n CAC HAC HEM sing 223 n n CBC HBC HEM sing 224 n n CBC HBCA HEM sing 225 n n C1D C2D HEM sing 226 n n C1D ND HEM doub 227 n n C2D C3D HEM doub 228 n n C2D CMD HEM sing 229 n n C3D C4D HEM sing 230 n n C3D CAD HEM sing 231 n n C4D ND HEM sing 232 n n CMD HMD HEM sing 233 n n CMD HMDA HEM sing 234 n n CMD HMDB HEM sing 235 n n CAD CBD HEM sing 236 n n CAD HAD HEM sing 237 n n CAD HADA HEM sing 238 n n CBD CGD HEM sing 239 n n CBD HBD HEM sing 240 n n CBD HBDA HEM sing 241 n n CGD O1D HEM doub 242 n n CGD O2D HEM sing 243 n n O2A H2A HEM sing 244 n n O2D H2D HEM sing 245 n n FE NA HEM sing 246 n n FE NB HEM sing 247 n n FE NC HEM sing 248 n n FE ND HEM sing 249 n n # _atom_sites.entry_id 7SJC _atom_sites.fract_transf_matrix[1][1] 0.016718 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 GOL A 1 202 141 GOL GOL . E 3 GOL A 1 203 142 GOL GOL . F 4 9NI A 1 204 143 9NI GT1 . G 5 SO4 A 1 205 1 SO4 SO4 . H 5 SO4 A 1 206 2 SO4 SO4 . I 2 HEM B 1 201 139 HEM HEM . J 3 GOL B 1 202 141 GOL GOL . K 4 9NI B 1 203 142 9NI GT1 . L 6 HOH A 1 301 78 HOH HOH . L 6 HOH A 2 302 128 HOH HOH . L 6 HOH A 3 303 68 HOH HOH . L 6 HOH A 4 304 94 HOH HOH . L 6 HOH A 5 305 118 HOH HOH . L 6 HOH A 6 306 131 HOH HOH . L 6 HOH A 7 307 1 HOH HOH . L 6 HOH A 8 308 90 HOH HOH . L 6 HOH A 9 309 21 HOH HOH . L 6 HOH A 10 310 123 HOH HOH . L 6 HOH A 11 311 42 HOH HOH . L 6 HOH A 12 312 113 HOH HOH . L 6 HOH A 13 313 63 HOH HOH . L 6 HOH A 14 314 15 HOH HOH . L 6 HOH A 15 315 50 HOH HOH . L 6 HOH A 16 316 116 HOH HOH . L 6 HOH A 17 317 59 HOH HOH . L 6 HOH A 18 318 37 HOH HOH . L 6 HOH A 19 319 54 HOH HOH . L 6 HOH A 20 320 3 HOH HOH . L 6 HOH A 21 321 22 HOH HOH . L 6 HOH A 22 322 28 HOH HOH . L 6 HOH A 23 323 27 HOH HOH . L 6 HOH A 24 324 89 HOH HOH . L 6 HOH A 25 325 20 HOH HOH . L 6 HOH A 26 326 7 HOH HOH . L 6 HOH A 27 327 73 HOH HOH . L 6 HOH A 28 328 74 HOH HOH . L 6 HOH A 29 329 13 HOH HOH . L 6 HOH A 30 330 112 HOH HOH . L 6 HOH A 31 331 14 HOH HOH . L 6 HOH A 32 332 81 HOH HOH . L 6 HOH A 33 333 56 HOH HOH . L 6 HOH A 34 334 19 HOH HOH . L 6 HOH A 35 335 85 HOH HOH . L 6 HOH A 36 336 84 HOH HOH . L 6 HOH A 37 337 34 HOH HOH . L 6 HOH A 38 338 86 HOH HOH . L 6 HOH A 39 339 66 HOH HOH . L 6 HOH A 40 340 91 HOH HOH . L 6 HOH A 41 341 8 HOH HOH . L 6 HOH A 42 342 57 HOH HOH . L 6 HOH A 43 343 18 HOH HOH . L 6 HOH A 44 344 87 HOH HOH . L 6 HOH A 45 345 40 HOH HOH . L 6 HOH A 46 346 122 HOH HOH . L 6 HOH A 47 347 31 HOH HOH . L 6 HOH A 48 348 80 HOH HOH . L 6 HOH A 49 349 5 HOH HOH . L 6 HOH A 50 350 16 HOH HOH . L 6 HOH A 51 351 41 HOH HOH . L 6 HOH A 52 352 101 HOH HOH . L 6 HOH A 53 353 77 HOH HOH . L 6 HOH A 54 354 104 HOH HOH . L 6 HOH A 55 355 82 HOH HOH . L 6 HOH A 56 356 127 HOH HOH . L 6 HOH A 57 357 97 HOH HOH . L 6 HOH A 58 358 96 HOH HOH . L 6 HOH A 59 359 126 HOH HOH . L 6 HOH A 60 360 44 HOH HOH . L 6 HOH A 61 361 124 HOH HOH . L 6 HOH A 62 362 117 HOH HOH . L 6 HOH A 63 363 72 HOH HOH . L 6 HOH A 64 364 121 HOH HOH . L 6 HOH A 65 365 32 HOH HOH . L 6 HOH A 66 366 92 HOH HOH . M 6 HOH B 1 301 75 HOH HOH . M 6 HOH B 2 302 132 HOH HOH . M 6 HOH B 3 303 129 HOH HOH . M 6 HOH B 4 304 99 HOH HOH . M 6 HOH B 5 305 39 HOH HOH . M 6 HOH B 6 306 51 HOH HOH . M 6 HOH B 7 307 103 HOH HOH . M 6 HOH B 8 308 30 HOH HOH . M 6 HOH B 9 309 36 HOH HOH . M 6 HOH B 10 310 65 HOH HOH . M 6 HOH B 11 311 46 HOH HOH . M 6 HOH B 12 312 67 HOH HOH . M 6 HOH B 13 313 58 HOH HOH . M 6 HOH B 14 314 25 HOH HOH . M 6 HOH B 15 315 45 HOH HOH . M 6 HOH B 16 316 23 HOH HOH . M 6 HOH B 17 317 43 HOH HOH . M 6 HOH B 18 318 111 HOH HOH . M 6 HOH B 19 319 114 HOH HOH . M 6 HOH B 20 320 24 HOH HOH . M 6 HOH B 21 321 52 HOH HOH . M 6 HOH B 22 322 2 HOH HOH . M 6 HOH B 23 323 11 HOH HOH . M 6 HOH B 24 324 26 HOH HOH . M 6 HOH B 25 325 88 HOH HOH . M 6 HOH B 26 326 69 HOH HOH . M 6 HOH B 27 327 10 HOH HOH . M 6 HOH B 28 328 6 HOH HOH . M 6 HOH B 29 329 71 HOH HOH . M 6 HOH B 30 330 130 HOH HOH . M 6 HOH B 31 331 76 HOH HOH . M 6 HOH B 32 332 102 HOH HOH . M 6 HOH B 33 333 9 HOH HOH . M 6 HOH B 34 334 93 HOH HOH . M 6 HOH B 35 335 100 HOH HOH . M 6 HOH B 36 336 108 HOH HOH . M 6 HOH B 37 337 38 HOH HOH . M 6 HOH B 38 338 12 HOH HOH . M 6 HOH B 39 339 55 HOH HOH . M 6 HOH B 40 340 17 HOH HOH . M 6 HOH B 41 341 115 HOH HOH . M 6 HOH B 42 342 62 HOH HOH . M 6 HOH B 43 343 49 HOH HOH . M 6 HOH B 44 344 61 HOH HOH . M 6 HOH B 45 345 79 HOH HOH . M 6 HOH B 46 346 64 HOH HOH . M 6 HOH B 47 347 29 HOH HOH . M 6 HOH B 48 348 110 HOH HOH . M 6 HOH B 49 349 125 HOH HOH . M 6 HOH B 50 350 70 HOH HOH . M 6 HOH B 51 351 33 HOH HOH . M 6 HOH B 52 352 53 HOH HOH . M 6 HOH B 53 353 60 HOH HOH . M 6 HOH B 54 354 48 HOH HOH . M 6 HOH B 55 355 120 HOH HOH . M 6 HOH B 56 356 83 HOH HOH . M 6 HOH B 57 357 95 HOH HOH . M 6 HOH B 58 358 35 HOH HOH . M 6 HOH B 59 359 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 4.951 6.302 -11.568 1 31.36 0 CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . C 2 3.694 7.406 -16.141 1 29.55 0 CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . C 2 7.801 5.489 -17.717 1 32.32 0 CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . C 2 9.16 4.642 -13.134 1 36.41 0 CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . C 2 4.242 6.696 -12.685 1 31.02 0 C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . C 2 2.909 7.154 -12.678 1 30.61 0 C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . C 2 2.56 7.46 -13.956 1 28.03 0 C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . C 2 3.672 7.221 -14.768 1 29.04 0 C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . C 2 1.218 7.977 -14.418 1 28.61 0 CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . C 2 1.981 7.271 -11.483 1 33.41 0 CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . C 2 1.302 5.906 -11.253 1 38.62 0 CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . C 2 0.601 5.798 -9.912 1 47.57 0 CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . C 2 -0.342 4.978 -9.767 1 52.77 0 O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . C 2 0.981 6.498 -8.94 1 56.09 0 O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . C 2 4.715 6.984 -16.978 1 27.66 0 C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . C 2 4.633 7.013 -18.416 1 28.82 0 C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . C 2 5.796 6.453 -18.896 1 29.97 0 C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . C 2 6.563 6.103 -17.668 1 27.59 0 C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . C 2 3.506 7.572 -19.245 1 30.8 0 CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . C 2 6.329 6.303 -20.262 1 27.68 0 CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . C 2 5.839 6.912 -21.341 1 32.67 0 CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . C 2 8.512 5.082 -16.591 1 31.44 0 C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . C 2 9.759 4.415 -16.622 1 32.82 0 C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . C 2 10.141 4.174 -15.323 1 32.89 0 C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . C 2 9.112 4.687 -14.499 1 35.17 0 C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . C 2 10.529 4.086 -17.874 1 35.14 0 CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . C 2 11.36 3.495 -14.832 1 36.79 0 CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . C 2 12.206 2.84 -15.631 1 37.26 0 CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . C 2 8.084 5.051 -12.361 1 33.69 0 C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . C 2 8.122 4.837 -10.917 1 35.11 0 C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . C 2 6.942 5.271 -10.465 1 32.96 0 C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . C 2 6.207 5.777 -11.66 1 31.09 0 C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . C 2 9.254 4.246 -10.08 1 36.15 0 CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . C 2 6.516 5.301 -9.005 1 38.34 0 CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . C 2 6.535 3.979 -8.262 1 41.99 0 CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . C 2 5.249 3.273 -8.536 1 48.57 0 CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . C 2 4.361 3.814 -9.268 1 51.16 0 O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . C 2 5.072 2.136 -8.031 0.2 47.77 0 O2D HEM 201 A 1 HETATM 39 N NA HEM . . . C 2 4.703 6.744 -13.976 1 30.15 0 NA HEM 201 A 1 HETATM 40 N NB HEM . . . C 2 5.839 6.4 -16.583 1 29.14 0 NB HEM 201 A 1 HETATM 41 N NC HEM . . . C 2 8.124 5.215 -15.307 1 31.85 0 NC HEM 201 A 1 HETATM 42 N ND HEM . . . C 2 6.917 5.601 -12.783 1 32.5 0 ND HEM 201 A 1 HETATM 43 FE FE HEM . . . C 2 6.449 6.134 -14.562 1 35.52 0 FE HEM 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #