data_7SJD # _model_server_result.job_id 320sWuremKs0pa0gsDIABw _model_server_result.datetime_utc '2024-10-10 10:19:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7SJD # _exptl.entry_id 7SJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SJD _cell.length_a 59.711 _cell.length_b 67.574 _cell.length_c 67.856 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 H FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 168 n n CHA C4D HEM doub 169 n n CHA HHA HEM sing 170 n n CHB C4A HEM sing 171 n n CHB C1B HEM doub 172 n n CHB HHB HEM sing 173 n n CHC C4B HEM sing 174 n n CHC C1C HEM doub 175 n n CHC HHC HEM sing 176 n n CHD C4C HEM doub 177 n n CHD C1D HEM sing 178 n n CHD HHD HEM sing 179 n n C1A C2A HEM doub 180 n y C1A NA HEM sing 181 n y C2A C3A HEM sing 182 n y C2A CAA HEM sing 183 n n C3A C4A HEM doub 184 n y C3A CMA HEM sing 185 n n C4A NA HEM sing 186 n y CMA HMA HEM sing 187 n n CMA HMAA HEM sing 188 n n CMA HMAB HEM sing 189 n n CAA CBA HEM sing 190 n n CAA HAA HEM sing 191 n n CAA HAAA HEM sing 192 n n CBA CGA HEM sing 193 n n CBA HBA HEM sing 194 n n CBA HBAA HEM sing 195 n n CGA O1A HEM doub 196 n n CGA O2A HEM sing 197 n n C1B C2B HEM sing 198 n n C1B NB HEM sing 199 n n C2B C3B HEM doub 200 n n C2B CMB HEM sing 201 n n C3B C4B HEM sing 202 n n C3B CAB HEM sing 203 n n C4B NB HEM doub 204 n n CMB HMB HEM sing 205 n n CMB HMBA HEM sing 206 n n CMB HMBB HEM sing 207 n n CAB CBB HEM doub 208 n n CAB HAB HEM sing 209 n n CBB HBB HEM sing 210 n n CBB HBBA HEM sing 211 n n C1C C2C HEM sing 212 n y C1C NC HEM sing 213 n y C2C C3C HEM doub 214 n y C2C CMC HEM sing 215 n n C3C C4C HEM sing 216 n y C3C CAC HEM sing 217 n n C4C NC HEM sing 218 n y CMC HMC HEM sing 219 n n CMC HMCA HEM sing 220 n n CMC HMCB HEM sing 221 n n CAC CBC HEM doub 222 n n CAC HAC HEM sing 223 n n CBC HBC HEM sing 224 n n CBC HBCA HEM sing 225 n n C1D C2D HEM sing 226 n n C1D ND HEM doub 227 n n C2D C3D HEM doub 228 n n C2D CMD HEM sing 229 n n C3D C4D HEM sing 230 n n C3D CAD HEM sing 231 n n C4D ND HEM sing 232 n n CMD HMD HEM sing 233 n n CMD HMDA HEM sing 234 n n CMD HMDB HEM sing 235 n n CAD CBD HEM sing 236 n n CAD HAD HEM sing 237 n n CAD HADA HEM sing 238 n n CBD CGD HEM sing 239 n n CBD HBD HEM sing 240 n n CBD HBDA HEM sing 241 n n CGD O1D HEM doub 242 n n CGD O2D HEM sing 243 n n O2A H2A HEM sing 244 n n O2D H2D HEM sing 245 n n FE NA HEM sing 246 n n FE NB HEM sing 247 n n FE NC HEM sing 248 n n FE ND HEM sing 249 n n # _atom_sites.entry_id 7SJD _atom_sites.fract_transf_matrix[1][1] 0.016747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 GOL A 1 202 141 GOL GOL . E 4 9LR A 1 203 142 9LR TN2 . F 5 SO4 A 1 204 1 SO4 SO4 . G 5 SO4 A 1 205 2 SO4 SO4 . H 2 HEM B 1 201 139 HEM HEM . I 3 GOL B 1 202 141 GOL GOL . J 3 GOL B 1 203 142 GOL GOL . K 4 9LR B 1 204 143 9LR TN2 . L 6 HOH A 1 301 117 HOH HOH . L 6 HOH A 2 302 1 HOH HOH . L 6 HOH A 3 303 89 HOH HOH . L 6 HOH A 4 304 6 HOH HOH . L 6 HOH A 5 305 90 HOH HOH . L 6 HOH A 6 306 2 HOH HOH . L 6 HOH A 7 307 44 HOH HOH . L 6 HOH A 8 308 46 HOH HOH . L 6 HOH A 9 309 99 HOH HOH . L 6 HOH A 10 310 32 HOH HOH . L 6 HOH A 11 311 39 HOH HOH . L 6 HOH A 12 312 112 HOH HOH . L 6 HOH A 13 313 53 HOH HOH . L 6 HOH A 14 314 12 HOH HOH . L 6 HOH A 15 315 3 HOH HOH . L 6 HOH A 16 316 40 HOH HOH . L 6 HOH A 17 317 21 HOH HOH . L 6 HOH A 18 318 38 HOH HOH . L 6 HOH A 19 319 74 HOH HOH . L 6 HOH A 20 320 24 HOH HOH . L 6 HOH A 21 321 5 HOH HOH . L 6 HOH A 22 322 56 HOH HOH . L 6 HOH A 23 323 4 HOH HOH . L 6 HOH A 24 324 96 HOH HOH . L 6 HOH A 25 325 22 HOH HOH . L 6 HOH A 26 326 18 HOH HOH . L 6 HOH A 27 327 15 HOH HOH . L 6 HOH A 28 328 102 HOH HOH . L 6 HOH A 29 329 66 HOH HOH . L 6 HOH A 30 330 10 HOH HOH . L 6 HOH A 31 331 20 HOH HOH . L 6 HOH A 32 332 119 HOH HOH . L 6 HOH A 33 333 16 HOH HOH . L 6 HOH A 34 334 72 HOH HOH . L 6 HOH A 35 335 98 HOH HOH . L 6 HOH A 36 336 73 HOH HOH . L 6 HOH A 37 337 108 HOH HOH . L 6 HOH A 38 338 31 HOH HOH . L 6 HOH A 39 339 116 HOH HOH . L 6 HOH A 40 340 60 HOH HOH . L 6 HOH A 41 341 19 HOH HOH . L 6 HOH A 42 342 91 HOH HOH . L 6 HOH A 43 343 68 HOH HOH . L 6 HOH A 44 344 54 HOH HOH . L 6 HOH A 45 345 118 HOH HOH . L 6 HOH A 46 346 94 HOH HOH . L 6 HOH A 47 347 80 HOH HOH . L 6 HOH A 48 348 70 HOH HOH . L 6 HOH A 49 349 81 HOH HOH . L 6 HOH A 50 350 92 HOH HOH . L 6 HOH A 51 351 115 HOH HOH . L 6 HOH A 52 352 114 HOH HOH . L 6 HOH A 53 353 88 HOH HOH . M 6 HOH B 1 301 63 HOH HOH . M 6 HOH B 2 302 41 HOH HOH . M 6 HOH B 3 303 76 HOH HOH . M 6 HOH B 4 304 47 HOH HOH . M 6 HOH B 5 305 82 HOH HOH . M 6 HOH B 6 306 110 HOH HOH . M 6 HOH B 7 307 48 HOH HOH . M 6 HOH B 8 308 13 HOH HOH . M 6 HOH B 9 309 7 HOH HOH . M 6 HOH B 10 310 35 HOH HOH . M 6 HOH B 11 311 71 HOH HOH . M 6 HOH B 12 312 37 HOH HOH . M 6 HOH B 13 313 51 HOH HOH . M 6 HOH B 14 314 95 HOH HOH . M 6 HOH B 15 315 62 HOH HOH . M 6 HOH B 16 316 17 HOH HOH . M 6 HOH B 17 317 33 HOH HOH . M 6 HOH B 18 318 61 HOH HOH . M 6 HOH B 19 319 55 HOH HOH . M 6 HOH B 20 320 27 HOH HOH . M 6 HOH B 21 321 59 HOH HOH . M 6 HOH B 22 322 30 HOH HOH . M 6 HOH B 23 323 111 HOH HOH . M 6 HOH B 24 324 43 HOH HOH . M 6 HOH B 25 325 79 HOH HOH . M 6 HOH B 26 326 106 HOH HOH . M 6 HOH B 27 327 42 HOH HOH . M 6 HOH B 28 328 77 HOH HOH . M 6 HOH B 29 329 23 HOH HOH . M 6 HOH B 30 330 14 HOH HOH . M 6 HOH B 31 331 93 HOH HOH . M 6 HOH B 32 332 9 HOH HOH . M 6 HOH B 33 333 57 HOH HOH . M 6 HOH B 34 334 64 HOH HOH . M 6 HOH B 35 335 67 HOH HOH . M 6 HOH B 36 336 25 HOH HOH . M 6 HOH B 37 337 11 HOH HOH . M 6 HOH B 38 338 100 HOH HOH . M 6 HOH B 39 339 75 HOH HOH . M 6 HOH B 40 340 83 HOH HOH . M 6 HOH B 41 341 28 HOH HOH . M 6 HOH B 42 342 36 HOH HOH . M 6 HOH B 43 343 65 HOH HOH . M 6 HOH B 44 344 58 HOH HOH . M 6 HOH B 45 345 107 HOH HOH . M 6 HOH B 46 346 26 HOH HOH . M 6 HOH B 47 347 69 HOH HOH . M 6 HOH B 48 348 45 HOH HOH . M 6 HOH B 49 349 29 HOH HOH . M 6 HOH B 50 350 103 HOH HOH . M 6 HOH B 51 351 78 HOH HOH . M 6 HOH B 52 352 34 HOH HOH . M 6 HOH B 53 353 49 HOH HOH . M 6 HOH B 54 354 50 HOH HOH . M 6 HOH B 55 355 84 HOH HOH . M 6 HOH B 56 356 87 HOH HOH . M 6 HOH B 57 357 86 HOH HOH . M 6 HOH B 58 358 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 4.943 -6.45 11.538 1 34.59 0 CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . C 2 3.634 -7.373 16.122 1 32.76 0 CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . C 2 7.866 -5.537 17.649 1 34.1 0 CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . C 2 9.087 -4.611 13.085 1 36.24 0 CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . C 2 4.215 -6.812 12.669 1 34.44 0 C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . C 2 2.858 -7.214 12.659 1 35.11 0 C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . C 2 2.478 -7.475 13.929 1 32.67 0 C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . C 2 3.598 -7.234 14.748 1 32.92 0 C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . C 2 1.104 -7.957 14.354 1 33.04 0 CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . C 2 1.957 -7.344 11.455 1 40.65 0 CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . C 2 1.127 -6.057 11.266 1 46.94 0 CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . C 2 0.654 -5.845 9.841 1 56.06 0 CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . C 2 -0.246 -4.991 9.629 1 54.6 0 O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . C 2 1.154 -6.5 8.881 1 63.15 0 O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . C 2 4.696 -6.952 16.924 1 32.11 0 C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . C 2 4.647 -7.003 18.356 1 31.47 0 C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . C 2 5.826 -6.463 18.817 1 32.91 0 C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . C 2 6.589 -6.106 17.601 1 33.67 0 C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . C 2 3.497 -7.513 19.18 1 31.61 0 CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . C 2 6.347 -6.336 20.191 1 31.23 0 CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . C 2 5.847 -6.968 21.249 1 36.28 0 CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . C 2 8.559 -5.113 16.524 1 35.59 0 C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . C 2 9.774 -4.402 16.534 1 37.28 0 C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . C 2 10.121 -4.138 15.213 1 36.98 0 C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . C 2 9.074 -4.666 14.435 1 38.68 0 C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . C 2 10.544 -4.041 17.785 1 39 0 CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . C 2 11.287 -3.414 14.646 1 39.8 0 CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . C 2 12.163 -2.744 15.387 1 41.82 0 CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . C 2 8.023 -5.064 12.345 1 34.26 0 C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . C 2 8.086 -4.865 10.9 1 36.23 0 C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . C 2 6.926 -5.347 10.435 1 39.27 0 C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . C 2 6.188 -5.869 11.627 1 36.75 0 C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . C 2 9.214 -4.233 10.103 1 37.76 0 CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . C 2 6.523 -5.369 8.974 1 45.66 0 CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . C 2 6.723 -4.028 8.261 1 50.56 0 CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . C 2 5.407 -3.546 7.73 1 60.58 0 CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . C 2 4.488 -3.36 8.555 1 68.29 0 O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . C 2 5.237 -3.334 6.505 0.2 59.87 0 O2D HEM 201 A 1 HETATM 39 N NA HEM . . . C 2 4.654 -6.827 13.97 1 34.84 0 NA HEM 201 A 1 HETATM 40 N NB HEM . . . C 2 5.841 -6.414 16.533 1 33.89 0 NB HEM 201 A 1 HETATM 41 N NC HEM . . . C 2 8.131 -5.25 15.244 1 34.93 0 NC HEM 201 A 1 HETATM 42 N ND HEM . . . C 2 6.876 -5.644 12.763 1 33.15 0 ND HEM 201 A 1 HETATM 43 FE FE HEM . . . C 2 6.411 -6.164 14.532 1 37.64 0 FE HEM 201 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #