data_7SJG # _model_server_result.job_id zjbgT7XX863XSN80FQ7AAw _model_server_result.datetime_utc '2024-11-23 21:52:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sjg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":206}' # _entry.id 7SJG # _exptl.entry_id 7SJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.217 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-5-(propan-2-yl)benzene-1,4-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SJG _cell.length_a 58.358 _cell.length_b 67.565 _cell.length_c 67.825 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,S 1 1 B,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 73 A CYS 73 1_555 H C8 9IX . A 9IX 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.708 ? covale ? covale2 B SG CYS 73 B CYS 73 1_555 R C8 9IX . B 9IX 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? # _chem_comp.formula 'C10 H14 O2' _chem_comp.formula_weight 166.217 _chem_comp.id 9IX _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-5-(propan-2-yl)benzene-1,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Thymoquinone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 9IX sing 1 n n O C5 9IX sing 2 n n C4 C5 9IX doub 3 n y C4 C3 9IX sing 4 n y C1 C2 9IX sing 5 n n C1 C3 9IX sing 6 n n C5 C6 9IX sing 7 n y C3 C9 9IX doub 8 n y C6 C7 9IX sing 9 n n C6 C8 9IX doub 10 n y C9 C8 9IX sing 11 n y C9 O1 9IX sing 12 n n C1 H1 9IX sing 13 n n C2 H2 9IX sing 14 n n C2 H3 9IX sing 15 n n C2 H4 9IX sing 16 n n C4 H5 9IX sing 17 n n C7 H6 9IX sing 18 n n C7 H7 9IX sing 19 n n C7 H8 9IX sing 20 n n C8 H9 9IX sing 21 n n O1 H10 9IX sing 22 n n C H11 9IX sing 23 n n C H12 9IX sing 24 n n C H13 9IX sing 25 n n O H14 9IX sing 26 n n # _atom_sites.entry_id 7SJG _atom_sites.fract_transf_matrix[1][1] 0.017136 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 GOL A 1 202 142 GOL GOL . E 3 GOL A 1 203 143 GOL GOL . F 3 GOL A 1 204 144 GOL GOL . G 4 9J9 A 1 205 148 9J9 TQ2 . H 5 9IX A 1 206 149 9IX TH1 . I 4 9J9 A 1 207 150 9J9 TQ2 . J 4 9J9 A 1 208 151 9J9 TQ2 . K 6 SO4 A 1 209 1 SO4 SO4 . L 6 SO4 A 1 210 2 SO4 SO4 . M 2 HEM B 1 201 139 HEM HEM . N 3 GOL B 1 202 141 GOL GOL . O 3 GOL B 1 203 142 GOL GOL . P 3 GOL B 1 204 144 GOL GOL . Q 4 9J9 B 1 205 147 9J9 TQ2 . R 5 9IX B 1 206 148 9IX TH1 . S 7 HOH A 1 301 23 HOH HOH . S 7 HOH A 2 302 223 HOH HOH . S 7 HOH A 3 303 107 HOH HOH . S 7 HOH A 4 304 225 HOH HOH . S 7 HOH A 5 305 208 HOH HOH . S 7 HOH A 6 306 65 HOH HOH . S 7 HOH A 7 307 147 HOH HOH . S 7 HOH A 8 308 115 HOH HOH . S 7 HOH A 9 309 209 HOH HOH . S 7 HOH A 10 310 163 HOH HOH . S 7 HOH A 11 311 224 HOH HOH . S 7 HOH A 12 312 2 HOH HOH . S 7 HOH A 13 313 153 HOH HOH . S 7 HOH A 14 314 128 HOH HOH . S 7 HOH A 15 315 54 HOH HOH . S 7 HOH A 16 316 204 HOH HOH . S 7 HOH A 17 317 101 HOH HOH . S 7 HOH A 18 318 233 HOH HOH . S 7 HOH A 19 319 157 HOH HOH . S 7 HOH A 20 320 103 HOH HOH . S 7 HOH A 21 321 26 HOH HOH . S 7 HOH A 22 322 11 HOH HOH . S 7 HOH A 23 323 228 HOH HOH . S 7 HOH A 24 324 94 HOH HOH . S 7 HOH A 25 325 211 HOH HOH . S 7 HOH A 26 326 123 HOH HOH . S 7 HOH A 27 327 118 HOH HOH . S 7 HOH A 28 328 146 HOH HOH . S 7 HOH A 29 329 100 HOH HOH . S 7 HOH A 30 330 214 HOH HOH . S 7 HOH A 31 331 215 HOH HOH . S 7 HOH A 32 332 99 HOH HOH . S 7 HOH A 33 333 166 HOH HOH . S 7 HOH A 34 334 38 HOH HOH . S 7 HOH A 35 335 91 HOH HOH . S 7 HOH A 36 336 49 HOH HOH . S 7 HOH A 37 337 132 HOH HOH . S 7 HOH A 38 338 44 HOH HOH . S 7 HOH A 39 339 10 HOH HOH . S 7 HOH A 40 340 1 HOH HOH . S 7 HOH A 41 341 66 HOH HOH . S 7 HOH A 42 342 237 HOH HOH . S 7 HOH A 43 343 113 HOH HOH . S 7 HOH A 44 344 22 HOH HOH . S 7 HOH A 45 345 98 HOH HOH . S 7 HOH A 46 346 227 HOH HOH . S 7 HOH A 47 347 150 HOH HOH . S 7 HOH A 48 348 45 HOH HOH . S 7 HOH A 49 349 173 HOH HOH . S 7 HOH A 50 350 4 HOH HOH . S 7 HOH A 51 351 109 HOH HOH . S 7 HOH A 52 352 206 HOH HOH . S 7 HOH A 53 353 8 HOH HOH . S 7 HOH A 54 354 133 HOH HOH . S 7 HOH A 55 355 46 HOH HOH . S 7 HOH A 56 356 48 HOH HOH . S 7 HOH A 57 357 37 HOH HOH . S 7 HOH A 58 358 190 HOH HOH . S 7 HOH A 59 359 43 HOH HOH . S 7 HOH A 60 360 85 HOH HOH . S 7 HOH A 61 361 63 HOH HOH . S 7 HOH A 62 362 130 HOH HOH . S 7 HOH A 63 363 203 HOH HOH . S 7 HOH A 64 364 13 HOH HOH . S 7 HOH A 65 365 57 HOH HOH . S 7 HOH A 66 366 20 HOH HOH . S 7 HOH A 67 367 185 HOH HOH . S 7 HOH A 68 368 16 HOH HOH . S 7 HOH A 69 369 60 HOH HOH . S 7 HOH A 70 370 35 HOH HOH . S 7 HOH A 71 371 226 HOH HOH . S 7 HOH A 72 372 140 HOH HOH . S 7 HOH A 73 373 72 HOH HOH . S 7 HOH A 74 374 29 HOH HOH . S 7 HOH A 75 375 125 HOH HOH . S 7 HOH A 76 376 58 HOH HOH . S 7 HOH A 77 377 169 HOH HOH . S 7 HOH A 78 378 31 HOH HOH . S 7 HOH A 79 379 116 HOH HOH . S 7 HOH A 80 380 119 HOH HOH . S 7 HOH A 81 381 71 HOH HOH . S 7 HOH A 82 382 239 HOH HOH . S 7 HOH A 83 383 156 HOH HOH . S 7 HOH A 84 384 110 HOH HOH . S 7 HOH A 85 385 229 HOH HOH . S 7 HOH A 86 386 152 HOH HOH . S 7 HOH A 87 387 14 HOH HOH . S 7 HOH A 88 388 207 HOH HOH . S 7 HOH A 89 389 9 HOH HOH . S 7 HOH A 90 390 47 HOH HOH . S 7 HOH A 91 391 155 HOH HOH . S 7 HOH A 92 392 90 HOH HOH . S 7 HOH A 93 393 148 HOH HOH . S 7 HOH A 94 394 64 HOH HOH . S 7 HOH A 95 395 230 HOH HOH . S 7 HOH A 96 396 232 HOH HOH . S 7 HOH A 97 397 160 HOH HOH . S 7 HOH A 98 398 96 HOH HOH . S 7 HOH A 99 399 136 HOH HOH . S 7 HOH A 100 400 67 HOH HOH . S 7 HOH A 101 401 238 HOH HOH . S 7 HOH A 102 402 129 HOH HOH . S 7 HOH A 103 403 149 HOH HOH . S 7 HOH A 104 404 82 HOH HOH . S 7 HOH A 105 405 79 HOH HOH . S 7 HOH A 106 406 216 HOH HOH . S 7 HOH A 107 407 139 HOH HOH . S 7 HOH A 108 408 70 HOH HOH . S 7 HOH A 109 409 168 HOH HOH . S 7 HOH A 110 410 159 HOH HOH . S 7 HOH A 111 411 62 HOH HOH . S 7 HOH A 112 412 135 HOH HOH . S 7 HOH A 113 413 122 HOH HOH . S 7 HOH A 114 414 41 HOH HOH . S 7 HOH A 115 415 154 HOH HOH . T 7 HOH B 1 301 181 HOH HOH . T 7 HOH B 2 302 191 HOH HOH . T 7 HOH B 3 303 105 HOH HOH . T 7 HOH B 4 304 199 HOH HOH . T 7 HOH B 5 305 189 HOH HOH . T 7 HOH B 6 306 205 HOH HOH . T 7 HOH B 7 307 217 HOH HOH . T 7 HOH B 8 308 77 HOH HOH . T 7 HOH B 9 309 197 HOH HOH . T 7 HOH B 10 310 164 HOH HOH . T 7 HOH B 11 311 210 HOH HOH . T 7 HOH B 12 312 73 HOH HOH . T 7 HOH B 13 313 89 HOH HOH . T 7 HOH B 14 314 120 HOH HOH . T 7 HOH B 15 315 33 HOH HOH . T 7 HOH B 16 316 53 HOH HOH . T 7 HOH B 17 317 126 HOH HOH . T 7 HOH B 18 318 127 HOH HOH . T 7 HOH B 19 319 131 HOH HOH . T 7 HOH B 20 320 7 HOH HOH . T 7 HOH B 21 321 198 HOH HOH . T 7 HOH B 22 322 134 HOH HOH . T 7 HOH B 23 323 95 HOH HOH . T 7 HOH B 24 324 21 HOH HOH . T 7 HOH B 25 325 200 HOH HOH . T 7 HOH B 26 326 192 HOH HOH . T 7 HOH B 27 327 30 HOH HOH . T 7 HOH B 28 328 81 HOH HOH . T 7 HOH B 29 329 137 HOH HOH . T 7 HOH B 30 330 28 HOH HOH . T 7 HOH B 31 331 40 HOH HOH . T 7 HOH B 32 332 92 HOH HOH . T 7 HOH B 33 333 25 HOH HOH . T 7 HOH B 34 334 74 HOH HOH . T 7 HOH B 35 335 165 HOH HOH . T 7 HOH B 36 336 61 HOH HOH . T 7 HOH B 37 337 32 HOH HOH . T 7 HOH B 38 338 59 HOH HOH . T 7 HOH B 39 339 195 HOH HOH . T 7 HOH B 40 340 15 HOH HOH . T 7 HOH B 41 341 104 HOH HOH . T 7 HOH B 42 342 106 HOH HOH . T 7 HOH B 43 343 212 HOH HOH . T 7 HOH B 44 344 145 HOH HOH . T 7 HOH B 45 345 12 HOH HOH . T 7 HOH B 46 346 39 HOH HOH . T 7 HOH B 47 347 3 HOH HOH . T 7 HOH B 48 348 108 HOH HOH . T 7 HOH B 49 349 80 HOH HOH . T 7 HOH B 50 350 236 HOH HOH . T 7 HOH B 51 351 24 HOH HOH . T 7 HOH B 52 352 5 HOH HOH . T 7 HOH B 53 353 50 HOH HOH . T 7 HOH B 54 354 235 HOH HOH . T 7 HOH B 55 355 234 HOH HOH . T 7 HOH B 56 356 19 HOH HOH . T 7 HOH B 57 357 18 HOH HOH . T 7 HOH B 58 358 201 HOH HOH . T 7 HOH B 59 359 86 HOH HOH . T 7 HOH B 60 360 6 HOH HOH . T 7 HOH B 61 361 231 HOH HOH . T 7 HOH B 62 362 27 HOH HOH . T 7 HOH B 63 363 68 HOH HOH . T 7 HOH B 64 364 124 HOH HOH . T 7 HOH B 65 365 194 HOH HOH . T 7 HOH B 66 366 193 HOH HOH . T 7 HOH B 67 367 42 HOH HOH . T 7 HOH B 68 368 51 HOH HOH . T 7 HOH B 69 369 78 HOH HOH . T 7 HOH B 70 370 84 HOH HOH . T 7 HOH B 71 371 76 HOH HOH . T 7 HOH B 72 372 141 HOH HOH . T 7 HOH B 73 373 52 HOH HOH . T 7 HOH B 74 374 88 HOH HOH . T 7 HOH B 75 375 187 HOH HOH . T 7 HOH B 76 376 69 HOH HOH . T 7 HOH B 77 377 17 HOH HOH . T 7 HOH B 78 378 182 HOH HOH . T 7 HOH B 79 379 34 HOH HOH . T 7 HOH B 80 380 179 HOH HOH . T 7 HOH B 81 381 75 HOH HOH . T 7 HOH B 82 382 117 HOH HOH . T 7 HOH B 83 383 167 HOH HOH . T 7 HOH B 84 384 114 HOH HOH . T 7 HOH B 85 385 213 HOH HOH . T 7 HOH B 86 386 162 HOH HOH . T 7 HOH B 87 387 121 HOH HOH . T 7 HOH B 88 388 170 HOH HOH . T 7 HOH B 89 389 196 HOH HOH . T 7 HOH B 90 390 151 HOH HOH . T 7 HOH B 91 391 158 HOH HOH . T 7 HOH B 92 392 83 HOH HOH . T 7 HOH B 93 393 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9IX . . . R 5 -37.487 -7.588 -5.421 1 32.42 0 C1 9IX 206 B 1 HETATM 2 C C2 9IX . . . R 5 -37.604 -6.04 -5.289 1 35.54 0 C2 9IX 206 B 1 HETATM 3 C C3 9IX . . . R 5 -36.175 -8.145 -4.864 1 32.92 0 C3 9IX 206 B 1 HETATM 4 C C4 9IX . . . R 5 -35.133 -8.521 -5.688 1 34.69 0 C4 9IX 206 B 1 HETATM 5 C C5 9IX . . . R 5 -33.902 -8.888 -5.141 1 30.31 0 C5 9IX 206 B 1 HETATM 6 C C6 9IX . . . R 5 -33.696 -8.941 -3.76 1 24.52 0 C6 9IX 206 B 1 HETATM 7 C C7 9IX . . . R 5 -32.324 -9.199 -3.196 1 25.43 0 C7 9IX 206 B 1 HETATM 8 C C8 9IX . . . R 5 -34.761 -8.622 -2.938 1 22.05 0 C8 9IX 206 B 1 HETATM 9 C C9 9IX . . . R 5 -35.978 -8.231 -3.484 1 25.87 0 C9 9IX 206 B 1 HETATM 10 O O1 9IX . . . R 5 -37.022 -7.919 -2.749 1 25.48 0 O1 9IX 206 B 1 HETATM 11 C C 9IX . . . R 5 -37.683 -7.959 -6.882 1 40.77 0 C 9IX 206 B 1 HETATM 12 O O 9IX . . . R 5 -32.846 -9.216 -5.907 1 45.25 0 O 9IX 206 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 636 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #