data_7SJH # _model_server_result.job_id MA1fLZ9yV3UjknwpIyrvXw _model_server_result.datetime_utc '2024-11-24 00:03:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sjh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":201}' # _entry.id 7SJH # _exptl.entry_id 7SJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SJH _cell.length_a 59.839 _cell.length_b 67.375 _cell.length_c 67.857 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,O 1 1 B,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 K FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc3 K FE HEM . B HEM 201 1_555 P O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 168 n n CHA C4D HEM doub 169 n n CHA HHA HEM sing 170 n n CHB C4A HEM sing 171 n n CHB C1B HEM doub 172 n n CHB HHB HEM sing 173 n n CHC C4B HEM sing 174 n n CHC C1C HEM doub 175 n n CHC HHC HEM sing 176 n n CHD C4C HEM doub 177 n n CHD C1D HEM sing 178 n n CHD HHD HEM sing 179 n n C1A C2A HEM doub 180 n y C1A NA HEM sing 181 n y C2A C3A HEM sing 182 n y C2A CAA HEM sing 183 n n C3A C4A HEM doub 184 n y C3A CMA HEM sing 185 n n C4A NA HEM sing 186 n y CMA HMA HEM sing 187 n n CMA HMAA HEM sing 188 n n CMA HMAB HEM sing 189 n n CAA CBA HEM sing 190 n n CAA HAA HEM sing 191 n n CAA HAAA HEM sing 192 n n CBA CGA HEM sing 193 n n CBA HBA HEM sing 194 n n CBA HBAA HEM sing 195 n n CGA O1A HEM doub 196 n n CGA O2A HEM sing 197 n n C1B C2B HEM sing 198 n n C1B NB HEM sing 199 n n C2B C3B HEM doub 200 n n C2B CMB HEM sing 201 n n C3B C4B HEM sing 202 n n C3B CAB HEM sing 203 n n C4B NB HEM doub 204 n n CMB HMB HEM sing 205 n n CMB HMBA HEM sing 206 n n CMB HMBB HEM sing 207 n n CAB CBB HEM doub 208 n n CAB HAB HEM sing 209 n n CBB HBB HEM sing 210 n n CBB HBBA HEM sing 211 n n C1C C2C HEM sing 212 n y C1C NC HEM sing 213 n y C2C C3C HEM doub 214 n y C2C CMC HEM sing 215 n n C3C C4C HEM sing 216 n y C3C CAC HEM sing 217 n n C4C NC HEM sing 218 n y CMC HMC HEM sing 219 n n CMC HMCA HEM sing 220 n n CMC HMCB HEM sing 221 n n CAC CBC HEM doub 222 n n CAC HAC HEM sing 223 n n CBC HBC HEM sing 224 n n CBC HBCA HEM sing 225 n n C1D C2D HEM sing 226 n n C1D ND HEM doub 227 n n C2D C3D HEM doub 228 n n C2D CMD HEM sing 229 n n C3D C4D HEM sing 230 n n C3D CAD HEM sing 231 n n C4D ND HEM sing 232 n n CMD HMD HEM sing 233 n n CMD HMDA HEM sing 234 n n CMD HMDB HEM sing 235 n n CAD CBD HEM sing 236 n n CAD HAD HEM sing 237 n n CAD HADA HEM sing 238 n n CBD CGD HEM sing 239 n n CBD HBD HEM sing 240 n n CBD HBDA HEM sing 241 n n CGD O1D HEM doub 242 n n CGD O2D HEM sing 243 n n O2A H2A HEM sing 244 n n O2D H2D HEM sing 245 n n FE NA HEM sing 246 n n FE NB HEM sing 247 n n FE NC HEM sing 248 n n FE ND HEM sing 249 n n # _atom_sites.entry_id 7SJH _atom_sites.fract_transf_matrix[1][1] 0.016712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 9IU A 1 202 140 9IU SL2 . E 4 GOL A 1 203 141 GOL GOL . F 4 GOL A 1 204 142 GOL GOL . G 4 GOL A 1 205 143 GOL GOL . H 4 GOL A 1 206 144 GOL GOL . I 5 SO4 A 1 207 1 SO4 SO4 . J 5 SO4 A 1 208 2 SO4 SO4 . K 2 HEM B 1 201 139 HEM HEM . L 3 9IU B 1 202 140 9IU SL2 . M 4 GOL B 1 203 141 GOL GOL . N 4 GOL B 1 204 142 GOL GOL . O 6 HOH A 1 301 1 HOH HOH . O 6 HOH A 2 302 91 HOH HOH . O 6 HOH A 3 303 100 HOH HOH . O 6 HOH A 4 304 92 HOH HOH . O 6 HOH A 5 305 68 HOH HOH . O 6 HOH A 6 306 78 HOH HOH . O 6 HOH A 7 307 52 HOH HOH . O 6 HOH A 8 308 49 HOH HOH . O 6 HOH A 9 309 25 HOH HOH . O 6 HOH A 10 310 99 HOH HOH . O 6 HOH A 11 311 75 HOH HOH . O 6 HOH A 12 312 72 HOH HOH . O 6 HOH A 13 313 96 HOH HOH . O 6 HOH A 14 314 15 HOH HOH . O 6 HOH A 15 315 14 HOH HOH . O 6 HOH A 16 316 7 HOH HOH . O 6 HOH A 17 317 84 HOH HOH . O 6 HOH A 18 318 10 HOH HOH . O 6 HOH A 19 319 70 HOH HOH . O 6 HOH A 20 320 31 HOH HOH . O 6 HOH A 21 321 45 HOH HOH . O 6 HOH A 22 322 18 HOH HOH . O 6 HOH A 23 323 102 HOH HOH . O 6 HOH A 24 324 77 HOH HOH . O 6 HOH A 25 325 110 HOH HOH . O 6 HOH A 26 326 57 HOH HOH . O 6 HOH A 27 327 19 HOH HOH . O 6 HOH A 28 328 94 HOH HOH . O 6 HOH A 29 329 23 HOH HOH . O 6 HOH A 30 330 69 HOH HOH . O 6 HOH A 31 331 89 HOH HOH . O 6 HOH A 32 332 81 HOH HOH . O 6 HOH A 33 333 13 HOH HOH . O 6 HOH A 34 334 104 HOH HOH . O 6 HOH A 35 335 24 HOH HOH . O 6 HOH A 36 336 103 HOH HOH . O 6 HOH A 37 337 86 HOH HOH . O 6 HOH A 38 338 98 HOH HOH . O 6 HOH A 39 339 27 HOH HOH . O 6 HOH A 40 340 88 HOH HOH . O 6 HOH A 41 341 54 HOH HOH . O 6 HOH A 42 342 29 HOH HOH . O 6 HOH A 43 343 32 HOH HOH . O 6 HOH A 44 344 97 HOH HOH . O 6 HOH A 45 345 101 HOH HOH . O 6 HOH A 46 346 82 HOH HOH . O 6 HOH A 47 347 59 HOH HOH . O 6 HOH A 48 348 93 HOH HOH . O 6 HOH A 49 349 95 HOH HOH . O 6 HOH A 50 350 73 HOH HOH . P 6 HOH B 1 301 65 HOH HOH . P 6 HOH B 2 302 2 HOH HOH . P 6 HOH B 3 303 117 HOH HOH . P 6 HOH B 4 304 20 HOH HOH . P 6 HOH B 5 305 26 HOH HOH . P 6 HOH B 6 306 115 HOH HOH . P 6 HOH B 7 307 116 HOH HOH . P 6 HOH B 8 308 46 HOH HOH . P 6 HOH B 9 309 105 HOH HOH . P 6 HOH B 10 310 4 HOH HOH . P 6 HOH B 11 311 114 HOH HOH . P 6 HOH B 12 312 79 HOH HOH . P 6 HOH B 13 313 17 HOH HOH . P 6 HOH B 14 314 34 HOH HOH . P 6 HOH B 15 315 56 HOH HOH . P 6 HOH B 16 316 51 HOH HOH . P 6 HOH B 17 317 38 HOH HOH . P 6 HOH B 18 318 64 HOH HOH . P 6 HOH B 19 319 30 HOH HOH . P 6 HOH B 20 320 85 HOH HOH . P 6 HOH B 21 321 83 HOH HOH . P 6 HOH B 22 322 22 HOH HOH . P 6 HOH B 23 323 108 HOH HOH . P 6 HOH B 24 324 113 HOH HOH . P 6 HOH B 25 325 40 HOH HOH . P 6 HOH B 26 326 35 HOH HOH . P 6 HOH B 27 327 8 HOH HOH . P 6 HOH B 28 328 36 HOH HOH . P 6 HOH B 29 329 53 HOH HOH . P 6 HOH B 30 330 60 HOH HOH . P 6 HOH B 31 331 37 HOH HOH . P 6 HOH B 32 332 28 HOH HOH . P 6 HOH B 33 333 42 HOH HOH . P 6 HOH B 34 334 71 HOH HOH . P 6 HOH B 35 335 44 HOH HOH . P 6 HOH B 36 336 47 HOH HOH . P 6 HOH B 37 337 3 HOH HOH . P 6 HOH B 38 338 6 HOH HOH . P 6 HOH B 39 339 50 HOH HOH . P 6 HOH B 40 340 66 HOH HOH . P 6 HOH B 41 341 55 HOH HOH . P 6 HOH B 42 342 63 HOH HOH . P 6 HOH B 43 343 111 HOH HOH . P 6 HOH B 44 344 39 HOH HOH . P 6 HOH B 45 345 41 HOH HOH . P 6 HOH B 46 346 48 HOH HOH . P 6 HOH B 47 347 109 HOH HOH . P 6 HOH B 48 348 11 HOH HOH . P 6 HOH B 49 349 107 HOH HOH . P 6 HOH B 50 350 33 HOH HOH . P 6 HOH B 51 351 87 HOH HOH . P 6 HOH B 52 352 106 HOH HOH . P 6 HOH B 53 353 90 HOH HOH . P 6 HOH B 54 354 43 HOH HOH . P 6 HOH B 55 355 118 HOH HOH . P 6 HOH B 56 356 21 HOH HOH . P 6 HOH B 57 357 16 HOH HOH . P 6 HOH B 58 358 80 HOH HOH . P 6 HOH B 59 359 62 HOH HOH . P 6 HOH B 60 360 112 HOH HOH . P 6 HOH B 61 361 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . K 2 -20.97 -5.061 -23.07 1 36.21 0 CHA HEM 201 B 1 HETATM 2 C CHB HEM . . . K 2 -19.973 -0.486 -24.389 1 35.43 0 CHB HEM 201 B 1 HETATM 3 C CHC HEM . . . K 2 -23.981 1.163 -22.209 1 46.63 0 CHC HEM 201 B 1 HETATM 4 C CHD HEM . . . K 2 -25.131 -3.431 -21.186 1 43.74 0 CHD HEM 201 B 1 HETATM 5 C C1A HEM . . . K 2 -20.361 -3.919 -23.559 1 41.05 0 C1A HEM 201 B 1 HETATM 6 C C2A HEM . . . K 2 -19.059 -3.89 -24.096 1 38.46 0 C2A HEM 201 B 1 HETATM 7 C C3A HEM . . . K 2 -18.76 -2.633 -24.466 1 37.75 0 C3A HEM 201 B 1 HETATM 8 C C4A HEM . . . K 2 -19.885 -1.84 -24.166 1 36.26 0 C4A HEM 201 B 1 HETATM 9 C CMA HEM . . . K 2 -17.439 -2.212 -25.119 1 41.12 0 CMA HEM 201 B 1 HETATM 10 C CAA HEM . . . K 2 -18.14 -5.066 -24.272 1 45.35 0 CAA HEM 201 B 1 HETATM 11 C CBA HEM . . . K 2 -17.502 -5.471 -22.962 1 48.34 0 CBA HEM 201 B 1 HETATM 12 C CGA HEM . . . K 2 -17.29 -6.962 -22.986 1 61.92 0 CGA HEM 201 B 1 HETATM 13 O O1A HEM . . . K 2 -16.128 -7.366 -22.783 1 63.54 0 O1A HEM 201 B 1 HETATM 14 O O2A HEM . . . K 2 -18.251 -7.763 -23.204 1 68.17 0 O2A HEM 201 B 1 HETATM 15 C C1B HEM . . . K 2 -20.972 0.337 -23.892 1 37.47 0 C1B HEM 201 B 1 HETATM 16 C C2B HEM . . . K 2 -20.945 1.754 -24.029 1 38.91 0 C2B HEM 201 B 1 HETATM 17 C C3B HEM . . . K 2 -22.046 2.28 -23.413 1 41.81 0 C3B HEM 201 B 1 HETATM 18 C C4B HEM . . . K 2 -22.787 1.08 -22.912 1 42.61 0 C4B HEM 201 B 1 HETATM 19 C CMB HEM . . . K 2 -19.865 2.538 -24.705 1 45.07 0 CMB HEM 201 B 1 HETATM 20 C CAB HEM . . . K 2 -22.498 3.698 -23.273 1 45.37 0 CAB HEM 201 B 1 HETATM 21 C CBB HEM . . . K 2 -21.931 4.769 -23.861 1 47.14 0 CBB HEM 201 B 1 HETATM 22 C C1C HEM . . . K 2 -24.661 0.055 -21.702 1 44.9 0 C1C HEM 201 B 1 HETATM 23 C C2C HEM . . . K 2 -25.851 0.068 -20.938 1 45.81 0 C2C HEM 201 B 1 HETATM 24 C C3C HEM . . . K 2 -26.192 -1.256 -20.671 1 49.66 0 C3C HEM 201 B 1 HETATM 25 C C4C HEM . . . K 2 -25.176 -2.065 -21.26 1 48.81 0 C4C HEM 201 B 1 HETATM 26 C CMC HEM . . . K 2 -26.609 1.299 -20.524 1 49.28 0 CMC HEM 201 B 1 HETATM 27 C CAC HEM . . . K 2 -27.275 -1.8 -19.833 1 54.51 0 CAC HEM 201 B 1 HETATM 28 C CBC HEM . . . K 2 -27.929 -1.063 -18.947 1 55.7 0 CBC HEM 201 B 1 HETATM 29 C C1D HEM . . . K 2 -24.071 -4.18 -21.624 1 39.86 0 C1D HEM 201 B 1 HETATM 30 C C2D HEM . . . K 2 -24.093 -5.629 -21.405 1 46.66 0 C2D HEM 201 B 1 HETATM 31 C C3D HEM . . . K 2 -22.94 -6.101 -21.897 1 43.91 0 C3D HEM 201 B 1 HETATM 32 C C4D HEM . . . K 2 -22.229 -4.922 -22.466 1 42.77 0 C4D HEM 201 B 1 HETATM 33 C CMD HEM . . . K 2 -25.179 -6.426 -20.7 1 51.4 0 CMD HEM 201 B 1 HETATM 34 C CAD HEM . . . K 2 -22.476 -7.554 -21.912 1 51.41 0 CAD HEM 201 B 1 HETATM 35 C CBD HEM . . . K 2 -22.568 -8.236 -20.548 1 59.95 0 CBD HEM 201 B 1 HETATM 36 C CGD HEM . . . K 2 -21.384 -9.136 -20.257 1 72.46 0 CGD HEM 201 B 1 HETATM 37 O O1D HEM . . . K 2 -20.206 -8.775 -20.527 1 83.36 0 O1D HEM 201 B 1 HETATM 38 O O2D HEM . . . K 2 -21.581 -10.251 -19.72 0.2 71.91 0 O2D HEM 201 B 1 HETATM 39 N NA HEM . . . K 2 -20.867 -2.617 -23.596 1 38.01 0 NA HEM 201 B 1 HETATM 40 N NB HEM . . . K 2 -22.064 -0.017 -23.223 1 40.6 0 NB HEM 201 B 1 HETATM 41 N NC HEM . . . K 2 -24.263 -1.238 -21.883 1 40.48 0 NC HEM 201 B 1 HETATM 42 N ND HEM . . . K 2 -22.965 -3.793 -22.268 1 38.57 0 ND HEM 201 B 1 HETATM 43 FE FE HEM . . . K 2 -22.581 -2.002 -22.791 1 42.25 0 FE HEM 201 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #