data_7SJQ # _model_server_result.job_id OzpWYF6MQZUKrq_0-HUVkg _model_server_result.datetime_utc '2024-10-19 11:27:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sjq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7SJQ # _exptl.entry_id 7SJQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SJQ _cell.length_a 56.04 _cell.length_b 65.33 _cell.length_c 99.912 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 40 1_555 A SG CYS 99 A CYS 114 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 25 A CYS 40 1_555 A SG CYS 99 A CYS 114 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 B SG CYS 6 D CYS 6 1_555 B SG CYS 48 D CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 10 D CYS 10 1_555 B SG CYS 44 D CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A ND2 ASN 20 A ASN 35 1_555 D C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A OE1 GLU 16 A GLU 31 1_555 F NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7SJQ _atom_sites.fract_transf_matrix[1][1] 0.017844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 201 201 GOL GOL . D 4 NAG A 1 202 202 NAG NAG . E 5 SO4 A 1 203 1 SO4 SO4 . F 6 NA A 1 204 1 NA NA . G 7 HOH A 1 301 31 HOH HOH . G 7 HOH A 2 302 7 HOH HOH . G 7 HOH A 3 303 9 HOH HOH . G 7 HOH A 4 304 16 HOH HOH . G 7 HOH A 5 305 42 HOH HOH . G 7 HOH A 6 306 57 HOH HOH . G 7 HOH A 7 307 74 HOH HOH . G 7 HOH A 8 308 25 HOH HOH . G 7 HOH A 9 309 20 HOH HOH . G 7 HOH A 10 310 62 HOH HOH . G 7 HOH A 11 311 13 HOH HOH . G 7 HOH A 12 312 5 HOH HOH . G 7 HOH A 13 313 18 HOH HOH . G 7 HOH A 14 314 24 HOH HOH . G 7 HOH A 15 315 53 HOH HOH . G 7 HOH A 16 316 6 HOH HOH . G 7 HOH A 17 317 21 HOH HOH . G 7 HOH A 18 318 71 HOH HOH . G 7 HOH A 19 319 19 HOH HOH . G 7 HOH A 20 320 63 HOH HOH . G 7 HOH A 21 321 51 HOH HOH . G 7 HOH A 22 322 64 HOH HOH . G 7 HOH A 23 323 8 HOH HOH . G 7 HOH A 24 324 44 HOH HOH . G 7 HOH A 25 325 10 HOH HOH . G 7 HOH A 26 326 49 HOH HOH . G 7 HOH A 27 327 12 HOH HOH . G 7 HOH A 28 328 37 HOH HOH . G 7 HOH A 29 329 4 HOH HOH . G 7 HOH A 30 330 50 HOH HOH . G 7 HOH A 31 331 45 HOH HOH . G 7 HOH A 32 332 14 HOH HOH . G 7 HOH A 33 333 35 HOH HOH . G 7 HOH A 34 334 23 HOH HOH . G 7 HOH A 35 335 75 HOH HOH . G 7 HOH A 36 336 15 HOH HOH . G 7 HOH A 37 337 73 HOH HOH . G 7 HOH A 38 338 26 HOH HOH . G 7 HOH A 39 339 67 HOH HOH . G 7 HOH A 40 340 33 HOH HOH . G 7 HOH A 41 341 52 HOH HOH . G 7 HOH A 42 342 72 HOH HOH . G 7 HOH A 43 343 11 HOH HOH . G 7 HOH A 44 344 32 HOH HOH . G 7 HOH A 45 345 43 HOH HOH . G 7 HOH A 46 346 3 HOH HOH . G 7 HOH A 47 347 1 HOH HOH . G 7 HOH A 48 348 27 HOH HOH . G 7 HOH A 49 349 40 HOH HOH . G 7 HOH A 50 350 59 HOH HOH . G 7 HOH A 51 351 30 HOH HOH . G 7 HOH A 52 352 60 HOH HOH . G 7 HOH A 53 353 78 HOH HOH . G 7 HOH A 54 354 17 HOH HOH . G 7 HOH A 55 355 61 HOH HOH . G 7 HOH A 56 356 29 HOH HOH . G 7 HOH A 57 357 34 HOH HOH . G 7 HOH A 58 358 70 HOH HOH . G 7 HOH A 59 359 38 HOH HOH . G 7 HOH A 60 360 28 HOH HOH . G 7 HOH A 61 361 76 HOH HOH . G 7 HOH A 62 362 68 HOH HOH . G 7 HOH A 63 363 58 HOH HOH . G 7 HOH A 64 364 47 HOH HOH . G 7 HOH A 65 365 65 HOH HOH . G 7 HOH A 66 366 55 HOH HOH . G 7 HOH A 67 367 46 HOH HOH . G 7 HOH A 68 368 66 HOH HOH . G 7 HOH A 69 369 36 HOH HOH . G 7 HOH A 70 370 56 HOH HOH . G 7 HOH A 71 371 69 HOH HOH . G 7 HOH A 72 372 41 HOH HOH . G 7 HOH A 73 373 22 HOH HOH . G 7 HOH A 74 374 54 HOH HOH . H 7 HOH D 1 101 48 HOH HOH . H 7 HOH D 2 102 79 HOH HOH . H 7 HOH D 3 103 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -10.223 26.045 1.042 1 37.35 ? C1 NAG 202 A 1 HETATM 2 C C2 NAG . . . D 4 -11.749 26.121 0.963 1 43.73 ? C2 NAG 202 A 1 HETATM 3 C C3 NAG . . . D 4 -12.272 26.344 -0.447 1 48.36 ? C3 NAG 202 A 1 HETATM 4 C C4 NAG . . . D 4 -11.505 27.428 -1.17 1 47.87 ? C4 NAG 202 A 1 HETATM 5 C C5 NAG . . . D 4 -10.007 27.148 -1.094 1 47.77 ? C5 NAG 202 A 1 HETATM 6 C C6 NAG . . . D 4 -9.247 28.257 -1.813 1 47.68 ? C6 NAG 202 A 1 HETATM 7 C C7 NAG . . . D 4 -13.344 24.721 2.229 1 48.74 ? C7 NAG 202 A 1 HETATM 8 C C8 NAG . . . D 4 -13.897 23.33 2.345 1 50.01 ? C8 NAG 202 A 1 HETATM 9 N N2 NAG . . . D 4 -12.342 24.852 1.366 1 46.67 ? N2 NAG 202 A 1 HETATM 10 O O3 NAG . . . D 4 -13.666 26.682 -0.365 1 53.18 ? O3 NAG 202 A 1 HETATM 11 O O4 NAG . . . D 4 -11.964 27.451 -2.528 1 52.3 ? O4 NAG 202 A 1 HETATM 12 O O5 NAG . . . D 4 -9.571 27.057 0.275 1 42.64 ? O5 NAG 202 A 1 HETATM 13 O O6 NAG . . . D 4 -7.847 28.149 -1.527 1 50.81 ? O6 NAG 202 A 1 HETATM 14 O O7 NAG . . . D 4 -13.806 25.652 2.865 1 51.6 ? O7 NAG 202 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #