data_7SJR # _model_server_result.job_id zKTykFP5qAf5dvgV62A9Hw _model_server_result.datetime_utc '2025-02-17 19:43:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sjr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1103}' # _entry.id 7SJR # _exptl.entry_id 7SJR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SJR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 808 A CYS 807 1_555 E FE4 SF4 . A SF4 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc2 B OD2 ASP 921 A ASP 920 1_555 D MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 B O LEU 936 A LEU 935 1_555 D MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc4 B SG CYS 1028 A CYS 1027 1_555 E FE3 SF4 . A SF4 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc5 B SG CYS 1031 A CYS 1030 1_555 E FE1 SF4 . A SF4 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 B SG CYS 1037 A CYS 1036 1_555 E FE2 SF4 . A SF4 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? hydrog 'DT-DA PAIR' hydrog1 C N3 DT 7 C DT 4 1_555 C N1 DA 49 C DA 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DA MISPAIR' hydrog2 C N4 DC 8 C DC 5 1_555 C N1 DA 47 C DA 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog3 C N3 DC 8 C DC 5 1_555 C N2 DG 48 C DG 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N3 DT 9 C DT 6 1_555 C N1 DA 47 C DA 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O4 DT 9 C DT 6 1_555 C N6 DA 47 C DA 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N1 DA 10 C DA 7 1_555 C N3 DT 46 C DT 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N6 DA 10 C DA 7 1_555 C O4 DT 46 C DT 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N1 DA 11 C DA 8 1_555 C N3 DT 45 C DT 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N6 DA 11 C DA 8 1_555 C O4 DT 45 C DT 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DC MISPAIR' hydrog10 C O4 DT 12 C DT 9 1_555 C N4 DC 43 C DC 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog11 C N3 DT 12 C DT 9 1_555 C N1 DA 44 C DA 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N1 DG 13 C DG 10 1_555 C N3 DC 43 C DC 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N2 DG 13 C DG 10 1_555 C O2 DC 43 C DC 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C O6 DG 13 C DG 10 1_555 C N4 DC 43 C DC 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N3 DC 14 C DC 11 1_555 C N1 DG 42 C DG 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N4 DC 14 C DC 11 1_555 C O6 DG 42 C DG 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C O2 DC 14 C DC 11 1_555 C N2 DG 42 C DG 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog18 C N2 DG 15 C DG 12 1_555 C N3 DC 41 C DC 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog19 C N1 DA 16 C DA 13 1_555 C N3 DT 40 C DT 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog20 C N6 DA 16 C DA 13 1_555 C O2 DT 40 C DT 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N1 DG 17 C DG 14 1_555 C N3 DC 39 C DC 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N2 DG 17 C DG 14 1_555 C O2 DC 39 C DC 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C O6 DG 17 C DG 14 1_555 C N4 DC 39 C DC 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog24 C O2 DC 18 C DC 15 1_555 C N1 DG 38 C DG 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog25 C N1 DA 19 C DA 16 1_555 C N3 DT 37 C DT 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7SJR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 1101 1 MG MG . E 5 SF4 A 1 1102 1101 SF4 SF4 . F 6 ANP A 1 1103 1102 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 6 188.129 128.235 141.688 1 101.28 ? PG ANP 1103 A 1 HETATM 2 O O1G ANP . . . F 6 188.309 129.659 141.276 1 101.28 ? O1G ANP 1103 A 1 HETATM 3 O O2G ANP . . . F 6 189.278 127.359 141.062 1 101.28 ? O2G ANP 1103 A 1 HETATM 4 O O3G ANP . . . F 6 186.735 127.692 141.186 1 101.28 ? O3G ANP 1103 A 1 HETATM 5 P PB ANP . . . F 6 189.492 127.095 143.709 1 101.28 ? PB ANP 1103 A 1 HETATM 6 O O1B ANP . . . F 6 190.772 127.825 143.481 1 101.28 ? O1B ANP 1103 A 1 HETATM 7 O O2B ANP . . . F 6 189.433 125.879 142.742 1 101.28 ? O2B ANP 1103 A 1 HETATM 8 N N3B ANP . . . F 6 188.202 128.103 143.37 1 101.28 ? N3B ANP 1103 A 1 HETATM 9 P PA ANP . . . F 6 190.454 125.409 145.531 1 101.28 ? PA ANP 1103 A 1 HETATM 10 O O1A ANP . . . F 6 191.725 125.965 146.041 1 101.28 ? O1A ANP 1103 A 1 HETATM 11 O O2A ANP . . . F 6 190.601 124.57 144.259 1 101.28 ? O2A ANP 1103 A 1 HETATM 12 O O3A ANP . . . F 6 189.438 126.564 145.169 1 101.28 ? O3A ANP 1103 A 1 HETATM 13 O O5' ANP . . . F 6 189.774 124.568 146.68 1 101.28 ? O5' ANP 1103 A 1 HETATM 14 C C5' ANP . . . F 6 188.957 123.429 146.352 1 101.28 ? C5' ANP 1103 A 1 HETATM 15 C C4' ANP . . . F 6 189.385 122.25 147.189 1 101.28 ? C4' ANP 1103 A 1 HETATM 16 O O4' ANP . . . F 6 190.34 121.463 146.46 1 101.28 ? O4' ANP 1103 A 1 HETATM 17 C C3' ANP . . . F 6 190.101 122.596 148.488 1 101.28 ? C3' ANP 1103 A 1 HETATM 18 O O3' ANP . . . F 6 189.167 122.841 149.532 1 101.28 ? O3' ANP 1103 A 1 HETATM 19 C C2' ANP . . . F 6 190.941 121.339 148.764 1 101.28 ? C2' ANP 1103 A 1 HETATM 20 O O2' ANP . . . F 6 190.288 120.462 149.674 1 101.28 ? O2' ANP 1103 A 1 HETATM 21 C C1' ANP . . . F 6 191.077 120.682 147.38 1 101.28 ? C1' ANP 1103 A 1 HETATM 22 N N9 ANP . . . F 6 192.451 120.578 146.904 1 101.28 ? N9 ANP 1103 A 1 HETATM 23 C C8 ANP . . . F 6 193.164 121.523 146.215 1 101.28 ? C8 ANP 1103 A 1 HETATM 24 N N7 ANP . . . F 6 194.387 121.158 145.914 1 101.28 ? N7 ANP 1103 A 1 HETATM 25 C C5 ANP . . . F 6 194.485 119.88 146.445 1 101.28 ? C5 ANP 1103 A 1 HETATM 26 C C6 ANP . . . F 6 195.535 118.941 146.465 1 101.28 ? C6 ANP 1103 A 1 HETATM 27 N N6 ANP . . . F 6 196.733 119.155 145.919 1 101.28 ? N6 ANP 1103 A 1 HETATM 28 N N1 ANP . . . F 6 195.305 117.758 147.077 1 101.28 ? N1 ANP 1103 A 1 HETATM 29 C C2 ANP . . . F 6 194.107 117.54 147.627 1 101.28 ? C2 ANP 1103 A 1 HETATM 30 N N3 ANP . . . F 6 193.045 118.348 147.671 1 101.28 ? N3 ANP 1103 A 1 HETATM 31 C C4 ANP . . . F 6 193.301 119.511 147.057 1 101.28 ? C4 ANP 1103 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #