data_7SJT # _model_server_result.job_id TACxvICtv71hmOsGvk52aw _model_server_result.datetime_utc '2024-11-22 21:51:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 7SJT # _exptl.entry_id 7SJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.38 _cell.angle_gamma 90 _cell.entry_id 7SJT _cell.length_a 49.312 _cell.length_b 50.556 _cell.length_c 50.672 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 245 1_555 A SG CYS 206 A CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A O GLY 99 A GLY 326 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc2 A OD1 ASP 153 A ASP 380 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc3 A OD2 ASP 153 A ASP 380 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 A OD1 ASP 153 A ASP 380 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc5 A O LEU 154 A LEU 381 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc6 A OD1 ASN 201 A ASN 428 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc7 A O ALA 202 A ALA 429 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc8 A O ILE 250 A ILE 477 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc9 A OD1 ASP 251 A ASP 478 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc10 A OD1 ASP 251 A ASP 478 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc11 A OD2 ASP 251 A ASP 478 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc12 B CA CA . A CA 601 1_555 D O HOH . A HOH 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc13 B CA CA . A CA 601 1_555 D O HOH . A HOH 798 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc14 C NA NA . A NA 602 1_555 D O HOH . A HOH 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7SJT _atom_sites.fract_transf_matrix[1][1] 0.020279 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002267 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 601 1 CA CA . C 3 NA A 1 602 1 NA NA . D 4 HOH A 1 701 134 HOH HOH . D 4 HOH A 2 702 61 HOH HOH . D 4 HOH A 3 703 44 HOH HOH . D 4 HOH A 4 704 140 HOH HOH . D 4 HOH A 5 705 105 HOH HOH . D 4 HOH A 6 706 25 HOH HOH . D 4 HOH A 7 707 35 HOH HOH . D 4 HOH A 8 708 159 HOH HOH . D 4 HOH A 9 709 89 HOH HOH . D 4 HOH A 10 710 83 HOH HOH . D 4 HOH A 11 711 70 HOH HOH . D 4 HOH A 12 712 136 HOH HOH . D 4 HOH A 13 713 50 HOH HOH . D 4 HOH A 14 714 14 HOH HOH . D 4 HOH A 15 715 68 HOH HOH . D 4 HOH A 16 716 15 HOH HOH . D 4 HOH A 17 717 221 HOH HOH . D 4 HOH A 18 718 99 HOH HOH . D 4 HOH A 19 719 4 HOH HOH . D 4 HOH A 20 720 2 HOH HOH . D 4 HOH A 21 721 22 HOH HOH . D 4 HOH A 22 722 179 HOH HOH . D 4 HOH A 23 723 90 HOH HOH . D 4 HOH A 24 724 186 HOH HOH . D 4 HOH A 25 725 12 HOH HOH . D 4 HOH A 26 726 103 HOH HOH . D 4 HOH A 27 727 63 HOH HOH . D 4 HOH A 28 728 200 HOH HOH . D 4 HOH A 29 729 67 HOH HOH . D 4 HOH A 30 730 166 HOH HOH . D 4 HOH A 31 731 235 HOH HOH . D 4 HOH A 32 732 81 HOH HOH . D 4 HOH A 33 733 30 HOH HOH . D 4 HOH A 34 734 75 HOH HOH . D 4 HOH A 35 735 62 HOH HOH . D 4 HOH A 36 736 92 HOH HOH . D 4 HOH A 37 737 120 HOH HOH . D 4 HOH A 38 738 48 HOH HOH . D 4 HOH A 39 739 17 HOH HOH . D 4 HOH A 40 740 233 HOH HOH . D 4 HOH A 41 741 37 HOH HOH . D 4 HOH A 42 742 162 HOH HOH . D 4 HOH A 43 743 23 HOH HOH . D 4 HOH A 44 744 26 HOH HOH . D 4 HOH A 45 745 39 HOH HOH . D 4 HOH A 46 746 66 HOH HOH . D 4 HOH A 47 747 36 HOH HOH . D 4 HOH A 48 748 31 HOH HOH . D 4 HOH A 49 749 100 HOH HOH . D 4 HOH A 50 750 18 HOH HOH . D 4 HOH A 51 751 170 HOH HOH . D 4 HOH A 52 752 65 HOH HOH . D 4 HOH A 53 753 11 HOH HOH . D 4 HOH A 54 754 76 HOH HOH . D 4 HOH A 55 755 42 HOH HOH . D 4 HOH A 56 756 141 HOH HOH . D 4 HOH A 57 757 78 HOH HOH . D 4 HOH A 58 758 85 HOH HOH . D 4 HOH A 59 759 149 HOH HOH . D 4 HOH A 60 760 60 HOH HOH . D 4 HOH A 61 761 27 HOH HOH . D 4 HOH A 62 762 69 HOH HOH . D 4 HOH A 63 763 1 HOH HOH . D 4 HOH A 64 764 54 HOH HOH . D 4 HOH A 65 765 21 HOH HOH . D 4 HOH A 66 766 49 HOH HOH . D 4 HOH A 67 767 71 HOH HOH . D 4 HOH A 68 768 225 HOH HOH . D 4 HOH A 69 769 154 HOH HOH . D 4 HOH A 70 770 82 HOH HOH . D 4 HOH A 71 771 40 HOH HOH . D 4 HOH A 72 772 132 HOH HOH . D 4 HOH A 73 773 107 HOH HOH . D 4 HOH A 74 774 109 HOH HOH . D 4 HOH A 75 775 51 HOH HOH . D 4 HOH A 76 776 288 HOH HOH . D 4 HOH A 77 777 106 HOH HOH . D 4 HOH A 78 778 56 HOH HOH . D 4 HOH A 79 779 6 HOH HOH . D 4 HOH A 80 780 210 HOH HOH . D 4 HOH A 81 781 41 HOH HOH . D 4 HOH A 82 782 84 HOH HOH . D 4 HOH A 83 783 77 HOH HOH . D 4 HOH A 84 784 20 HOH HOH . D 4 HOH A 85 785 201 HOH HOH . D 4 HOH A 86 786 5 HOH HOH . D 4 HOH A 87 787 153 HOH HOH . D 4 HOH A 88 788 101 HOH HOH . D 4 HOH A 89 789 16 HOH HOH . D 4 HOH A 90 790 38 HOH HOH . D 4 HOH A 91 791 57 HOH HOH . D 4 HOH A 92 792 156 HOH HOH . D 4 HOH A 93 793 93 HOH HOH . D 4 HOH A 94 794 86 HOH HOH . D 4 HOH A 95 795 95 HOH HOH . D 4 HOH A 96 796 29 HOH HOH . D 4 HOH A 97 797 112 HOH HOH . D 4 HOH A 98 798 19 HOH HOH . D 4 HOH A 99 799 8 HOH HOH . D 4 HOH A 100 800 24 HOH HOH . D 4 HOH A 101 801 52 HOH HOH . D 4 HOH A 102 802 228 HOH HOH . D 4 HOH A 103 803 176 HOH HOH . D 4 HOH A 104 804 98 HOH HOH . D 4 HOH A 105 805 88 HOH HOH . D 4 HOH A 106 806 133 HOH HOH . D 4 HOH A 107 807 114 HOH HOH . D 4 HOH A 108 808 152 HOH HOH . D 4 HOH A 109 809 118 HOH HOH . D 4 HOH A 110 810 73 HOH HOH . D 4 HOH A 111 811 177 HOH HOH . D 4 HOH A 112 812 74 HOH HOH . D 4 HOH A 113 813 58 HOH HOH . D 4 HOH A 114 814 116 HOH HOH . D 4 HOH A 115 815 46 HOH HOH . D 4 HOH A 116 816 158 HOH HOH . D 4 HOH A 117 817 55 HOH HOH . D 4 HOH A 118 818 172 HOH HOH . D 4 HOH A 119 819 45 HOH HOH . D 4 HOH A 120 820 126 HOH HOH . D 4 HOH A 121 821 119 HOH HOH . D 4 HOH A 122 822 169 HOH HOH . D 4 HOH A 123 823 208 HOH HOH . D 4 HOH A 124 824 80 HOH HOH . D 4 HOH A 125 825 155 HOH HOH . D 4 HOH A 126 826 215 HOH HOH . D 4 HOH A 127 827 117 HOH HOH . D 4 HOH A 128 828 96 HOH HOH . D 4 HOH A 129 829 9 HOH HOH . D 4 HOH A 130 830 130 HOH HOH . D 4 HOH A 131 831 79 HOH HOH . D 4 HOH A 132 832 13 HOH HOH . D 4 HOH A 133 833 34 HOH HOH . D 4 HOH A 134 834 108 HOH HOH . D 4 HOH A 135 835 33 HOH HOH . D 4 HOH A 136 836 28 HOH HOH . D 4 HOH A 137 837 222 HOH HOH . D 4 HOH A 138 838 115 HOH HOH . D 4 HOH A 139 839 3 HOH HOH . D 4 HOH A 140 840 220 HOH HOH . D 4 HOH A 141 841 7 HOH HOH . D 4 HOH A 142 842 229 HOH HOH . D 4 HOH A 143 843 263 HOH HOH . D 4 HOH A 144 844 91 HOH HOH . D 4 HOH A 145 845 161 HOH HOH . D 4 HOH A 146 846 143 HOH HOH . D 4 HOH A 147 847 125 HOH HOH . D 4 HOH A 148 848 168 HOH HOH . D 4 HOH A 149 849 104 HOH HOH . D 4 HOH A 150 850 47 HOH HOH . D 4 HOH A 151 851 157 HOH HOH . D 4 HOH A 152 852 147 HOH HOH . D 4 HOH A 153 853 276 HOH HOH . D 4 HOH A 154 854 59 HOH HOH . D 4 HOH A 155 855 53 HOH HOH . D 4 HOH A 156 856 131 HOH HOH . D 4 HOH A 157 857 232 HOH HOH . D 4 HOH A 158 858 129 HOH HOH . D 4 HOH A 159 859 138 HOH HOH . D 4 HOH A 160 860 32 HOH HOH . D 4 HOH A 161 861 102 HOH HOH . D 4 HOH A 162 862 230 HOH HOH . D 4 HOH A 163 863 167 HOH HOH . D 4 HOH A 164 864 137 HOH HOH . D 4 HOH A 165 865 265 HOH HOH . D 4 HOH A 166 866 164 HOH HOH . D 4 HOH A 167 867 113 HOH HOH . D 4 HOH A 168 868 151 HOH HOH . D 4 HOH A 169 869 97 HOH HOH . D 4 HOH A 170 870 94 HOH HOH . D 4 HOH A 171 871 248 HOH HOH . D 4 HOH A 172 872 173 HOH HOH . D 4 HOH A 173 873 128 HOH HOH . D 4 HOH A 174 874 174 HOH HOH . D 4 HOH A 175 875 87 HOH HOH . D 4 HOH A 176 876 270 HOH HOH . D 4 HOH A 177 877 72 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -11.18 _atom_site.Cartn_y -1.612 _atom_site.Cartn_z -11.39 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #