data_7SKD
#
_model_server_result.job_id            MkjgXMicWGKGCku8EVMqSw 
_model_server_result.datetime_utc      '2025-01-08 04:40:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7skd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    7SKD 
#
_exptl.entry_id    7SKD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.148 
_cell.angle_gamma         90 
_cell.entry_id            7SKD 
_cell.length_a            49.18 
_cell.length_b            50.6 
_cell.length_c            50.28 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7SKD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 A CYS 245 1_555 A SG CYS 206 A CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc1 A O GLY 99 A GLY 326 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc2 A OD1 ASP 153 A ASP 380 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? 
metalc ? metalc3 A OD2 ASP 153 A ASP 380 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc4 A OD1 ASP 153 A ASP 380 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc5 A O LEU 154 A LEU 381 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc6 A OD1 ASN 201 A ASN 428 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc7 A O ALA 202 A ALA 429 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc8 A O ILE 250 A ILE 477 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc9 A OD1 ASP 251 A ASP 478 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc10 A OD1 ASP 251 A ASP 478 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? 
metalc ? metalc11 A OD2 ASP 251 A ASP 478 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc12 B CA CA . A CA 601 1_555 D O HOH . A HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7SKD 
_atom_sites.fract_transf_matrix[1][1]    0.020333 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00255 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019763 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020044 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 601 1 CA CA . 
C 3 NA A 1 602 1 NA NA . 
D 4 HOH A 1 701 47 HOH HOH . 
D 4 HOH A 2 702 42 HOH HOH . 
D 4 HOH A 3 703 71 HOH HOH . 
D 4 HOH A 4 704 72 HOH HOH . 
D 4 HOH A 5 705 102 HOH HOH . 
D 4 HOH A 6 706 21 HOH HOH . 
D 4 HOH A 7 707 130 HOH HOH . 
D 4 HOH A 8 708 12 HOH HOH . 
D 4 HOH A 9 709 76 HOH HOH . 
D 4 HOH A 10 710 33 HOH HOH . 
D 4 HOH A 11 711 20 HOH HOH . 
D 4 HOH A 12 712 16 HOH HOH . 
D 4 HOH A 13 713 11 HOH HOH . 
D 4 HOH A 14 714 26 HOH HOH . 
D 4 HOH A 15 715 114 HOH HOH . 
D 4 HOH A 16 716 134 HOH HOH . 
D 4 HOH A 17 717 101 HOH HOH . 
D 4 HOH A 18 718 126 HOH HOH . 
D 4 HOH A 19 719 95 HOH HOH . 
D 4 HOH A 20 720 4 HOH HOH . 
D 4 HOH A 21 721 106 HOH HOH . 
D 4 HOH A 22 722 115 HOH HOH . 
D 4 HOH A 23 723 109 HOH HOH . 
D 4 HOH A 24 724 23 HOH HOH . 
D 4 HOH A 25 725 17 HOH HOH . 
D 4 HOH A 26 726 41 HOH HOH . 
D 4 HOH A 27 727 50 HOH HOH . 
D 4 HOH A 28 728 96 HOH HOH . 
D 4 HOH A 29 729 73 HOH HOH . 
D 4 HOH A 30 730 70 HOH HOH . 
D 4 HOH A 31 731 121 HOH HOH . 
D 4 HOH A 32 732 2 HOH HOH . 
D 4 HOH A 33 733 110 HOH HOH . 
D 4 HOH A 34 734 59 HOH HOH . 
D 4 HOH A 35 735 25 HOH HOH . 
D 4 HOH A 36 736 15 HOH HOH . 
D 4 HOH A 37 737 46 HOH HOH . 
D 4 HOH A 38 738 14 HOH HOH . 
D 4 HOH A 39 739 68 HOH HOH . 
D 4 HOH A 40 740 63 HOH HOH . 
D 4 HOH A 41 741 53 HOH HOH . 
D 4 HOH A 42 742 38 HOH HOH . 
D 4 HOH A 43 743 74 HOH HOH . 
D 4 HOH A 44 744 24 HOH HOH . 
D 4 HOH A 45 745 80 HOH HOH . 
D 4 HOH A 46 746 55 HOH HOH . 
D 4 HOH A 47 747 36 HOH HOH . 
D 4 HOH A 48 748 28 HOH HOH . 
D 4 HOH A 49 749 3 HOH HOH . 
D 4 HOH A 50 750 66 HOH HOH . 
D 4 HOH A 51 751 127 HOH HOH . 
D 4 HOH A 52 752 82 HOH HOH . 
D 4 HOH A 53 753 8 HOH HOH . 
D 4 HOH A 54 754 58 HOH HOH . 
D 4 HOH A 55 755 62 HOH HOH . 
D 4 HOH A 56 756 7 HOH HOH . 
D 4 HOH A 57 757 39 HOH HOH . 
D 4 HOH A 58 758 103 HOH HOH . 
D 4 HOH A 59 759 44 HOH HOH . 
D 4 HOH A 60 760 129 HOH HOH . 
D 4 HOH A 61 761 18 HOH HOH . 
D 4 HOH A 62 762 19 HOH HOH . 
D 4 HOH A 63 763 75 HOH HOH . 
D 4 HOH A 64 764 35 HOH HOH . 
D 4 HOH A 65 765 29 HOH HOH . 
D 4 HOH A 66 766 52 HOH HOH . 
D 4 HOH A 67 767 6 HOH HOH . 
D 4 HOH A 68 768 9 HOH HOH . 
D 4 HOH A 69 769 133 HOH HOH . 
D 4 HOH A 70 770 27 HOH HOH . 
D 4 HOH A 71 771 49 HOH HOH . 
D 4 HOH A 72 772 111 HOH HOH . 
D 4 HOH A 73 773 1 HOH HOH . 
D 4 HOH A 74 774 91 HOH HOH . 
D 4 HOH A 75 775 99 HOH HOH . 
D 4 HOH A 76 776 10 HOH HOH . 
D 4 HOH A 77 777 100 HOH HOH . 
D 4 HOH A 78 778 60 HOH HOH . 
D 4 HOH A 79 779 81 HOH HOH . 
D 4 HOH A 80 780 56 HOH HOH . 
D 4 HOH A 81 781 132 HOH HOH . 
D 4 HOH A 82 782 51 HOH HOH . 
D 4 HOH A 83 783 125 HOH HOH . 
D 4 HOH A 84 784 117 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -13.618 
_atom_site.Cartn_y               -1.485 
_atom_site.Cartn_z               -8.515 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        15.8 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           42 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           776 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#