data_7SKR
#
_model_server_result.job_id            FCZw-sWgRSbNmzqN7GzpPQ 
_model_server_result.datetime_utc      '2024-11-13 03:48:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7skr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7SKR 
#
_exptl.entry_id    7SKR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              415.527 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(2-methoxypyridin-4-yl)methyl]-2-[(1R)-1-(naphthalen-1-yl)ethyl]-2-azaspiro[3.3]heptane-6-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7SKR 
_cell.length_a            176.306 
_cell.length_b            176.306 
_cell.length_c            79.834 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7SKR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-2/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -88.153 -152.685475 -53.222667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 114 A ASN 111 1_555 A N OCS 115 A OCS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C OCS 115 A OCS 112 1_555 A N TYR 116 A TYR 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A OD1 OCS 115 A OCS 112 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc2 A SG CYS 193 A CYS 190 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc3 A SG CYS 196 A CYS 193 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 A SG CYS 228 A CYS 225 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc5 A SG CYS 230 A CYS 227 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
#
_chem_comp.formula           'C26 H29 N3 O2' 
_chem_comp.formula_weight    415.527 
_chem_comp.id                9OZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(2-methoxypyridin-4-yl)methyl]-2-[(1R)-1-(naphthalen-1-yl)ethyl]-2-azaspiro[3.3]heptane-6-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 9OZ sing 1 n n 
O1 C2 9OZ sing 2 n n 
C2 N3 9OZ doub 3 n y 
C2 C3 9OZ sing 4 n y 
N3 C26 9OZ sing 5 n y 
C3 C4 9OZ doub 6 n y 
C26 C25 9OZ doub 7 n y 
C4 C25 9OZ sing 8 n y 
C4 C5 9OZ sing 9 n n 
C5 N1 9OZ sing 10 n n 
O2 C6 9OZ doub 11 n n 
C6 N1 9OZ sing 12 n n 
C6 C7 9OZ sing 13 n n 
C7 C8 9OZ sing 14 n n 
C7 C10 9OZ sing 15 n n 
C8 C9 9OZ sing 16 n n 
C10 C9 9OZ sing 17 n n 
C9 C11 9OZ sing 18 n n 
C9 C24 9OZ sing 19 n n 
C11 N2 9OZ sing 20 n n 
C24 N2 9OZ sing 21 n n 
N2 C12 9OZ sing 22 n n 
C12 C14 9OZ sing 23 n n 
C12 C13 9OZ sing 24 n n 
C15 C14 9OZ doub 25 n y 
C15 C16 9OZ sing 26 n y 
C14 C23 9OZ sing 27 n y 
C16 C17 9OZ doub 28 n y 
C23 C22 9OZ sing 29 n y 
C23 C18 9OZ doub 30 n y 
C17 C18 9OZ sing 31 n y 
C22 C21 9OZ doub 32 n y 
C18 C19 9OZ sing 33 n y 
C21 C20 9OZ sing 34 n y 
C19 C20 9OZ doub 35 n y 
C1 H1 9OZ sing 36 n n 
C1 H2 9OZ sing 37 n n 
C1 H3 9OZ sing 38 n n 
C3 H4 9OZ sing 39 n n 
C5 H5 9OZ sing 40 n n 
C5 H6 9OZ sing 41 n n 
C7 H7 9OZ sing 42 n n 
C8 H8 9OZ sing 43 n n 
C8 H9 9OZ sing 44 n n 
C10 H10 9OZ sing 45 n n 
C10 H11 9OZ sing 46 n n 
C11 H12 9OZ sing 47 n n 
C11 H13 9OZ sing 48 n n 
C12 H14 9OZ sing 49 n n 
C13 H15 9OZ sing 50 n n 
C13 H16 9OZ sing 51 n n 
C13 H17 9OZ sing 52 n n 
C15 H18 9OZ sing 53 n n 
C16 H19 9OZ sing 54 n n 
C17 H20 9OZ sing 55 n n 
C19 H21 9OZ sing 56 n n 
C20 H22 9OZ sing 57 n n 
C21 H23 9OZ sing 58 n n 
C22 H24 9OZ sing 59 n n 
C24 H25 9OZ sing 60 n n 
C24 H26 9OZ sing 61 n n 
C25 H27 9OZ sing 62 n n 
C26 H28 9OZ sing 63 n n 
N1 H29 9OZ sing 64 n n 
#
_atom_sites.entry_id                     7SKR 
_atom_sites.fract_transf_matrix[1][1]    0.005672 
_atom_sites.fract_transf_matrix[1][2]    0.003275 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006549 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012526 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 9OZ A 1 401 401 9OZ D12 . 
C 3 DMS A 1 402 501 DMS DMS . 
D 4 ZN A 1 403 1 ZN ZN . 
E 4 ZN A 1 404 2 ZN ZN . 
F 5 HOH A 1 501 26 HOH HOH . 
F 5 HOH A 2 502 13 HOH HOH . 
F 5 HOH A 3 503 14 HOH HOH . 
F 5 HOH A 4 504 1 HOH HOH . 
F 5 HOH A 5 505 11 HOH HOH . 
F 5 HOH A 6 506 5 HOH HOH . 
F 5 HOH A 7 507 9 HOH HOH . 
F 5 HOH A 8 508 12 HOH HOH . 
F 5 HOH A 9 509 7 HOH HOH . 
F 5 HOH A 10 510 15 HOH HOH . 
F 5 HOH A 11 511 3 HOH HOH . 
F 5 HOH A 12 512 16 HOH HOH . 
F 5 HOH A 13 513 24 HOH HOH . 
F 5 HOH A 14 514 23 HOH HOH . 
F 5 HOH A 15 515 8 HOH HOH . 
F 5 HOH A 16 516 17 HOH HOH . 
F 5 HOH A 17 517 2 HOH HOH . 
F 5 HOH A 18 518 22 HOH HOH . 
F 5 HOH A 19 519 10 HOH HOH . 
F 5 HOH A 20 520 4 HOH HOH . 
F 5 HOH A 21 521 25 HOH HOH . 
F 5 HOH A 22 522 21 HOH HOH . 
F 5 HOH A 23 523 19 HOH HOH . 
F 5 HOH A 24 524 20 HOH HOH . 
F 5 HOH A 25 525 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 9OZ . . . B 2 -36.922 -45.418 -19.234 1 114.84 ? C1 9OZ 401 A 1 
HETATM 2 C C2 9OZ . . . B 2 -38.69 -46.586 -18.094 1 123.49 ? C2 9OZ 401 A 1 
HETATM 3 C C3 9OZ . . . B 2 -39.114 -47.833 -17.612 1 110.96 ? C3 9OZ 401 A 1 
HETATM 4 C C4 9OZ . . . B 2 -40.074 -47.859 -16.606 1 120.36 ? C4 9OZ 401 A 1 
HETATM 5 C C5 9OZ . . . B 2 -40.583 -49.158 -16.029 1 109.1 ? C5 9OZ 401 A 1 
HETATM 6 C C6 9OZ . . . B 2 -42.749 -48.879 -14.918 1 83.31 ? C6 9OZ 401 A 1 
HETATM 7 C C7 9OZ . . . B 2 -43.497 -48.544 -13.644 1 83.29 ? C7 9OZ 401 A 1 
HETATM 8 C C8 9OZ . . . B 2 -44.892 -49.167 -13.387 1 67.68 ? C8 9OZ 401 A 1 
HETATM 9 C C9 9OZ . . . B 2 -44.524 -49.006 -11.895 1 77.08 ? C9 9OZ 401 A 1 
HETATM 10 C C10 9OZ . . . B 2 -43.057 -49.223 -12.323 1 76.88 ? C10 9OZ 401 A 1 
HETATM 11 C C11 9OZ . . . B 2 -44.94 -47.718 -11.139 1 81.59 ? C11 9OZ 401 A 1 
HETATM 12 C C12 9OZ . . . B 2 -45.025 -48.373 -8.61 1 83.92 ? C12 9OZ 401 A 1 
HETATM 13 C C13 9OZ . . . B 2 -45.995 -49.106 -7.692 1 74.07 ? C13 9OZ 401 A 1 
HETATM 14 C C14 9OZ . . . B 2 -44.925 -46.886 -8.259 1 78.98 ? C14 9OZ 401 A 1 
HETATM 15 C C15 9OZ . . . B 2 -46.029 -46.085 -8.456 1 76.9 ? C15 9OZ 401 A 1 
HETATM 16 C C16 9OZ . . . B 2 -46.016 -44.707 -8.156 1 74.6 ? C16 9OZ 401 A 1 
HETATM 17 C C17 9OZ . . . B 2 -44.894 -44.128 -7.653 1 82.13 ? C17 9OZ 401 A 1 
HETATM 18 C C18 9OZ . . . B 2 -43.721 -44.888 -7.42 1 84.34 ? C18 9OZ 401 A 1 
HETATM 19 C C19 9OZ . . . B 2 -42.555 -44.276 -6.895 1 83.11 ? C19 9OZ 401 A 1 
HETATM 20 C C20 9OZ . . . B 2 -41.426 -45 -6.669 1 87.04 ? C20 9OZ 401 A 1 
HETATM 21 C C21 9OZ . . . B 2 -41.399 -46.375 -6.956 1 79.49 ? C21 9OZ 401 A 1 
HETATM 22 C C22 9OZ . . . B 2 -42.503 -46.999 -7.464 1 76.77 ? C22 9OZ 401 A 1 
HETATM 23 C C23 9OZ . . . B 2 -43.716 -46.291 -7.721 1 77.2 ? C23 9OZ 401 A 1 
HETATM 24 C C24 9OZ . . . B 2 -45.201 -49.846 -10.78 1 76.3 ? C24 9OZ 401 A 1 
HETATM 25 C C25 9OZ . . . B 2 -40.564 -46.652 -16.127 1 113.39 ? C25 9OZ 401 A 1 
HETATM 26 C C26 9OZ . . . B 2 -40.088 -45.473 -16.662 1 108.11 ? C26 9OZ 401 A 1 
HETATM 27 N N1 9OZ . . . B 2 -41.406 -48.876 -14.863 1 97.05 ? N1 9OZ 401 A 1 
HETATM 28 N N2 9OZ . . . B 2 -45.437 -48.576 -10.027 1 74.96 ? N2 9OZ 401 A 1 
HETATM 29 N N3 9OZ . . . B 2 -39.155 -45.433 -17.641 1 113.77 ? N3 9OZ 401 A 1 
HETATM 30 O O1 9OZ . . . B 2 -37.751 -46.583 -19.077 1 141.28 ? O1 9OZ 401 A 1 
HETATM 31 O O2 9OZ . . . B 2 -43.363 -49.128 -15.966 1 82.23 ? O2 9OZ 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#