data_7SLQ # _model_server_result.job_id qsJs8e_c6BEnbuK-RNraCA _model_server_result.datetime_utc '2024-11-08 05:58:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7slq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 7SLQ # _exptl.entry_id 7SLQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SLQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SLQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' G5J 1 R G5J 1 1_555 C P G 2 R G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? hydrog WATSON-CRICK hydrog1 C N1 G 2 R G 2 1_555 C N3 C 27 R C 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N2 G 2 R G 2 1_555 C O2 C 27 R C 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O6 G 2 R G 2 1_555 C N4 C 27 R C 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 A 3 R A 3 1_555 C N3 U 26 R U 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N6 A 3 R A 3 1_555 C O4 U 26 R U 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 U 4 R U 4 1_555 C N1 A 25 R A 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O4 U 4 R U 4 1_555 C N6 A 25 R A 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N1 G 5 R G 5 1_555 C N3 C 24 R C 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N2 G 5 R G 5 1_555 C O2 C 24 R C 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O6 G 5 R G 5 1_555 C N4 C 24 R C 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N3 U 6 R U 6 1_555 C N1 A 23 R A 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O4 U 6 R U 6 1_555 C N6 A 23 R A 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 G 7 R G 7 1_555 C N3 C 22 R C 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N2 G 7 R G 7 1_555 C O2 C 22 R C 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O6 G 7 R G 7 1_555 C N4 C 22 R C 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N1 G 35 R G 302 1_555 C N3 C 57 R C 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N2 G 35 R G 302 1_555 C O2 C 57 R C 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O6 G 35 R G 302 1_555 C N4 C 57 R C 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N1 G 36 R G 303 1_555 C N3 C 56 R C 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N2 G 36 R G 303 1_555 C O2 C 56 R C 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C O6 G 36 R G 303 1_555 C N4 C 56 R C 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N3 C 37 R C 304 1_555 C N1 G 55 R G 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N4 C 37 R C 304 1_555 C O6 G 55 R G 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C O2 C 37 R C 304 1_555 C N2 G 55 R G 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog25 C N1 G 38 R G 305 1_555 C O2 U 52 R U 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog26 C O6 G 38 R G 305 1_555 C N3 U 52 R U 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N3 C 39 R C 306 1_555 C N1 G 51 R G 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N4 C 39 R C 306 1_555 C O6 G 51 R G 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O2 C 39 R C 306 1_555 C N2 G 51 R G 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N3 U 40 R U 307 1_555 C N1 A 50 R A 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C O4 U 40 R U 307 1_555 C N6 A 50 R A 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N1 G 41 R G 308 1_555 C N3 C 49 R C 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N2 G 41 R G 308 1_555 C O2 C 49 R C 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C O6 G 41 R G 308 1_555 C N4 C 49 R C 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C N3 C 42 R C 309 1_555 C N1 G 48 R G 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N4 C 42 R C 309 1_555 C O6 G 48 R G 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C O2 C 42 R C 309 1_555 C N2 G 48 R G 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 443 n n N HN1 SAH sing 444 n n N HN2 SAH sing 445 n n CA CB SAH sing 446 n n CA C SAH sing 447 n n CA HA SAH sing 448 n n CB CG SAH sing 449 n n CB HB1 SAH sing 450 n n CB HB2 SAH sing 451 n n CG SD SAH sing 452 n n CG HG1 SAH sing 453 n n CG HG2 SAH sing 454 n n SD C5' SAH sing 455 n n C O SAH doub 456 n n C OXT SAH sing 457 n n OXT HXT SAH sing 458 n n C5' C4' SAH sing 459 n n C5' "H5'1" SAH sing 460 n n C5' "H5'2" SAH sing 461 n n C4' O4' SAH sing 462 n n C4' C3' SAH sing 463 n n C4' H4' SAH sing 464 n n O4' C1' SAH sing 465 n n C3' O3' SAH sing 466 n n C3' C2' SAH sing 467 n n C3' H3' SAH sing 468 n n O3' HO3' SAH sing 469 n n C2' O2' SAH sing 470 n n C2' C1' SAH sing 471 n n C2' H2' SAH sing 472 n n O2' HO2' SAH sing 473 n n C1' N9 SAH sing 474 n n C1' H1' SAH sing 475 n n N9 C8 SAH sing 476 n y N9 C4 SAH sing 477 n y C8 N7 SAH doub 478 n y C8 H8 SAH sing 479 n n N7 C5 SAH sing 480 n y C5 C6 SAH sing 481 n y C5 C4 SAH doub 482 n y C6 N6 SAH sing 483 n n C6 N1 SAH doub 484 n y N6 HN61 SAH sing 485 n n N6 HN62 SAH sing 486 n n N1 C2 SAH sing 487 n y C2 N3 SAH doub 488 n y C2 H2 SAH sing 489 n n N3 C4 SAH sing 490 n y # _atom_sites.entry_id 7SLQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id SAH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 701 _pdbx_nonpoly_scheme.auth_seq_num 701 _pdbx_nonpoly_scheme.pdb_mon_id SAH _pdbx_nonpoly_scheme.auth_mon_id SAH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 4 100.834 97.472 114.529 1 23.52 ? N SAH 701 A 1 HETATM 2 C CA SAH . . . D 4 101.341 97.775 113.196 1 23.52 ? CA SAH 701 A 1 HETATM 3 C CB SAH . . . D 4 102.762 97.249 113.045 1 23.52 ? CB SAH 701 A 1 HETATM 4 C CG SAH . . . D 4 103.652 97.497 114.255 1 23.52 ? CG SAH 701 A 1 HETATM 5 S SD SAH . . . D 4 105.006 98.633 113.855 1 23.52 ? SD SAH 701 A 1 HETATM 6 C C SAH . . . D 4 100.432 97.207 112.113 1 23.52 ? C SAH 701 A 1 HETATM 7 O O SAH . . . D 4 100.511 97.601 110.95 1 23.52 ? O SAH 701 A 1 HETATM 8 O OXT SAH . . . D 4 99.593 96.347 112.38 1 23.52 ? OXT SAH 701 A 1 HETATM 9 C C5' SAH . . . D 4 105.024 99.282 115.542 1 23.52 ? C5' SAH 701 A 1 HETATM 10 C C4' SAH . . . D 4 104.766 100.777 115.582 1 23.52 ? C4' SAH 701 A 1 HETATM 11 O O4' SAH . . . D 4 104.788 101.254 116.91 1 23.52 ? O4' SAH 701 A 1 HETATM 12 C C3' SAH . . . D 4 105.823 101.576 114.85 1 23.52 ? C3' SAH 701 A 1 HETATM 13 O O3' SAH . . . D 4 105.295 102.033 113.634 1 23.52 ? O3' SAH 701 A 1 HETATM 14 C C2' SAH . . . D 4 106.097 102.764 115.742 1 23.52 ? C2' SAH 701 A 1 HETATM 15 O O2' SAH . . . D 4 105.85 103.955 115.043 1 23.52 ? O2' SAH 701 A 1 HETATM 16 C C1' SAH . . . D 4 105.11 102.626 116.882 1 23.52 ? C1' SAH 701 A 1 HETATM 17 N N9 SAH . . . D 4 105.702 103.128 118.134 1 23.52 ? N9 SAH 701 A 1 HETATM 18 C C8 SAH . . . D 4 107.03 103.159 118.436 1 23.52 ? C8 SAH 701 A 1 HETATM 19 N N7 SAH . . . D 4 107.175 103.706 119.662 1 23.52 ? N7 SAH 701 A 1 HETATM 20 C C5 SAH . . . D 4 105.962 104.026 120.14 1 23.52 ? C5 SAH 701 A 1 HETATM 21 C C6 SAH . . . D 4 105.559 104.603 121.326 1 23.52 ? C6 SAH 701 A 1 HETATM 22 N N6 SAH . . . D 4 106.459 104.938 122.234 1 23.52 ? N6 SAH 701 A 1 HETATM 23 N N1 SAH . . . D 4 104.229 104.828 121.575 1 23.52 ? N1 SAH 701 A 1 HETATM 24 C C2 SAH . . . D 4 103.306 104.474 120.624 1 23.52 ? C2 SAH 701 A 1 HETATM 25 N N3 SAH . . . D 4 103.717 103.898 119.44 1 23.52 ? N3 SAH 701 A 1 HETATM 26 C C4 SAH . . . D 4 105.025 103.677 119.194 1 23.52 ? C4 SAH 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #